Lsi01G018730 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G018730
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribonuclease H
Location	chr01: 20906082 .. 20910000 (+)
RNA-Seq Expression	Lsi01G018730
Synteny	Lsi01G018730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAACAAAGTTAACCATGGTAACATAAGTCAGTTGCCGCATCCAAACTCTGGAGTTCCTCATTATCCACATAATTATCATGCACCACCTCATCCATATTATCAACCTTACGTAAATGATGCAGCAGTCCAATATTATCCCCCTCCTCCTCAAAATCAATGCTCTTATGTGAATCAGGGGTACCAGCCTCAAGGTCAACAAAATTCTTATGCTCGAGGACAAGATAATAATAAAGGGGGTCGTAAACAAGTGCAGTTTGATCCGATTCCAATGACTTACACAGAGCTTCTGCCACGACTATTTCAGAATAATCAACTAGCACCTGTACCAATAGAACCACTCAACCTCCTCATCCAAAGTGGTATGACCCAAATGCCCGTTGTGATTATCATGCAGGAGTCAATGAGCATTCAATTAAGAATTGTACCGCACTTAAGTACAGGGTATAGGCATTGATCAAGGAGGGATGGCTGAATTTTAATAAGAATAATGGACCTGACGTAAATAATAACCCTCTTCCAAACCACCAAAATCCACAAGTAAATGCTGTAGATGTGGATGAGGTTGGTTTAAGGGATGTCATGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAAGGAATTTGCAAGATAATGTCCTCGTTAGCCAATACGATGACAGTTTATTATGTTCATATCATGCTGGGGCAAAAGGTCACTCTATTGACCAGTGCCCTCATTTCTCTCAGAAGGTACAGGAATTATTAGATTCTCATTTCCTAATAGTCTCACAGAAGGTAGTTGGAGAATCAAAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGGTTTCTCTGGAACGAAAGCCATTAACAATCTTTTATAAGGAAAAACCCAGTACTACCACTTCCAAACCAAAACCAATTACCATACAGGTTCCATCTCCATTTGAGTATTAAAGTTCAAAAGCAGTACTATGGAGTTATGAATACAAGGTACTTTTTGAGTCTGTACCAGTCCCTATAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCAGAAGCTTTATTGAAGTACAATAGCAAGGAAAAAGGAAAAGTCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAGAGGAGCCAGAATCTGAAGATGACATCCAAGAGTTTTTAAGACTTGTAAAATAAAGTGATTATAAAGTAATTGAACAGTTGGACAAAACGCCTGCTAGAATCTCTATTTTGCCTTATTATTATCTTCAGACCTGCATCGCAAAACTCTAATGAATATCCTGAACCAGACTTATGTTCCATCAGACATTACAACAGACAATTTAGATAACATCGTTGGCAGTATAACAGCATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCGGAAGGCATGGGTCACACAAAGGCTATCCTAGAAATGCCACCATCGTGCACCCAAAAAGAAGTTAGAGGATTTTTGGGAAGGCTAAACTATATCGCAAGGTTTATATCACATCTAACTGCAACATGTGAGCCCATCTTTAAGCTACTTCGTAAGAGTGATGCAGAAGTATGGAATGAAGACTGTCAAAAGGCATTCGAAAAGGTCAAACAATACTTACAGAATCCTCCTGTGCTAGTCCCTCCGACTCCAGGTCGCCCGCTTATTTTGTATCTTACTGTGACAGAAAGTTCAATGGGATGTGTACTGGGACAACATGATGATTCAGCCAAAAAGGAGCAGACTATATATTACTTGAGCAAGAAGTTCACCAGTTGTGAGACAAGATATTCTTTGCTTGAAAAGACGTGTTGTGCACTGGCATGGGCTGCCCGTCGTTTAAGGCCATACATGTTATATTATACGACATGGCTTATCTCAAAGATGGACCCCATAAAGTACATTTTTGAAAAACCGTCTCTTTCAGGCAGAATTGCAAAGTGGCAAGTTCTCTTATCTGAATATGATATAGTCTATGTTACTCGAAAGTCAATCAAAGGAAGTACACTAGCTGACTACTTAGCTGAGCAACCCATAGATGACTATGAGCCAATGAAATTTGATTTTCCTGATGAATTGGTCTCTTCCTTAGCAAAAGTAGAAGAAATACCGAATTCAAAGGCATGGACAATGCTGTTTGATGGAGCCTCCAATGAATTAGGTCATGGAATAGGTGTCATTTTGATTTCACCAGAAGGAAAGTTATTCCCTTTGACAGCCAAGTTAAATTTTGATTGTACTCATAATGTGGCCGAATACGAAGCTTGCTCTATGGGTATCCAGGCAACATTAGATATGAAAATCAAGAAGCTGCGAGTTTTAGGAGATTCCATGTTGGTAATTCACCAGTTAAGGGAAGAATGGGAAACAAGAGACGCTAAACTTCTCCCATACAAAAAGCTAATAATGGAATTGTCGCAAAAGTTCGATAAAGTTACTTTTGGTTATCTACCAAGGGAAAGTAATCAGGTAGCAGATGCTTTAGCCACATTGGGGGTCTTATTTAGCATAGACCTCAATCAGGAGGTACAACCTATCAAAATTGAAAAGCGAGATGCTCTGGCCACTTGCATGGCTATTGAAGAAGAGTCTGATGGTAAACCGTGGTATTTTGACATTAAAAAGTTTATTAAATGTTGAGAATATCCATTGAATGCCTCAGAGAATGATAAGGGCACACTTAGAAAGTTAGCAATGAAATTCTTCTTGAACGGAGAAGTACTTTACAAAATAAATCATGACATGGTACTCTTAAGATGTGTAGATGCGACAGAGGCAAATAAAATCATGAAAGAAACTCACGAAGGAGTTTGCGGAACTCGTGCAAATGGACATATGATGGCTAGACAAGTATTAAGATCTGGTTATTACTGGTTAACTATGGAAAAAGATTGCACTAAGCATGCGAGAGAGTGCCACAAATGTCAGATATATGCAGACAAAGCCCACGCACCTGCATCTCAGTTACATGTTATGACAGCTCTTTGGCCTTTTTCTATGTGGGGAATGGATGTGATAGGCCCCATCGAGCCTAAAGCCTCGAATGGACATCGTTTTATTTTGGTAGCAATTGATTACTTCACCAAGTGGGTGGAAGCAATGTCTTATCGAGAGGTGACAAAGACAGTTGTCATTAAGTTCATAAAAAAAGAGATTATTTGCCGTTATGGTCTTCCTGAAACTATAGTGACTGATAACGCTCGAAATTTGAATAATAAATTGATGAAGGAGTTGTGTGAACAGTTCAAGATCAAGCACCTCAACTCAACTCCCTATAGGCCAAAAATGAATGGAGCAGTGGAAGCCGCTAACAAGAATATAAAAAGAATCGTGCAAAAGATGACGGTAACATATAAGGATTGGCATGAAACGCTTCCTTTTGCACTACATGGTTATCGCACATCAGTTCGGACTTCAACTGGGGCAACGCCATTTTCTCTAGTCTACGGTATGGAGGTTGTTCTTCCTATTGAGGTAGAGATTCCATCCTTGCGAGTTCTTATGGATGCTAAACTAAAAGAAGCAGAATAGGTCCAAAACCGCTATGAACAACTAAATTTTGTGGAAGAAAAAAGACTAACAGCATTATGCAGAGGTCAACTATATCAAAAACGGATGACAAGAGCTTAAGACAAGAAGGTACGCCCCAGAGTTTTCAGAGCAGGAGATCTGGTTTTAAGGCGATTTCTCCCGTTTCAGAAAGATCACCGAGGGAAATGGACTCCAAATTATGAAGGACCCTATGTAGTAGAAAAAGCTTTCTTTGGAGGAGTTTTGATCTTGACCAATATGGATGGGGACCGACTGCCTAATCCAGTAAACTCGGATCATGTGTGA

mRNA sequence

ATGATAAACAAAGTTAACCATGGTAACATAAGTCAGTTGCCGCATCCAAACTCTGGAGTTCCTCATTATCCACATAATTATCATGCACCACCTCATCCATATTATCAACCTTACGTAAATGATGCAGCAGTCCAATATTATCCCCCTCCTCCTCAAAATCAATGCTCTTATGTGAATCAGGGGTACCAGCCTCAAGATGTGGATGAGGTTGGTTTAAGGGATGTCATGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAAGGAATTTGCAAGATAATGTCCTCGTTAGCCAATACGATGACAGTTTATTATGTTCATATCATGCTGGGGCAAAAGGTCACTCTATTGACCAGTGCCCTCATTTCTCTCAGAAGGTACAGGAATTATTAGATTCTCATTTCCTAATAGTCTCACAGAAGGTAGTTGGAGAATCAAAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCAGAAGCTTTATTGAAGTACAATAGCAAGGAAAAAGGAAAAGTCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAGAGGAGCCAGAATCTGAAGATGACATCCAAGAGTTTTTAAGACTTACTTATGTTCCATCAGACATTACAACAGACAATTTAGATAACATCGTTGGCAGTATAACAGCATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCGGAAGGCATGGGTCACACAAAGGCTATCCTAGAAATGCCACCATCGTGCACCCAAAAAGAAAAAGATCACCGAGGGAAATGGACTCCAAATTATGAAGGACCCTATGTAGTAGAAAAAGCTTTCTTTGGAGGAGTTTTGATCTTGACCAATATGGATGGGGACCGACTGCCTAATCCAGTAAACTCGGATCATGTGTGA

Coding sequence (CDS)

ATGATAAACAAAGTTAACCATGGTAACATAAGTCAGTTGCCGCATCCAAACTCTGGAGTTCCTCATTATCCACATAATTATCATGCACCACCTCATCCATATTATCAACCTTACGTAAATGATGCAGCAGTCCAATATTATCCCCCTCCTCCTCAAAATCAATGCTCTTATGTGAATCAGGGGTACCAGCCTCAAGATGTGGATGAGGTTGGTTTAAGGGATGTCATGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAAGGAATTTGCAAGATAATGTCCTCGTTAGCCAATACGATGACAGTTTATTATGTTCATATCATGCTGGGGCAAAAGGTCACTCTATTGACCAGTGCCCTCATTTCTCTCAGAAGGTACAGGAATTATTAGATTCTCATTTCCTAATAGTCTCACAGAAGGTAGTTGGAGAATCAAAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCAGAAGCTTTATTGAAGTACAATAGCAAGGAAAAAGGAAAAGTCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAGAGGAGCCAGAATCTGAAGATGACATCCAAGAGTTTTTAAGACTTACTTATGTTCCATCAGACATTACAACAGACAATTTAGATAACATCGTTGGCAGTATAACAGCATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCGGAAGGCATGGGTCACACAAAGGCTATCCTAGAAATGCCACCATCGTGCACCCAAAAAGAAAAAGATCACCGAGGGAAATGGACTCCAAATTATGAAGGACCCTATGTAGTAGAAAAAGCTTTCTTTGGAGGAGTTTTGATCTTGACCAATATGGATGGGGACCGACTGCCTAATCCAGTAAACTCGGATCATGTGTGA

Protein sequence

MINKVNHGNISQLPHPNSGVPHYPHNYHAPPHPYYQPYVNDAAVQYYPPPPQNQCSYVNQGYQPQDVDEVGLRDVMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQKVQELLDSHFLIVSQKVVGESKREHEIDAAEEFSTDNINEIGGTTRSGKCYTPEALLKYNSKEKGKVKLSDVIDCRIEEPLLVRNQEVEEPESEDDIQEFLRLTYVPSDITTDNLDNIVGSITASSSITFTDDEIPPEGMGHTKAILEMPPSCTQKEKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV

Homology

[Close]

BLAST of Lsi01G018730 vs. ExPASy TrEMBL
Match: A0A6J1BU14 (uncharacterized protein LOC111004780 OS=Momordica charantia OX=3673 GN=LOC111004780 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-28
Identity = 89/255 (34.90%), Postives = 128/255 (50.20%), Query Frame = 0


Query: 83  EELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQKVQELLDS 142
           EELF  L  +  +    L  N+   +YD S  C +HAGAKGHS++QC  F ++VQELLDS
Sbjct: 170 EELFENLLGSGYVSVEYLCPNLKYKEYDGSQTCPFHAGAKGHSLEQCNRFQKRVQELLDS 229

Query: 143 HFLIVSQKVVGESKREHEIDAAEEFSTDNIN----------------------------- 202
             L V++  + +     E     E S+D++                              
Sbjct: 230 KVLTVTKSQLKKRTNVVEDILVAEGSSDSLKPKPLTIFYCEKLDAPSCSRKPITITVPAA 289

Query: 203 -EIGGTTRSGKCYTPEALL--------------------KYNSKEKGKVKLSDVIDCRIE 262
            E+ G TR+ +CYTP++LL                    K    +KGK KL+  I   + 
Sbjct: 290 FEVRGLTRTERCYTPDSLLKRVNEPASEKNKEKASEKKEKAEEDKKGKTKLNKDICDELV 349

Query: 263 EPLLVRNQEVEEPESEDDIQEFLRL-------TYVPSDITTDNLDNIVGSITASSSITFT 281
           E ++V++   ++  SE++ Q+FL+L        +V  DIT DNL N+VG+ITASSSITFT
Sbjct: 350 EAIVVKDASPKQSVSEEETQDFLKLVKQSEYKAFVSQDITVDNLSNVVGNITASSSITFT 409

[Close]

BLAST of Lsi01G018730 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.0e-25
Identity = 100/336 (29.76%), Postives = 139/336 (41.37%), Query Frame = 0


Query: 75  VMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQ 134
           V  + T  EELF IL  +  +    L  N+    YD+SL C +HAGAKGH+++QC  F  
Sbjct: 392 VADITTPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLTCPFHAGAKGHALEQCNSFRM 451

Query: 135 KVQELLDSHFLIVSQK-------------------VVGES-------------------- 194
            VQELLDS  L V+                       G S                    
Sbjct: 452 IVQELLDSKILTVANSHQKKGINVVEDVSVAEGSIAEGSSDALKPKRLTIFYSEKPDAPN 511

Query: 195 ------------------------KREHEIDAAEEFST-----DNINEIGGTTRSGKCYT 254
                                   K E ++   ++ S+     DNI  +GG T +G+CYT
Sbjct: 512 CSRKPITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPPLPVDNITGVGGLTXTGRCYT 571

Query: 255 PEALLKYNSK---------------------EKGKVKLSDVIDCRIEEPLLVRNQEVEEP 281
           P++LLK  S+                     +KGK KL + +   + E ++V++   ++ 
Sbjct: 572 PDSLLKRVSETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDVHDELVEAIVVKDVSPKQH 631

[Close]

BLAST of Lsi01G018730 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.9e-25
Identity = 103/357 (28.85%), Postives = 148/357 (41.46%), Query Frame = 0


Query: 49  PPPQNQCSYVNQGYQPQDVDEVGLRDVMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQ 108
           P P +Q   +N   + Q+++      V  + T   ELF IL  +  +    L  N+    
Sbjct: 434 PLPNHQNVQIN-AIECQEIESKS--KVADIRTPMVELFEILLGSGYVSVEYLCPNLKYKG 493

Query: 109 YDDSLLCSYHAGAKGHSIDQCPHFSQKVQELLDSHFL------------IVSQKVVGES- 168
           YD+SL C +HAGAKGHS++QC  F  KVQELLDS  L            IV    V E  
Sbjct: 494 YDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKGINIVEDVSVAEGS 553

Query: 169 ---------------------------------------------KREHEIDAAEEFST- 228
                                                        K + ++   ++ S+ 
Sbjct: 554 SDALKPKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSP 613

Query: 229 ----DNINEIGGTTRSGKCYTPEALL---------------------KYNSKEKGKVKLS 281
               DNI  +GG TR+G+CYTP++LL                     K    +KGK KL 
Sbjct: 614 PLPIDNITGVGGLTRTGRCYTPDSLLKCVNETTSEKNKEKASEKKKEKVEEDKKGKAKLH 673

[Close]

BLAST of Lsi01G018730 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-11
Identity = 72/252 (28.57%), Postives = 108/252 (42.86%), Query Frame = 0


Query: 98   RNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQKVQELLDSHFLIVSQKVVGESKR 157
            R++   V+V    + ++C Y       S D   + + K+   L  HF I   K    +  
Sbjct: 1627 RDVTKGVVVKFIKNEIICRYGLPQTIIS-DNARNLNNKLMSELCEHFKI---KHFNSTPY 1686

Query: 158  EHEIDAAEEFSTDNINEI----GGTTRSGKCYTPEALLKYNSKEKGKV---------KLS 217
              +++ A E +  NI  I      T R      P AL  Y +  +             + 
Sbjct: 1687 RPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMK 1746

Query: 218  DVIDCRIEEPLLVRNQEVEEPESEDDIQEFLRLTYVPSDITTDNLDNIVGSITASSSITF 277
             V+   +E P L    E +  E+E   + + +L +V     T       G +     +  
Sbjct: 1747 AVLPIEVEIPSLRVIMEAKLQEAEWVQRRYEQLNFVEEKRLTALCR---GQLYQRRMMKA 1806

Query: 278  TDDEIPPEGMGHTKAILEMPPSCTQKEKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDG 337
             D ++ P        +L++       +KDHRGKWT NYEGP+VV+KAF GG L+L NMDG
Sbjct: 1807 YDKKVHPRRFREGDLVLKI---ILPLQKDHRGKWTANYEGPFVVKKAFSGGALVLANMDG 1866

HSP 2 Score: 123.6 bits (309), Expect = 1.5e-24
Identity = 100/331 (30.21%), Postives = 136/331 (41.09%), Query Frame = 0


Query: 75  VMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQ 134
           V  + T   ELF IL  +  I    L        YD+SL C +H GAKGHS++QC  F  
Sbjct: 497 VADITTPMXELFEILLGSGYISVEYLCPK--YKGYDESLTCXFHXGAKGHSLEQCNXFRM 556

Query: 135 KVQELLDSHFL------------IVSQKVVGES--------------------------- 194
           KVQELLDS  L            +V   +V E                            
Sbjct: 557 KVQELLDSKILTXANSHXKKXTNVVEDILVAEGSSDSLKPKPLTIFYREKPDAPSCSRKP 616

Query: 195 -------------------KREHEIDAAEEFST-----DNINEIGGTTRSGKCYTPEALL 254
                              K E ++   ++ S+     DNI  +GG TR+G+CYTP++LL
Sbjct: 617 XXITVPXPFEYKSSKAVPWKYECKVTVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLL 676

Query: 255 ---------------------KYNSKEKGKVKLSDVIDCRIEEPLLVRNQEVEEPESEDD 281
                                K    +KGK KL +     + E ++V++   ++P SE++
Sbjct: 677 KRVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDARDELVEAIVVKDVSPKQPMSEEE 736

[Close]

BLAST of Lsi01G018730 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-12
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 291  EKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
            +KDHRGKWTPNYEGP+VV+KAF GG L+L NMDG    NPV +DHV
Sbjct: 2214 QKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGTEFXNPVKADHV 2259

HSP 2 Score: 118.6 bits (296), Expect = 4.9e-23
Identity = 74/231 (32.03%), Postives = 113/231 (48.92%), Query Frame = 0


Query: 74  DVMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFS 133
           ++  ++   E LF  LF    +    L  N+    YD+S  C +H G  GH + QC  F 
Sbjct: 521 ELHEIVMPMEALFEGLFEAGYVSHEYLDPNIRYEGYDESRHCIFHRGVAGHVVQQCQKFR 580

Query: 134 QKVQELLDSHFLIVSQKVVGESKREHEIDAAEEFSTDNINEIGGTTRSGKCYTPEAL--- 193
            KVQ+L+DS  L V   + G                DNI  I G TRSG+CY P+ L   
Sbjct: 581 SKVQQLMDSKILTV---ITGP-------------LVDNITGISGITRSGRCYKPDNLTVP 640

Query: 194 -----LKYNSKEKGKVKLSDVIDCRIEEPLLVRNQEVEEPESEDDIQEFLRL-------- 253
                L+   K + +       D  +E P++ ++ E ++  ++++  EFL++        
Sbjct: 641 SNGLILEQGRKNEKRNAKEHCKDQDVEMPIIAKDIEYKKLVTDEEANEFLKIVKQKPRRK 700

Query: 254 --------TYVPSDITTDNLDNIVGSITASSSITFTDDEIPPEGMGHTKAI 281
                    +V  DI+ +    I+G+IT+S+SI FTDDEIPPEG+GHTKA+
Sbjct: 701 VLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKAL 735

[Close]

BLAST of Lsi01G018730 vs. NCBI nr
Match: XP_022131653.1 (uncharacterized protein LOC111004780 [Momordica charantia])

HSP 1 Score: 136.0 bits (341), Expect = 6.2e-28
Identity = 89/255 (34.90%), Postives = 128/255 (50.20%), Query Frame = 0


Query: 83  EELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQKVQELLDS 142
           EELF  L  +  +    L  N+   +YD S  C +HAGAKGHS++QC  F ++VQELLDS
Sbjct: 170 EELFENLLGSGYVSVEYLCPNLKYKEYDGSQTCPFHAGAKGHSLEQCNRFQKRVQELLDS 229

Query: 143 HFLIVSQKVVGESKREHEIDAAEEFSTDNIN----------------------------- 202
             L V++  + +     E     E S+D++                              
Sbjct: 230 KVLTVTKSQLKKRTNVVEDILVAEGSSDSLKPKPLTIFYCEKLDAPSCSRKPITITVPAA 289

Query: 203 -EIGGTTRSGKCYTPEALL--------------------KYNSKEKGKVKLSDVIDCRIE 262
            E+ G TR+ +CYTP++LL                    K    +KGK KL+  I   + 
Sbjct: 290 FEVRGLTRTERCYTPDSLLKRVNEPASEKNKEKASEKKEKAEEDKKGKTKLNKDICDELV 349

Query: 263 EPLLVRNQEVEEPESEDDIQEFLRL-------TYVPSDITTDNLDNIVGSITASSSITFT 281
           E ++V++   ++  SE++ Q+FL+L        +V  DIT DNL N+VG+ITASSSITFT
Sbjct: 350 EAIVVKDASPKQSVSEEETQDFLKLVKQSEYKAFVSQDITVDNLSNVVGNITASSSITFT 409

[Close]

BLAST of Lsi01G018730 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 125.6 bits (314), Expect = 8.3e-25
Identity = 100/336 (29.76%), Postives = 139/336 (41.37%), Query Frame = 0


Query: 75  VMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQ 134
           V  + T  EELF IL  +  +    L  N+    YD+SL C +HAGAKGH+++QC  F  
Sbjct: 392 VADITTPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLTCPFHAGAKGHALEQCNSFRM 451

Query: 135 KVQELLDSHFLIVSQK-------------------VVGES-------------------- 194
            VQELLDS  L V+                       G S                    
Sbjct: 452 IVQELLDSKILTVANSHQKKGINVVEDVSVAEGSIAEGSSDALKPKRLTIFYSEKPDAPN 511

Query: 195 ------------------------KREHEIDAAEEFST-----DNINEIGGTTRSGKCYT 254
                                   K E ++   ++ S+     DNI  +GG T +G+CYT
Sbjct: 512 CSRKPITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPPLPVDNITGVGGLTXTGRCYT 571

Query: 255 PEALLKYNSK---------------------EKGKVKLSDVIDCRIEEPLLVRNQEVEEP 281
           P++LLK  S+                     +KGK KL + +   + E ++V++   ++ 
Sbjct: 572 PDSLLKRVSETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDVHDELVEAIVVKDVSPKQH 631

[Close]

BLAST of Lsi01G018730 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-24
Identity = 103/357 (28.85%), Postives = 148/357 (41.46%), Query Frame = 0


Query: 49  PPPQNQCSYVNQGYQPQDVDEVGLRDVMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQ 108
           P P +Q   +N   + Q+++      V  + T   ELF IL  +  +    L  N+    
Sbjct: 434 PLPNHQNVQIN-AIECQEIESKS--KVADIRTPMVELFEILLGSGYVSVEYLCPNLKYKG 493

Query: 109 YDDSLLCSYHAGAKGHSIDQCPHFSQKVQELLDSHFL------------IVSQKVVGES- 168
           YD+SL C +HAGAKGHS++QC  F  KVQELLDS  L            IV    V E  
Sbjct: 494 YDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKGINIVEDVSVAEGS 553

Query: 169 ---------------------------------------------KREHEIDAAEEFST- 228
                                                        K + ++   ++ S+ 
Sbjct: 554 SDALKPKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSP 613

Query: 229 ----DNINEIGGTTRSGKCYTPEALL---------------------KYNSKEKGKVKLS 281
               DNI  +GG TR+G+CYTP++LL                     K    +KGK KL 
Sbjct: 614 PLPIDNITGVGGLTRTGRCYTPDSLLKCVNETTSEKNKEKASEKKKEKVEEDKKGKAKLH 673

[Close]

BLAST of Lsi01G018730 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-11
Identity = 72/252 (28.57%), Postives = 108/252 (42.86%), Query Frame = 0


Query: 98   RNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQKVQELLDSHFLIVSQKVVGESKR 157
            R++   V+V    + ++C Y       S D   + + K+   L  HF I   K    +  
Sbjct: 1627 RDVTKGVVVKFIKNEIICRYGLPQTIIS-DNARNLNNKLMSELCEHFKI---KHFNSTPY 1686

Query: 158  EHEIDAAEEFSTDNINEI----GGTTRSGKCYTPEALLKYNSKEKGKV---------KLS 217
              +++ A E +  NI  I      T R      P AL  Y +  +             + 
Sbjct: 1687 RPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMK 1746

Query: 218  DVIDCRIEEPLLVRNQEVEEPESEDDIQEFLRLTYVPSDITTDNLDNIVGSITASSSITF 277
             V+   +E P L    E +  E+E   + + +L +V     T       G +     +  
Sbjct: 1747 AVLPIEVEIPSLRVIMEAKLQEAEWVQRRYEQLNFVEEKRLTALCR---GQLYQRRMMKA 1806

Query: 278  TDDEIPPEGMGHTKAILEMPPSCTQKEKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDG 337
             D ++ P        +L++       +KDHRGKWT NYEGP+VV+KAF GG L+L NMDG
Sbjct: 1807 YDKKVHPRRFREGDLVLKI---ILPLQKDHRGKWTANYEGPFVVKKAFSGGALVLANMDG 1866

HSP 2 Score: 124.0 bits (310), Expect = 2.4e-24
Identity = 100/331 (30.21%), Postives = 136/331 (41.09%), Query Frame = 0


Query: 75  VMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFSQ 134
           V  + T   ELF IL  +  I    L        YD+SL C +H GAKGHS++QC  F  
Sbjct: 497 VABITTPMXELFEILLGSGYISVEYLCPK--YKGYDESLTCXFHXGAKGHSLEQCNXFRM 556

Query: 135 KVQELLDSHFL------------IVSQKVVGES--------------------------- 194
           KVQELLDS  L            +V   +V E                            
Sbjct: 557 KVQELLDSKILTXANSHXKKXTNVVEDILVAEGSSDSLKPKPLTIFYREKPDAPSCSRKP 616

Query: 195 -------------------KREHEIDAAEEFST-----DNINEIGGTTRSGKCYTPEALL 254
                              K E ++   ++ S+     DNI  +GG TR+G+CYTP++LL
Sbjct: 617 XXITVPXPFEYKSSKAVPWKYECKVTVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLL 676

Query: 255 ---------------------KYNSKEKGKVKLSDVIDCRIEEPLLVRNQEVEEPESEDD 281
                                K    +KGK KL +     + E ++V++   ++P SE++
Sbjct: 677 KRVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDARDELVEAIVVKDVSPKQPMSEEE 736

[Close]

BLAST of Lsi01G018730 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-11
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 291  EKDHRGKWTPNYEGPYVVEKAFFGGVLILTNMDGDRLPNPVNSDHV 337
            +KDHRGKWTPNYEGP+VV+KAF GG L+L NMDG    NPV +DHV
Sbjct: 2214 QKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGTEFXNPVKADHV 2259

HSP 2 Score: 118.6 bits (296), Expect = 1.0e-22
Identity = 74/231 (32.03%), Postives = 113/231 (48.92%), Query Frame = 0


Query: 74  DVMRMITSKEELFRILFNNRLIEQRNLQDNVLVSQYDDSLLCSYHAGAKGHSIDQCPHFS 133
           ++  ++   E LF  LF    +    L  N+    YD+S  C +H G  GH + QC  F 
Sbjct: 521 ELHEIVMPMEALFEGLFEAGYVSHEYLDPNIRYEGYDESRHCIFHRGVAGHVVQQCQKFR 580

Query: 134 QKVQELLDSHFLIVSQKVVGESKREHEIDAAEEFSTDNINEIGGTTRSGKCYTPEAL--- 193
            KVQ+L+DS  L V   + G                DNI  I G TRSG+CY P+ L   
Sbjct: 581 SKVQQLMDSKILTV---ITGP-------------LVDNITGISGITRSGRCYKPDNLTVP 640

Query: 194 -----LKYNSKEKGKVKLSDVIDCRIEEPLLVRNQEVEEPESEDDIQEFLRL-------- 253
                L+   K + +       D  +E P++ ++ E ++  ++++  EFL++        
Sbjct: 641 SNGLILEQGRKNEKRNAKEHCKDQDVEMPIIAKDIEYKKLVTDEEANEFLKIVKQKPRRK 700

Query: 254 --------TYVPSDITTDNLDNIVGSITASSSITFTDDEIPPEGMGHTKAI 281
                    +V  DI+ +    I+G+IT+S+SI FTDDEIPPEG+GHTKA+
Sbjct: 701 VLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKAL 735

The following BLAST results are available for this feature:

BLAST of Lsi01G018730 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G018730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BU14	3.0e-28	34.90	uncharacterized protein LOC111004780 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1CNY7	4.0e-25	29.76	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]
A0A6J1E2J7	6.9e-25	28.85	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1E2J7	2.5e-11	28.57	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1D099	5.1e-12	71.74	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]

BLAST of Lsi01G018730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131653.1	6.2e-28	34.90	uncharacterized protein LOC111004780 [Momordica charantia]	[more]
XP_022143495.1	8.3e-25	29.76	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]
XP_022158986.1	1.4e-24	28.85	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022158986.1	5.2e-11	28.57	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022147189.1	1.1e-11	71.74	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]

BLAST of Lsi01G018730 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018730.1	Lsi01G018730.1	mRNA