Lsi01G018670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G018670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	COX2_CUA domain-containing protein
Location	chr01: 20697900 .. 20698404 (-)
RNA-Seq Expression	Lsi01G018670
Synteny	Lsi01G018670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGCACGAGAAGTCCCCCTCTAGGGTGTTTGGTCCCCTTCCCAACAATTGTACCTTGTCTTGGGGCGTCTTTGGCTTTACGAGAGAAAGCCCGCCAGAGAAAAAAGTCTTTCTCTTCCCGTCCCGGATCATATTCCGGTGCGCCCACAGAAGAGGAAATCGCAATGCATCTTGCTCAGCAGGCGTAGCTTGGAGTGGGAGTGTAGCGTGGGTAAGGTAAGGAGGCCGCCAGAGAGGAAGCCAAACCGGCCTATTAAGCGCAGCTAAGCTAATATGCGCCGGAGAAAGCCAGGTGCCGGAGGTAAGCTCTATTCGGCCCGGAGCATTGATTCCCTATAACGAATAGGCTAGCTCGAGATCTCAATTGCCTATCCTGTGCTCGAGAAGGTCCCCCAGTTCCTCGGCAGCACCTCGAGGTGCATTTTGTTGTCTTACATGAGACTCGGGATATTCCTCACTCCATGGCATGGCACCTTTCGCTCATCCAAGCAAAGCGAGATTGA

mRNA sequence

AAAAGGCACGAGAAGTCCCCCTCTAGGGTGTTTGGTCCCCTTCCCAACAATTGTACCTTGTCTTGGGGCGTCTTTGGCTTTACGAGAGAAAGCCCGCCAGAGAAAAAAGTCTTTCTCTTCCCGTCCCGGATCATATTCCGGTGCGCCCACAGAAGAGGAAATCGCAATGCATCTTGCTCAGCAGGCGTAGCTTGGAGTGGGAGTGTAGCGTGGGTAAGGCTAGCTCGAGATCTCAATTGCCTATCCTGTGCTCGAGAAGGTCCCCCAGTTCCTCGGCAGCACCTCGAGGTGCATTTTGTTGTCTTACATGAGACTCGGGATATTCCTCACTCCATGGCATGGCACCTTTCGCTCATCCAAGCAAAGCGAGATTGA

Coding sequence (CDS)

AAAAGGCACGAGAAGTCCCCCTCTAGGGTGTTTGGTCCCCTTCCCAACAATTGTACCTTGTCTTGGGGCGTCTTTGGCTTTACGAGAGAAAGCCCGCCAGAGAAAAAAGTCTTTCTCTTCCCGTCCCGGATCATATTCCGGTGCGCCCACAGAAGAGGAAATCGCAATGCATCTTGCTCAGCAGGCGTAGCTTGGAGTGGGAGTGTAGCGTGGGTAAGGCTAGCTCGAGATCTCAATTGCCTATCCTGTGCTCGAGAAGGTCCCCCAGTTCCTCGGCAGCACCTCGAGGTGCATTTTGTTGTCTTACATGAGACTCGGGATATTCCTCACTCCATGGCATGGCACCTTTCGCTCATCCAAGCAAAGCGAGATTGA

Protein sequence

KRHEKSPSRVFGPLPNNCTLSWGVFGFTRESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVRLARDLNCLSCAREGPPVPRQHLEVHFVVLHETRDIPHSMAWHLSLIQAKRD

Homology

[Close]

BLAST of Lsi01G018670 vs. ExPASy TrEMBL
Match: A0A385G2A5 (Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp20 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.8e-24
Identity = 57/68 (83.82%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 30  ESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVRLARDLNCLSCAREGPP 89
           E  P  KVFLF S IIFRC HRRGNRNAS SAGVAWSGSVAWVRL   LNCLSCAREGPP
Sbjct: 40  ERKPAIKVFLFSSWIIFRCVHRRGNRNASFSAGVAWSGSVAWVRLTLSLNCLSCAREGPP 99

Query: 90  VPRQHLEV 98
           VPRQHLEV
Sbjct: 100 VPRQHLEV 107

[Close]

BLAST of Lsi01G018670 vs. ExPASy TrEMBL
Match: A0A0A0L6E8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088940 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.5e-20
Identity = 66/133 (49.62%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 29  RESPPEKKVFLFPSRIIFRCAHRRGNRNASC----SAGVAWSGSVAW------------- 88
           RESPP KKV LFP  I   C  R   R   C       + W  SVA              
Sbjct: 65  RESPPPKKVCLFPLGI---CEVRPQKRKEQCILLSRPSLEWECSVAHGARLELSGSLNGT 124

Query: 89  ---------------------VRLARDLNCLSCAREGPPVPRQHLEVHFVVLHETRDIPH 124
                                 RLARDLNCLSCAREGPPVPRQHLEVHF VL ETRDIPH
Sbjct: 125 PTGLLSAAKLICPRSGESQVPERLARDLNCLSCAREGPPVPRQHLEVHFDVLDETRDIPH 184

[Close]

BLAST of Lsi01G018670 vs. ExPASy TrEMBL
Match: A0A3Q7YAX9 (uncharacterized protein LOC113784115 OS=Cicer arietinum OX=3827 GN=LOC113784115 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.5e-12
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 73  RLARDLNCLSCAREGPPVPRQHLEVHFVVLHETRDIPHSMA 114
           RLA  LNCLSCAREGPPVPRQHLEVH VVLHETR IPHSMA
Sbjct: 23  RLALSLNCLSCAREGPPVPRQHLEVHLVVLHETRGIPHSMA 63

[Close]

BLAST of Lsi01G018670 vs. ExPASy TrEMBL
Match: A0A6A5L987 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00038484 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 36/44 (81.82%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 30  ESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVR 74
           E  P  KVFLF S IIFRC HRRGNRNAS SAGVAWSGSVAWVR
Sbjct: 141 ERKPAIKVFLFSSWIIFRCVHRRGNRNASFSAGVAWSGSVAWVR 184

[Close]

BLAST of Lsi01G018670 vs. ExPASy TrEMBL
Match: A0A072V832 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_2g040760 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.9e-10
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 30  ESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVRLA 76
           E  P  KVF+F S   FRC HRRGNRNASCSAGVAWSGSVAWVR++
Sbjct: 60  EIKPAIKVFIFSSWRRFRCVHRRGNRNASCSAGVAWSGSVAWVRIS 105

[Close]

BLAST of Lsi01G018670 vs. NCBI nr
Match: YP_009526567.1 (hypothetical protein [Ammopiptanthus mongolicus] >AXV54326.1 hypothetical protein [Ammopiptanthus mongolicus])

HSP 1 Score: 120.6 bits (301), Expect = 9.9e-24
Identity = 57/68 (83.82%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 30  ESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVRLARDLNCLSCAREGPP 89
           E  P  KVFLF S IIFRC HRRGNRNAS SAGVAWSGSVAWVRL   LNCLSCAREGPP
Sbjct: 40  ERKPAIKVFLFSSWIIFRCVHRRGNRNASFSAGVAWSGSVAWVRLTLSLNCLSCAREGPP 99

Query: 90  VPRQHLEV 98
           VPRQHLEV
Sbjct: 100 VPRQHLEV 107

[Close]

BLAST of Lsi01G018670 vs. NCBI nr
Match: WP_207187239.1 (hypothetical protein, partial [Salinicoccus roseus])

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 18 CTLSWGVFGFTRESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGV 64
          CTLSWGVFGFTRESPPEKK+ +FPSR+I  C HRRGNRNASCSAGV
Sbjct: 1  CTLSWGVFGFTRESPPEKKMLIFPSRVILWCVHRRGNRNASCSAGV 46

[Close]

BLAST of Lsi01G018670 vs. NCBI nr
Match: XP_027186080.1 (uncharacterized protein LOC113784115 [Cicer arietinum])

HSP 1 Score: 81.6 bits (200), Expect = 5.1e-12
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 73  RLARDLNCLSCAREGPPVPRQHLEVHFVVLHETRDIPHSMA 114
           RLA  LNCLSCAREGPPVPRQHLEVH VVLHETR IPHSMA
Sbjct: 23  RLALSLNCLSCAREGPPVPRQHLEVHLVVLHETRGIPHSMA 63

[Close]

BLAST of Lsi01G018670 vs. NCBI nr
Match: KAF1856618.1 (hypothetical protein Lal_00038484 [Lupinus albus])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-10
Identity = 36/44 (81.82%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 30  ESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVR 74
           E  P  KVFLF S IIFRC HRRGNRNAS SAGVAWSGSVAWVR
Sbjct: 141 ERKPAIKVFLFSSWIIFRCVHRRGNRNASFSAGVAWSGSVAWVR 184

[Close]

BLAST of Lsi01G018670 vs. NCBI nr
Match: KEH37513.1 (hypothetical protein MTR_2g040760 [Medicago truncatula])

HSP 1 Score: 74.3 bits (181), Expect = 8.1e-10
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 30  ESPPEKKVFLFPSRIIFRCAHRRGNRNASCSAGVAWSGSVAWVRLA 76
           E  P  KVF+F S   FRC HRRGNRNASCSAGVAWSGSVAWVR++
Sbjct: 60  EIKPAIKVFIFSSWRRFRCVHRRGNRNASCSAGVAWSGSVAWVRIS 105

The following BLAST results are available for this feature:

BLAST of Lsi01G018670 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G018670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A385G2A5	4.8e-24	83.82	Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp20 PE=4 S...	[more]
A0A0A0L6E8	2.5e-20	49.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088940 PE=4 SV=1	[more]
A0A3Q7YAX9	2.5e-12	90.24	uncharacterized protein LOC113784115 OS=Cicer arietinum OX=3827 GN=LOC113784115 ...	[more]
A0A6A5L987	2.3e-10	81.82	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00038484 PE=4 SV=1	[more]
A0A072V832	3.9e-10	73.91	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_2g040760 PE=4 SV=1	[more]

BLAST of Lsi01G018670 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009526567.1	9.9e-24	83.82	hypothetical protein [Ammopiptanthus mongolicus] >AXV54326.1 hypothetical protei...	[more]
WP_207187239.1	2.9e-15	84.78	hypothetical protein, partial [Salinicoccus roseus]	[more]
XP_027186080.1	5.1e-12	90.24	uncharacterized protein LOC113784115 [Cicer arietinum]	[more]
KAF1856618.1	4.8e-10	81.82	hypothetical protein Lal_00038484 [Lupinus albus]	[more]
KEH37513.1	8.1e-10	73.91	hypothetical protein MTR_2g040760 [Medicago truncatula]	[more]

BLAST of Lsi01G018670 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018670.1	Lsi01G018670.1	mRNA