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Lsi01G018620 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAACTAGTGAATGGTGGGATGAACAAATAAAGGTGATCTTTGATGTTTTCTAAAAATTATAATTTTCAATATAACTAGTTAATGGTAGAGTGAATAGTGTGGTGACAATACTATTATTATTTTATAGGTCGTTCCTGAGGCAGCGAAATATCGTGCAAAAGGGTTACAAAATGTAGAACAGTTAGACATTCTTTTCAAAGATGTTGTAGTAACTGGAGGAGGAGCATGGGCTCCATCTCAAGGTTTTGTATCTAAGTTTGTAAGTGATAGAGTTAGAGGTTTTACAGATGATATAGTAGGAGAGATAAAGGTCAATGAGAGTGAAAATGTTGAAAGTACGGCCAATGACGTTGATATAAGTGAAACTTATACTCAAGGGAGAGAGAAAAAGAGGAAAAAAATTGGTTCAGGAGCTGGATCTTCCAAGATGTCAGACAAATTAGATCGTTTGTGTGATGTTATCGAGTACAGAAGAAGAGATTTGCCGAGATGCAACATTCTTGAAGTAATGGATACTTTAACGAGCTTGCCTGAGATTGTAGAAGGTGACGAGTTGTATATGAAGACTACTGAAATTTTTACCAAAAGAGAAAATAGAGAAATGTTCGTTGCGATAAAGAAGCCTGAAACAAAAATTGAATGGCTTAAGCAAAAAAAAGTTTAACATTGATACTTTTTGGTATTTAGGTCTTTTAGGTGTGAACTTCCTTGGATAAAAAAAGCTAGAAAAGTTTGTTCAATCTTGTATTTGTTAACTGGAATTGAGTTTAATCCTCCATTTGTTGTTTCGTTTTCGTGAACTATTGATTGTGTTTAACTGTGTTTATGGTTGATAATGGTGATATTATTGGTTGAGGGTGTTTGGATTGTATATAATTGTGCTTATGGTTGATTGTGTTTTTTTTTGTTAACAGAAATGTCGTCTGATATGATTGATAATGATGATACTAATAGCTCTTTAGACGATTGTGACGATGAAGATTATGACCATTTAGTTGAAATTGGATGTACAATGGTTGTGAGTCATTTCCAAAAATATGTTGATAAAGAACCATGCAGGACTTCATTTCACACAGGTTTCAAGTTTGTTTGAGAGGTTTTAAATGGTCATGATGTTAGGTGTCATCAACAATTTAGGATGGAAAAACACGTGTTTACTCAATTATTGATGACACTTAATCAAAATTATGACCTCAAAAGTAGTTCAGATGTGCCAATGGAAGAAGCTCTAGCTATGTTCCTTATCACATTAGGGCATGGTTTAACTAATAGAATGATTCAAGAAAGGTTTCAACACTCAGGTCTGTTTCTAGATGGTTTGGTTTGGTATTAGATGTTGTTTGTCATTTAGCTACGGACATCATTAAACCAAGTGATCTGCAATTCAGAGCAATTCCAAGTAAAATTAGAAGTGATGATCGATATTGGCCATACTCTAAAAATTGCATAGGAGCAATTGATGGCACCCATATATCAGTTGTTCCTCCTAAAGATAAACAAATACCATATATTGGTAGAAAAGGTATTGCTACCCAAAATGTTATGGCCGTATGTGATTTTAATATGTGCTTCACTTTTACTTGGGCTGGTTGGGAAGGTGCTGCTCATGACTCACGTATCTTCATGGAAGCTTTATAAAGGCCTCATTTAAATTTTCCTCATCCACCTAAAGGTTTGCTTTGAAAATTTTGATACTAAAATTTGCATGGTTTATAATTTTTTTAAAAAAATTTACTGTGCATTTTACAGGTAAATATTATCTCGTTGATGTCGGATATCCACAAATGAAAGGATATCTAGGCCCTTATAAAGGCGAAAGATATCACCTTCCTGATTTTCGTCGTGGGAGTCAACCAAGAGGTAAGAAGGAAATATTTAACCATAGACATTCATCTTTAAGGTGTACAATTGAGAGGACATTTGGTGTTTGGAAAAATAGATGGAAAATGTTACGCCATATGCATAGTTTTCCTTTTGATAAACAAGTGAAGGTTGTTGTTGCATCAATGGCACTTCATAATTTTGTACGAACTCATTCTACAACTGACTTTGAGTTCAAGCTTTTTGACGATGACGAAGATTTTCTCCCTTCAAGTGATGACCGAAATGAGTTGAGTGTTGCTGAAGAAAGTGAAATTTCTTGTCATGGAAGGGAGATGGAAGAGGAGTGGGAGAAAATTGCAAGACTTCTTATATCTCGTTAATGTTTTTGTTATACAGTTTGTATTTCAATAGATAATATCTAGTTTAAGTATTTTGTAATGATACAAAGATTTCTAGATTGGATGAGATACATGTTTTGAATTTTCTTTTGTTTTTATTATGTATATTTTTCTT ATGCAACTAGTCGTTCCTGAGGCAGCGAAATATCGTGCAAAAGGGTTACAAAATGTAGAACAGTTAGACATTCTTTTCAAAGATGTTGTAGTAACTGGAGGAGGAGCATGGGCTCCATCTCAAGGTTTTGTATCTAAGTTTGTAAGTGATAGAGTTAGAGGTTTTACAGATGATATAGTAGGAGAGATAAAGGTCAATGAGAGTGAAAATGTTGAAAGTACGGCCAATGACGTTGATATAAGTGAAACTTATACTCAAGGGAGAGAGAAAAAGAGGAAAAAAATTGGTTCAGGAGCTGGATCTTCCAAGATGTCAGACAAATTAGATCGTTTGTGTGATGTTATCGAGTACAGAAGAAGAGATTTGCCGAGATGCAACATTCTTGAAGTAATGGATACTTTAACGAGCTTGCCTGAGATTGTAGAAGGTGACGAGTTGTATATGAAGACTACTGAAATTTTTACCAAAAGAGAAAATAGAGAAATGTTCGTTGCGATAAAGAAGCCTGAAACAAAAATTGAATGGCTTAAGCAAAAAAAAGTTTAACATTGATACTTTTTGGTATTTAGGTCTTTTAGGTGTGAACTTCCTTGGATAAAAAAAGCTAGAAAAGTTTGTTCAATCTTGTATTTGTTAACTGGAATTGAGTTTAATCCTCCATTTGTTGTTTCGTTTTCGTGAACTATTGATTGTGTTTAACTGTGTTTATGGTTGATAATGGTGATATTATTGGTTGAGGGTGTTTGGATTGTATATAATTGTGCTTATGGTTGATTGTGTTTTTTTTTGTTAACAGAAATGTCGTCTGATATGATTGATAATGATGATACTAATAGCTCTTTAGACGATTGTGACGATGAAGATTATGACCATTTAGTTGAAATTGGATGTACAATGGTTGTGAGTCATTTCCAAAAATATGTTGATAAAGAACCATGCAGGACTTCATTTCACACAGGTTTCAAGTTTGTTTGAGAGGTTTTAAATGGTCATGATGTTAGGTGTCATCAACAATTTAGGATGGAAAAACACGTGTTTACTCAATTATTGATGACACTTAATCAAAATTATGACCTCAAAAGTAGTTCAGATGTGCCAATGGAAGAAGCTCTAGCTATGTTCCTTATCACATTAGGGCATGGTTTAACTAATAGAATGATTCAAGAAAGGTTTCAACACTCAGGTCTGTTTCTAGATGGTTTGGTTTGGTATTAGATGTTGTTTGTCATTTAGCTACGGACATCATTAAACCAAGTGATCTGCAATTCAGAGCAATTCCAAGTAAAATTAGAAGTGATGATCGATATTGGCCATACTCTAAAAATTGCATAGGAGCAATTGATGGCACCCATATATCAGTTGTTCCTCCTAAAGATAAACAAATACCATATATTGGTAGAAAAGGTATTGCTACCCAAAATGTTATGGCCGTATGTGATTTTAATATGTGCTTCACTTTTACTTGGGCTGGTTGGGAAGGTGCTGCTCATGACTCACGTATCTTCATGGAAGCTTTATAAAGGCCTCATTTAAATTTTCCTCATCCACCTAAAGGTAAATATTATCTCGTTGATGTCGGATATCCACAAATGAAAGGATATCTAGGCCCTTATAAAGGCGAAAGATATCACCTTCCTGATTTTCGTCGTGGGAGTCAACCAAGAGGTAAGAAGGAAATATTTAACCATAGACATTCATCTTTAAGGTGTACAATTGAGAGGACATTTGGTGTTTGGAAAAATAGATGGAAAATGTTACGCCATATGCATAGTTTTCCTTTTGATAAACAAGTGAAGGTTGTTGTTGCATCAATGGCACTTCATAATTTTGTACGAACTCATTCTACAACTGACTTTGAGTTCAAGCTTTTTGACGATGACGAAGATTTTCTCCCTTCAAGTGATGACCGAAATGAGTTGAGTGTTGCTGAAGAAAGTGAAATTTCTTGTCATGGAAGGGAGATGGAAGAGGAGTGGGAGAAAATTGCAAGACTTCTTATATCTCGTTAATGTTTTTGTTATACAGTTTGTATTTCAATAGATAATATCTAGTTTAAGTATTTTGTAATGATACAAAGATTTCTAGATTGGATGAGATACATGTTTTGAATTTTCTTTTGTTTTTATTATGTATATTTTTCTT ATGCAACTAGTCGTTCCTGAGGCAGCGAAATATCGTGCAAAAGGGTTACAAAATGTAGAACAGTTAGACATTCTTTTCAAAGATGTTGTAGTAACTGGAGGAGGAGCATGGGCTCCATCTCAAGGTTTTGTATCTAAGTTTGTAAGTGATAGAGTTAGAGGTTTTACAGATGATATAGTAGGAGAGATAAAGGTCAATGAGAGTGAAAATGTTGAAAGTACGGCCAATGACGTTGATATAAGTGAAACTTATACTCAAGGGAGAGAGAAAAAGAGGAAAAAAATTGGTTCAGGAGCTGGATCTTCCAAGATGTCAGACAAATTAGATCGTTTGTGTGATGTTATCGAGTACAGAAGAAGAGATTTGCCGAGATGCAACATTCTTGAAGTAATGGATACTTTAACGAGCTTGCCTGAGATTGTAGAAGGTGACGAGTTGTATATGAAGACTACTGAAATTTTTACCAAAAGAGAAAATAGAGAAATGTTCGTTGCGATAAAGAAGCCTGAAACAAAAATTGAATGGCTTAAGCAAAAAAAAGTTTAA MQLVVPEAAKYRAKGLQNVEQLDILFKDVVVTGGGAWAPSQGFVSKFVSDRVRGFTDDIVGEIKVNESENVESTANDVDISETYTQGREKKRKKIGSGAGSSKMSDKLDRLCDVIEYRRRDLPRCNILEVMDTLTSLPEIVEGDELYMKTTEIFTKRENREMFVAIKKPETKIEWLKQKKV Homology
BLAST of Lsi01G018620 vs. ExPASy Swiss-Prot
Match: Q9FFJ8 (L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=LIMYB PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06 Identity = 46/179 (25.70%), Postives = 84/179 (46.93%), Query Frame = 0
BLAST of Lsi01G018620 vs. ExPASy TrEMBL
Match: A0A6J1DZU8 (L10-interacting MYB domain-containing protein-like OS=Momordica charantia OX=3673 GN=LOC111026126 PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 2.0e-50 Identity = 117/183 (63.93%), Postives = 138/183 (75.41%), Query Frame = 0
BLAST of Lsi01G018620 vs. ExPASy TrEMBL
Match: A0A5A7UN70 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00110 PE=4 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 7.7e-47 Identity = 109/183 (59.56%), Postives = 136/183 (74.32%), Query Frame = 0
BLAST of Lsi01G018620 vs. ExPASy TrEMBL
Match: A0A1S3AT15 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LOC103482538 PE=4 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 7.7e-47 Identity = 109/183 (59.56%), Postives = 136/183 (74.32%), Query Frame = 0
BLAST of Lsi01G018620 vs. ExPASy TrEMBL
Match: A0A6J1EN01 (L10-interacting MYB domain-containing protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435828 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 2.2e-46 Identity = 109/187 (58.29%), Postives = 136/187 (72.73%), Query Frame = 0
BLAST of Lsi01G018620 vs. ExPASy TrEMBL
Match: A0A0A0KKV6 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G167170 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 2.5e-45 Identity = 106/183 (57.92%), Postives = 136/183 (74.32%), Query Frame = 0
BLAST of Lsi01G018620 vs. NCBI nr
Match: XP_022159819.1 (L10-interacting MYB domain-containing protein-like [Momordica charantia] >XP_022159820.1 L10-interacting MYB domain-containing protein-like [Momordica charantia]) HSP 1 Score: 208.8 bits (530), Expect = 4.0e-50 Identity = 117/183 (63.93%), Postives = 138/183 (75.41%), Query Frame = 0
BLAST of Lsi01G018620 vs. NCBI nr
Match: XP_038874429.1 (L10-interacting MYB domain-containing protein-like [Benincasa hispida] >XP_038874430.1 L10-interacting MYB domain-containing protein-like [Benincasa hispida] >XP_038874431.1 L10-interacting MYB domain-containing protein-like [Benincasa hispida] >XP_038874432.1 L10-interacting MYB domain-containing protein-like [Benincasa hispida]) HSP 1 Score: 205.3 bits (521), Expect = 4.5e-49 Identity = 112/180 (62.22%), Postives = 134/180 (74.44%), Query Frame = 0
BLAST of Lsi01G018620 vs. NCBI nr
Match: XP_008436966.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo] >KAA0055085.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 196.8 bits (499), Expect = 1.6e-46 Identity = 109/183 (59.56%), Postives = 136/183 (74.32%), Query Frame = 0
BLAST of Lsi01G018620 vs. NCBI nr
Match: XP_022929169.1 (L10-interacting MYB domain-containing protein-like [Cucurbita moschata] >XP_022929170.1 L10-interacting MYB domain-containing protein-like [Cucurbita moschata]) HSP 1 Score: 195.3 bits (495), Expect = 4.6e-46 Identity = 109/187 (58.29%), Postives = 136/187 (72.73%), Query Frame = 0
BLAST of Lsi01G018620 vs. NCBI nr
Match: KAG7017091.1 (L10-interacting MYB domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 193.7 bits (491), Expect = 1.3e-45 Identity = 108/187 (57.75%), Postives = 136/187 (72.73%), Query Frame = 0
BLAST of Lsi01G018620 vs. TAIR 10
Match: AT5G05800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 1.5e-07 Identity = 46/179 (25.70%), Postives = 84/179 (46.93%), Query Frame = 0
BLAST of Lsi01G018620 vs. TAIR 10
Match: AT5G05800.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 1.5e-07 Identity = 46/179 (25.70%), Postives = 84/179 (46.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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