Lsi01G018610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G018610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box domain-containing protein
Location	chr01: 20370051 .. 20371399 (+)
RNA-Seq Expression	Lsi01G018610
Synteny	Lsi01G018610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGAGTAAAAGGAGGAATCAAAGGCAGAGGAAAAAACGAAAGTTGAAGGATGGAAGGGGCAATTTTATTATGGATTGGGCAGGGCTCCCGCATGATATTCTTGTCATGATCTTTAAGCAACTGTCTCTTGTGGATTGTATGTCGATTGATAGTGTTTGTAAGTTGTGCAGCAATATCCTTGCTTAACTTCCAAATTTGAAGCAGGGTGGATTTCCATGGCTTTTGATGTCAGGTAAAAAAGATAGAGAGATGAGAACTTGTGCTAGCATTCTAGACAATCGAATGTGGGAAATGGAGCTTCTTGAGGCATATGGAGCTTATGTATGGGGATCTTTTCAGGACTGACGAATAATAGTGAAGGATCTTGGTTGCTATTCTCTTGAAGTTAGTTTGTTGAATCCATTCTCTACAAGGAAGATTAACCTGCCAAGGCTTTGGAACTTCTACCAAATGGACCTTGATACTACATAGCTAACTACATTTGTATTAAGGTTGTGAGAGATTTAACCCACTATATCCCTTTGGCCTTATTACATGCCTTCTTTGACCTTTTAATCTATAATAGTCATGTTAAGGGAGAAGAAGAAGTATCAGGAATAAAACGTCACAAGAGACGAGATCTAAAATAGGATATAGTTCAGGGAGAAGAAGAAGTATCGAGACTAAAACGTTAGGAGAGCCAAGATCTAAAATAGGATATAGTTCAAGAAGAAGAAGTATAAGGACTAAAACATTACGAGAGCCAAGATCTAAAATAGGATATAATTCAGGGAGAAGAAGAAACATAGGGACTTAAATGTCACGAAAGCCGAGATCTAAAATAGGATATAGTTTACGAAGAAGAAGAAGTATAGGGACTAAAACGTTACGAAAGTCGGATCTAAAATAGGATATAGTTTAGGGAGAAGAAGAAGTAGATGTAGATATAGATAATCTTTAACTGCTCCCTTTGAAAATCATGTGCAAATTGACGGTAGAATTACACATACTTTGCTGTAAGTTTTAAGGAAAAAAAAGTCATAGAAAAAAGTTCTAAAAATCATTAAAATAATTATATTGGTAAAATCACAGTGGAATATATGTTTTTTCCACCATTACTGGAACCTGCTGAGAATATAAACAAGAAACAATCAAAACAACCTTTACTTAAGAGATGAAGAAGAGAGGATAGTTTAGTGGACGTTTTGAAATTCTTTATATATGTGTGTGTTTATTTCTTTTTCTTTTTCTTTTCTTTTAGGGATTGTTCCAACTGTTATTTTTATATATTATATTTGATGAGATTGTAAAACAATATCCCTGGATTTGTACCTTTTTCTTTCATAACATGAAAAGTTTGCTGC

mRNA sequence

ATGTTGAAGAGTAAAAGGAGGAATCAAAGGCAGAGGAAAAAACGAAAGTTGAAGGATGGAAGGGGCAATTTTATTATGGATTGGGCAGGGCTCCCGCATGATATTCTTGTCATGATCTTTAAGCAACTGTCTCTTGTGGATTGTATGTCGATTGATAGTGTTTGTAAAAAAGATAGAGAGATGAGAACTTGTGCTAGCATTCTAGACAATCGAATGTGGGAAATGGAGCTTCTTGAGGCATATGGAGCTTATGTATGGGGATCTTTTCAGGACTGACGAATAATAGTGAAGGATCTTGGTTGCTATTCTCTTGAAGTTAGTTTGTTGAATCCATTCTCTACAAGGAAGATTAACCTGCCAAGGCTTTGGAACTTCTACCAAATGGACCTTGATACTACATAGCTAACTACATTTGTATTAAGGTTGTGAGAGATTTAACCCACTATATCCCTTTGGCCTTATTACATGCCTTCTTTGACCTTTTAATCTATAATAGTCATGTTAAGGGAGAAGAAGAAGTATCAGGAATAAAACGTCACAAGAGACGAGATCTAAAATAGGATATAGTTCAGGGAGAAGAAGAAGTATCGAGACTAAAACGTTAGGAGAGCCAAGATCTAAAATAGGATATAGTTCAAGAAGAAGAAGTATAAGGACTAAAACATTACGAGAGCCAAGATCTAAAATAGGATATAATTCAGGGAGAAGAAGAAACATAGGGACTTAAATGTCACGAAAGCCGAGATCTAAAATAGGATATAGTTTACGAAGAAGAAGAAGTATAGGGACTAAAACGTTACGAAAGTCGGATCTAAAATAGGATATAGTTTAGGGAGAAGAAGAAGTAGATGTAGATATAGATAATCTTTAACTGCTCCCTTTGAAAATCATGTGCAAATTGACGGTAGAATTACACATACTTTGCTGTAAGTTTTAAGGAAAAAAAAGTCATAGAAAAAAGTTCTAAAAATCATTAAAATAATTATATTGGTAAAATCACAGTGGAATATATGTTTTTTCCACCATTACTGGAACCTGCTGAGAATATAAACAAGAAACAATCAAAACAACCTTTACTTAAGAGATGAAGAAGAGAGGATAGTTTAGTGGACGTTTTGAAATTCTTTATATATGTGTGTGTTTATTTCTTTTTCTTTTTCTTTTCTTTTAGGGATTGTTCCAACTGTTATTTTTATATATTATATTTGATGAGATTGTAAAACAATATCCCTGGATTTGTACCTTTTTCTTTCATAACATGAAAAGTTTGCTGC

Coding sequence (CDS)

ATGTTGAAGAGTAAAAGGAGGAATCAAAGGCAGAGGAAAAAACGAAAGTTGAAGGATGGAAGGGGCAATTTTATTATGGATTGGGCAGGGCTCCCGCATGATATTCTTGTCATGATCTTTAAGCAACTGTCTCTTGTGGATTGTATGTCGATTGATAGTGTTTGTAAAAAAGATAGAGAGATGAGAACTTGTGCTAGCATTCTAGACAATCGAATGTGGGAAATGGAGCTTCTTGAGGCATATGGAGCTTATGTATGGGGATCTTTTCAGGACTGA

Protein sequence

MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCKKDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD

Homology

[Close]

BLAST of Lsi01G018610 vs. ExPASy TrEMBL
Match: A0A6J1H0R2 (F-box protein At1g49360-like OS=Cucurbita moschata OX=3662 GN=LOC111458880 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 80/116 (68.97%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           MLK KRRNQRQRKKRKLKDG+G+F MDWAGLP DILVMIF++LSLVDCMS+DSVCK    
Sbjct: 1   MLKCKRRNQRQRKKRKLKDGQGDFAMDWAGLPRDILVMIFEKLSLVDCMSVDSVCKQWSN 60

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCAS+LDN+ WEMELLEAYGAYVWGSFQD
Sbjct: 61  ILAELPNWKRGGFPWLLMSGQKDREMRTCASVLDNQSWEMELLEAYGAYVWGSFQD 116

[Close]

BLAST of Lsi01G018610 vs. ExPASy TrEMBL
Match: A0A6J1IRF4 (F-box protein At3g56470-like OS=Cucurbita maxima OX=3661 GN=LOC111479302 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.7e-34
Identity = 80/116 (68.97%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           MLK KRRNQRQRKKRKLKDG+GN  MDWAGLP DILVMIF++LSLVDCMS+DSVCK    
Sbjct: 1   MLKCKRRNQRQRKKRKLKDGKGNSPMDWAGLPRDILVMIFEKLSLVDCMSVDSVCKQWSN 60

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCAS+LDN+ WEMELLEAYGAYVWGSFQD
Sbjct: 61  ILAELPNWKRGGFPWLLMSGQKDREMRTCASVLDNQSWEMELLEAYGAYVWGSFQD 116

[Close]

BLAST of Lsi01G018610 vs. ExPASy TrEMBL
Match: A0A1S4DWA3 (uncharacterized protein LOC103489302 OS=Cucumis melo OX=3656 GN=LOC103489302 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.6e-31
Identity = 74/116 (63.79%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVC----- 60
           M KSKRRNQRQRKKRKL+D RGN + DWAGLP DILVMIF+QLSLVDC+S+D+VC     
Sbjct: 1   MSKSKRRNQRQRKKRKLEDRRGNSVADWAGLPRDILVMIFEQLSLVDCISVDNVCKLWSN 60

Query: 61  --------------------KKDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                               KKDREMRTCASIL+NR+WE+EL EAYGAY+WGS QD
Sbjct: 61  ILSELPNWKRGGFPWLMMSGKKDREMRTCASILENRIWEIELHEAYGAYIWGSLQD 116

[Close]

BLAST of Lsi01G018610 vs. ExPASy TrEMBL
Match: A0A5D3CCV3 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001230 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.6e-31
Identity = 74/116 (63.79%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVC----- 60
           M KSKRRNQRQRKKRKL+D RGN + DWAGLP DILVMIF+QLSLVDC+S+D+VC     
Sbjct: 1   MSKSKRRNQRQRKKRKLEDRRGNSVADWAGLPRDILVMIFEQLSLVDCISVDNVCKLWSN 60

Query: 61  --------------------KKDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                               KKDREMRTCASIL+NR+WE+EL EAYGAY+WGS QD
Sbjct: 61  ILSELPNWKRGGFPWLMMSGKKDREMRTCASILENRIWEIELHEAYGAYIWGSLQD 116

[Close]

BLAST of Lsi01G018610 vs. ExPASy TrEMBL
Match: A0A0A0KT87 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610380 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.6e-31
Identity = 73/116 (62.93%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVC----- 60
           M KSKRRNQRQRKKRKL++GRGN  +DWA LP D+LVMIF+QLSLVDC+S+D+VC     
Sbjct: 109 MSKSKRRNQRQRKKRKLENGRGNSTVDWAALPRDVLVMIFEQLSLVDCISVDNVCKLWSN 168

Query: 61  --------------------KKDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                               KKDREMRTCASIL+NR+WE+EL EAYGAY+WGSFQD
Sbjct: 169 ILSELPNWKMGGFPWLMMSGKKDREMRTCASILENRIWEIELHEAYGAYIWGSFQD 224

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: KAG6601277.1 (F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34
Identity = 80/116 (68.97%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           MLK KRRNQRQRKKRKLKDG+G+F MDWAGLP DILVMIF++LSLVDCMS+DSVCK    
Sbjct: 1   MLKCKRRNQRQRKKRKLKDGQGDFAMDWAGLPRDILVMIFEKLSLVDCMSVDSVCKQWSN 60

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCAS+LDN+ WEMELLEAYGAYVWGSFQD
Sbjct: 61  ILAELPNWKRGGFPWLLMSGQKDREMRTCASVLDNQSWEMELLEAYGAYVWGSFQD 116

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: XP_022957505.1 (F-box protein At1g49360-like [Cucurbita moschata] >KAG7032065.1 F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34
Identity = 80/116 (68.97%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           MLK KRRNQRQRKKRKLKDG+G+F MDWAGLP DILVMIF++LSLVDCMS+DSVCK    
Sbjct: 1   MLKCKRRNQRQRKKRKLKDGQGDFAMDWAGLPRDILVMIFEKLSLVDCMSVDSVCKQWSN 60

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCAS+LDN+ WEMELLEAYGAYVWGSFQD
Sbjct: 61  ILAELPNWKRGGFPWLLMSGQKDREMRTCASVLDNQSWEMELLEAYGAYVWGSFQD 116

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: XP_023516457.1 (F-box protein At1g49360-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 4.5e-34
Identity = 80/116 (68.97%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           MLK KRRNQRQRKKRKLKDG+GN  MDWAGLP DILVMIF++LSLVDCMS+DSVCK    
Sbjct: 1   MLKCKRRNQRQRKKRKLKDGKGNSAMDWAGLPRDILVMIFEKLSLVDCMSVDSVCKQWSN 60

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCAS+LDN+ WEMELLEAYGAYVWGSFQD
Sbjct: 61  ILAELPNWKRGGFPWLLMSGQKDREMRTCASVLDNQSWEMELLEAYGAYVWGSFQD 116

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: XP_022979671.1 (F-box protein At3g56470-like [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 7.7e-34
Identity = 80/116 (68.97%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           MLK KRRNQRQRKKRKLKDG+GN  MDWAGLP DILVMIF++LSLVDCMS+DSVCK    
Sbjct: 1   MLKCKRRNQRQRKKRKLKDGKGNSPMDWAGLPRDILVMIFEKLSLVDCMSVDSVCKQWSN 60

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRTCAS+LDN+ WEMELLEAYGAYVWGSFQD
Sbjct: 61  ILAELPNWKRGGFPWLLMSGQKDREMRTCASVLDNQSWEMELLEAYGAYVWGSFQD 116

[Close]

BLAST of Lsi01G018610 vs. NCBI nr
Match: XP_038891474.1 (putative F-box protein At5g55150 [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 78/116 (67.24%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 1   MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK---- 60
           MLKSKRRNQRQRKKRKLKDGRG  IMDWAGLP DILV IF+QLSL DC+S+D+VCK    
Sbjct: 1   MLKSKRRNQRQRKKRKLKDGRGISIMDWAGLPRDILVSIFEQLSLADCVSVDNVCKLWSN 60

Query: 61  ---------------------KDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD 92
                                KDREMRT A+ILDNR+WE+ELLEAYGAYVWGSFQD
Sbjct: 61  ILAELPNWKRGGFPWLLMSGQKDREMRTSANILDNRIWEIELLEAYGAYVWGSFQD 116

The following BLAST results are available for this feature:

BLAST of Lsi01G018610 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G018610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H0R2	1.3e-34	68.97	F-box protein At1g49360-like OS=Cucurbita moschata OX=3662 GN=LOC111458880 PE=4 ...	[more]
A0A6J1IRF4	3.7e-34	68.97	F-box protein At3g56470-like OS=Cucurbita maxima OX=3661 GN=LOC111479302 PE=4 SV...	[more]
A0A1S4DWA3	6.6e-31	63.79	uncharacterized protein LOC103489302 OS=Cucumis melo OX=3656 GN=LOC103489302 PE=...	[more]
A0A5D3CCV3	6.6e-31	63.79	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001230...	[more]
A0A0A0KT87	6.6e-31	62.93	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610380 PE=4 ...	[more]

BLAST of Lsi01G018610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601277.1	2.7e-34	68.97	F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022957505.1	2.7e-34	68.97	F-box protein At1g49360-like [Cucurbita moschata] >KAG7032065.1 F-box/kelch-repe...	[more]
XP_023516457.1	4.5e-34	68.97	F-box protein At1g49360-like [Cucurbita pepo subsp. pepo]	[more]
XP_022979671.1	7.7e-34	68.97	F-box protein At3g56470-like [Cucurbita maxima]	[more]
XP_038891474.1	7.2e-32	67.24	putative F-box protein At5g55150 [Benincasa hispida]	[more]

BLAST of Lsi01G018610 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 27..66 e-value: 3.9E-8 score: 35.0
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 25..76 score: 9.126548
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 28..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018610.1	Lsi01G018610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding