Lsi01G018520 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G018520
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	(thale cress) hypothetical protein
Location	chr01: 19893420 .. 19893713 (-)
RNA-Seq Expression	Lsi01G018520
Synteny	Lsi01G018520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGCATCACCACCAAATCCCATAAAGCTCGACGGTCAAATGCAGCTGCTGCCGGACCCACCGCCGGCGACGCCGGAGCCATCTCACTCCACTCGTCACTCCATCGAGACGCTGGTGGTGCTGCTGGCGGCGATCACCATTTTGGGTGTCATTGCCCGAGTCTTTGCTCGCCTCTGTGGCGGAGGAACCGACATTGAAGGTTGGGTTGAAAGAAGTTGCAAGAGCTGCATTGACGGCGGCGTCCCTGCTCCGTCGCTGCCGCCGCCGGAAGTGGCGGAGGAGAAGAAGTGA

mRNA sequence

ATGTGGGCATCACCACCAAATCCCATAAAGCTCGACGGTCAAATGCAGCTGCTGCCGGACCCACCGCCGGCGACGCCGGAGCCATCTCACTCCACTCGTCACTCCATCGAGACGCTGGTGGTGCTGCTGGCGGCGATCACCATTTTGGGTGTCATTGCCCGAGTCTTTGCTCGCCTCTGTGGCGGAGGAACCGACATTGAAGGTTGGGTTGAAAGAAGTTGCAAGAGCTGCATTGACGGCGGCGTCCCTGCTCCGTCGCTGCCGCCGCCGGAAGTGGCGGAGGAGAAGAAGTGA

Coding sequence (CDS)

ATGTGGGCATCACCACCAAATCCCATAAAGCTCGACGGTCAAATGCAGCTGCTGCCGGACCCACCGCCGGCGACGCCGGAGCCATCTCACTCCACTCGTCACTCCATCGAGACGCTGGTGGTGCTGCTGGCGGCGATCACCATTTTGGGTGTCATTGCCCGAGTCTTTGCTCGCCTCTGTGGCGGAGGAACCGACATTGAAGGTTGGGTTGAAAGAAGTTGCAAGAGCTGCATTGACGGCGGCGTCCCTGCTCCGTCGCTGCCGCCGCCGGAAGTGGCGGAGGAGAAGAAGTGA

Protein sequence

MWASPPNPIKLDGQMQLLPDPPPATPEPSHSTRHSIETLVVLLAAITILGVIARVFARLCGGGTDIEGWVERSCKSCIDGGVPAPSLPPPEVAEEKK

Homology

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BLAST of Lsi01G018520 vs. ExPASy TrEMBL
Match: A0A0A0KWC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166970 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 1  MWASPPNPIKLDGQMQLLPDPPPATPEPSHSTRHSIETLVVLLAAITILGVIARVFARLC 60
          M A+PPN IKLDGQMQLLP+PP    EPSHSTRHS+ TL+VLLAAITILGVIARVFARLC
Sbjct: 1  MRAAPPNAIKLDGQMQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLC 60

Query: 61 GGGTD---IEGWVERSCKSCIDGGVPAPSLPPPEVAEEKK 98
          GGGTD   IEGWV+  C SCIDG  P    PP +VAEE+K
Sbjct: 61 GGGTDDDNIEGWVQTRCNSCIDGSSP----PPSQVAEEEK 93

[Close]

BLAST of Lsi01G018520 vs. ExPASy TrEMBL
Match: A0A5A7URI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold513G00170 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MWASPPNPIKLDGQMQLLPDPPPATPEPSHSTRHSIETLVVLLAAITILGVIARVFARLC 60
          M A PPN IKLDGQMQLLP+PP    EPSHSTRHS++TL+VLLAAITILGVIARVFARLC
Sbjct: 1  MRAPPPNAIKLDGQMQLLPEPP---AEPSHSTRHSVQTLLVLLAAITILGVIARVFARLC 60

Query: 61 GGGT-DIEGWVERSCKSCIDG-GVPAPSLPPPEVAEEKK 98
           GGT DIEGWV+  C SCIDG  +PA   PP EVAEE+K
Sbjct: 61 DGGTDDIEGWVQTRCNSCIDGSSLPA---PPSEVAEEEK 93

[Close]

BLAST of Lsi01G018520 vs. ExPASy TrEMBL
Match: A0A1S3CEC8 (uncharacterized protein LOC103499518 OS=Cucumis melo OX=3656 GN=LOC103499518 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MWASPPNPIKLDGQMQLLPDPPPATPEPSHSTRHSIETLVVLLAAITILGVIARVFARLC 60
          M A PPN IKLDGQMQLLP+PP    EPSHSTRHS++TL+VLLAAITILGVIARVFARLC
Sbjct: 1  MRAPPPNAIKLDGQMQLLPEPP---AEPSHSTRHSVQTLLVLLAAITILGVIARVFARLC 60

Query: 61 GGGT-DIEGWVERSCKSCIDG-GVPAPSLPPPEVAEEKK 98
           GGT DIEGWV+  C SCIDG  +PA   PP EVAEE+K
Sbjct: 61 DGGTDDIEGWVQTRCNSCIDGSSLPA---PPSEVAEEEK 93

[Close]

BLAST of Lsi01G018520 vs. ExPASy TrEMBL
Match: A0A6J1HVS2 (uncharacterized protein LOC111467296 OS=Cucurbita maxima OX=3661 GN=LOC111467296 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 1   MWASPPNPIKLDGQMQLLPDPPPAT-PEPSHSTRHSIETLVVLLAAITILGVIARVFARL 60
           MWA+P N      QMQ LPDP PAT  EPSHS + SI+TLVV+LA I ILGVIAR+ AR 
Sbjct: 1   MWATPAN------QMQPLPDPTPATATEPSHSVQ-SIQTLVVVLAVIIILGVIARILARF 60

Query: 61  CGGG---------TDIEGWVERSCKSCIDGGVPAPSLPPP---EVAEEKK 98
           CGG           DIEGWVER+C+SCIDGGV  P LPPP   E A+EKK
Sbjct: 61  CGGNHSGGGGDGENDIEGWVERTCRSCIDGGVATPPLPPPPPSEAADEKK 103

[Close]

BLAST of Lsi01G018520 vs. ExPASy TrEMBL
Match: A0A6J1EKU9 (uncharacterized protein LOC111435483 OS=Cucurbita moschata OX=3662 GN=LOC111435483 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-21
Identity = 67/109 (61.47%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MWASPPNPIKLDGQMQLLPDPPPAT-PEPSHSTRHSIETLVVLLAAITILGVIARVFARL 60
           MWA+       DGQMQ LPDP PAT  EPSHS + SI+TLVV+LA I ILGVIAR+ AR 
Sbjct: 1   MWAT------ADGQMQPLPDPTPATATEPSHSGQ-SIQTLVVVLAVIIILGVIARILARF 60

Query: 61  CGGG----------TDIEGWVERSCKSCIDGGV-PAPSLPPPEVAEEKK 98
           CGG            DIEGWVER+C+SCIDGGV   P  PPPE AEEKK
Sbjct: 61  CGGNHSGGGGGDGENDIEGWVERTCRSCIDGGVGTPPPPPPPEAAEEKK 102

[Close]

BLAST of Lsi01G018520 vs. NCBI nr
Match: KGN53864.2 (hypothetical protein Csa_019149 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-27
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 4  SPPNPIKLDGQMQLLPDPPPATPEPSHSTRHSIETLVVLLAAITILGVIARVFARLCGGG 63
          SPPN IKLDGQMQLLP+PP    EPSHSTRHS+ TL+VLLAAITILGVIARVFARLCGGG
Sbjct: 8  SPPNAIKLDGQMQLLPEPP---AEPSHSTRHSLHTLLVLLAAITILGVIARVFARLCGGG 67

Query: 64 TD---IEGWVERSCKSCIDGGVPAPSLPPPEVAEEKK 98
          TD   IEGWV+  C SCIDG  P    PP +VAEE+K
Sbjct: 68 TDDDNIEGWVQTRCNSCIDGSSP----PPSQVAEEEK 97

[Close]

BLAST of Lsi01G018520 vs. NCBI nr
Match: XP_008460761.1 (PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo] >KAA0056141.1 uncharacterized protein E6C27_scaffold697G00230 [Cucumis melo var. makuwa] >TYK14146.1 uncharacterized protein E5676_scaffold513G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MWASPPNPIKLDGQMQLLPDPPPATPEPSHSTRHSIETLVVLLAAITILGVIARVFARLC 60
          M A PPN IKLDGQMQLLP+PP    EPSHSTRHS++TL+VLLAAITILGVIARVFARLC
Sbjct: 1  MRAPPPNAIKLDGQMQLLPEPP---AEPSHSTRHSVQTLLVLLAAITILGVIARVFARLC 60

Query: 61 GGGT-DIEGWVERSCKSCIDG-GVPAPSLPPPEVAEEKK 98
           GGT DIEGWV+  C SCIDG  +PA   PP EVAEE+K
Sbjct: 61 DGGTDDIEGWVQTRCNSCIDGSSLPA---PPSEVAEEEK 93

[Close]

BLAST of Lsi01G018520 vs. NCBI nr
Match: XP_022967930.1 (uncharacterized protein LOC111467296 [Cucurbita maxima])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 1   MWASPPNPIKLDGQMQLLPDPPPAT-PEPSHSTRHSIETLVVLLAAITILGVIARVFARL 60
           MWA+P N      QMQ LPDP PAT  EPSHS + SI+TLVV+LA I ILGVIAR+ AR 
Sbjct: 1   MWATPAN------QMQPLPDPTPATATEPSHSVQ-SIQTLVVVLAVIIILGVIARILARF 60

Query: 61  CGGG---------TDIEGWVERSCKSCIDGGVPAPSLPPP---EVAEEKK 98
           CGG           DIEGWVER+C+SCIDGGV  P LPPP   E A+EKK
Sbjct: 61  CGGNHSGGGGDGENDIEGWVERTCRSCIDGGVATPPLPPPPPSEAADEKK 103

[Close]

BLAST of Lsi01G018520 vs. NCBI nr
Match: XP_022928636.1 (uncharacterized protein LOC111435483 [Cucurbita moschata] >KAG6603224.1 hypothetical protein SDJN03_03833, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033532.1 hypothetical protein SDJN02_03254, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.3 bits (277), Expect = 4.7e-21
Identity = 67/109 (61.47%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MWASPPNPIKLDGQMQLLPDPPPAT-PEPSHSTRHSIETLVVLLAAITILGVIARVFARL 60
           MWA+       DGQMQ LPDP PAT  EPSHS + SI+TLVV+LA I ILGVIAR+ AR 
Sbjct: 1   MWAT------ADGQMQPLPDPTPATATEPSHSGQ-SIQTLVVVLAVIIILGVIARILARF 60

Query: 61  CGGG----------TDIEGWVERSCKSCIDGGV-PAPSLPPPEVAEEKK 98
           CGG            DIEGWVER+C+SCIDGGV   P  PPPE AEEKK
Sbjct: 61  CGGNHSGGGGGDGENDIEGWVERTCRSCIDGGVGTPPPPPPPEAAEEKK 102

[Close]

BLAST of Lsi01G018520 vs. NCBI nr
Match: XP_034693668.1 (uncharacterized protein LOC117920325 [Vitis riparia])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 9   IKLDGQMQLLPDPPPATPEPSHSTRHSIETLVVLLAAITILGVIARVFARLCG------- 68
           +++D Q+  L   PPA  EPSHST  S+ETLVV+LA ITI+GVIA + ARLCG       
Sbjct: 10  VRMDEQLPPLVQAPPAVGEPSHSTHRSLETLVVVLAVITIVGVIAGIIARLCGGRHFGGN 69

Query: 69  GGTDIEGWVERSCKSCIDGGVPA-PSLPPPEVAEEKK 98
           G  DIEGWVER C+SCIDGG+PA P  PPP  AEE K
Sbjct: 70  GENDIEGWVERKCRSCIDGGIPAPPPPPPPPPAEESK 106

[Close]

BLAST of Lsi01G018520 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-20
Identity = 56/106 (52.83%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 10  KLDGQMQLLPD----PPPATPEPSHSTRH-SIETLVVLLAAITILGVIARVFARLC---- 69
           +LD Q+   P      PP+  +PSH++ H SIETLVV+LA ITIL V+A VFARLC    
Sbjct: 7   RLDDQLSTTPTTIYIDPPSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRH 66

Query: 70  ---GGGTDIEGWVERSCKSCIDGGVPA-------PSLPPPEVAEEK 97
              GG  DIEGWVER C+SCID G+PA       P  PPP  AEE+
Sbjct: 67  LSHGGDHDIEGWVERKCRSCIDAGIPAVSAAPSPPPPPPPATAEER 112

The following BLAST results are available for this feature:

BLAST of Lsi01G018520 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G018520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWC6	3.3e-28	73.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166970 PE=4 SV=1	[more]
A0A5A7URI4	1.2e-27	74.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEC8	1.2e-27	74.75	uncharacterized protein LOC103499518 OS=Cucumis melo OX=3656 GN=LOC103499518 PE=...	[more]
A0A6J1HVS2	1.0e-21	60.91	uncharacterized protein LOC111467296 OS=Cucurbita maxima OX=3661 GN=LOC111467296...	[more]
A0A6J1EKU9	2.3e-21	61.47	uncharacterized protein LOC111435483 OS=Cucurbita moschata OX=3662 GN=LOC1114354...	[more]

BLAST of Lsi01G018520 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53864.2	2.0e-27	74.23	hypothetical protein Csa_019149 [Cucumis sativus]	[more]
XP_008460761.1	2.6e-27	74.75	PREDICTED: uncharacterized protein LOC103499518 [Cucumis melo] >KAA0056141.1 unc...	[more]
XP_022967930.1	2.1e-21	60.91	uncharacterized protein LOC111467296 [Cucurbita maxima]	[more]
XP_022928636.1	4.7e-21	61.47	uncharacterized protein LOC111435483 [Cucurbita moschata] >KAG6603224.1 hypothet...	[more]
XP_034693668.1	1.4e-20	59.79	uncharacterized protein LOC117920325 [Vitis riparia]	[more]

BLAST of Lsi01G018520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57500.1	4.2e-20	52.83	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR33429:SF19	FISSION REGULATOR-LIKE PROTEIN	coord: 10..96
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 10..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018520.1	Lsi01G018520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane