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Lsi01G018360 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGAGCTTCACATTATTTCTTGAGATGGTTCATCAAAAACAAAAACCTAAACACATTGAGAGAGAGAGGGAAAAACCACACACGCAGCCGTAGGAACGAAAATTGAGGCGCCGGAATCTGAAGGTGAAAGCACGGCGTGGGTCTTCGGTGTAGAGGGCGGAACTCGCTGGCGGTGGCCGGTGGGTCTTTGGTTTCGGAGGTCAGAGCGGCGGGTTTTTTGGGTCTCAGTTCAGCGGCGACGGGGCAAATTACTGGCGTGTGGGTCTCGGTCAAGAGGCTGGGTAAAATCGTGGGTCACGATTTGAAGGGCTGGACAGTCGACTACAGAGACTGAGAGGCGGCGGTAAAGTCGAGTTTGTTATTCTCTTTCAAGAGAGTGTTATAGTTAGAGGGCGGTACCATGGTGAAGAACGACGGAGAAGAAGGGGGCGAGCTCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAAGACTTGAGGTTTTCCTTCAAACTAAGCATGAACTTGATTAATGGGTTAATTTGGACTTTTGTTTGATGTCGATTTCTACTATCGTTTTCCTGATGTGGTTAATTGTTGTTTTTCTTAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGGTTTGGAAAACTTCCCTATGTTTGAGAACAAACTTGCTACAATGAGTGTTTCGGACTTGAAAATTTTCTGTCAATAATACGACTTTTCTAGCATTCAATGAGCTTAAGGAAGTGAACGGAGAGTTTTTTTTTTTTTTTTTCCGGTAGATTGTTGATTTCCCAACAGAACTGCAGAACCATTTGGGTTCTCATGGGGTAGAAATAGAACCAAAAACCATTACTTGGATGATGAAATGTTAAAATTTCCTGCGGACTCTGGAGATGAGGGAGGCTGGCTGTAATATAGAGATGCTATTGCTGTTCTTCCACCTTGGAGTTATCCAAGGATATATGAATTTATTTAAATCCTTAGTTGCAGAGGACTGTTAGGTTTCAGACCTGCAAATATCAAACCTAACAAAGAATCCCCAAAACCAAACAGAGATATCTTCTCTTTTTTGTCAGCCTAAACGAGATCAAAACACAAAGTCCTCCCCAGTTCAATTTGAGAGTGTTGGAATTCCCTCTTTCCGCCTTTAGCTTCAGAATCACCAAGTTTTTCCTCCCTTCCGCAGGACCCCCAAAATTTCTCTTAAACCTCCATGGTGGTCCCCTGCTGGTTCCCATCCTCTAACTGAATTTGTTCCACGTCCCACTTTCTTTTCCCCCTTGTAGAATTCCCTTCTTACCCTTACGATAATAAGTATATGAATTGGGGATCTCACAAGGTCACCTTGGGTATTTAGGAGACCTGCACTTACATCTCTTTCCTTGAGCTACGAAGAATGATTTTTGAACTTAGTTGTACCTTCATCAGGATGACAAAGTTAGAAGGTGTTTGTGCAATTTCTTTTTTAGAAATAATAAGTCGAGCTTCAATTGAGATAAAAATTGAACGAATGTATAACGACATACATTGGTACAAAAAATGGCTCCAATCCAAAAGAATGAAACCCAACTGATAATTACAAAAAGCCTTAGCCATGGAAGCTCATTATGAAGCATTGGACCTAATAACCTCTCACAACTCATGACCTTACTTGAACAATATTTATTCTATAGGTTGTACAATTGTGCCCTTGAGTTCTAAAGAAAATAACCTCCCACAGCTCCCCTCAGATCTCTCAACACCTCCAAAAAGTCTACCATTCTTCTCAAGCCATATTCCCTGAAGAATGGCGAAGAAAGATGCAATTTAACTCTTCTCCTTGTAAGGGGAAAATAACAAAAACTCCTCCATCAAAGCCCTGCAATCCCGACTTGTTTCTTCACTTAAGCTCTGAGAAAAATTTTACAGCTTTAAGATTTTGGTCATACCACTTTCGCAAATGATGCAGATGATGGTAGGGAGGGTGAGGGGAAGGCGATTTAAGTTGTGAGAACTTGCCTCTAGCTTTTTGTTTCTGTTAATTTTAATTGTGAATCTCCCTAAGATTTTTTATATTTGTTTATTTATTTTTTTAAAATTTCTTTTCTTGATATATATTTTTTTATTCCGTGGGAGTGGAGCTCTATAAGAAAGCCATCAACACTCATGACAAGCTTCAAAGAAGAATGTGATAGGCCCCGATTGTCTAAAGTGTATATTCGAAGAAAGAAGAGAGGCTTGGGTGTGGGGCAAAATGGGCAAAATGAGGAAGGTTCAGAATGCTGTAAATTCTGTTACATAAATGAGAAGGGGGAATGTTGGTGTGGGTCCGTGAGAATTTTGTTAGTTAGCCTATAAGGGGCTGAGGGGTGGATATCGTTTTTAATTGCCAAATTAGTAAATATATAATTCAAGGATTATCAGAATGCCTTACATGGTTTCGTCTCCTCATTGGTGTTCTATTTGCAAACAACAATTAGAATCACAAAGTCACATTATGATATCTTGTACTTACGCTAGCACCTTTTGGAACCGCCTTACATGGTTTTGTCTTCTCATTGGTGCTCTATTTGCAAACAACAATTAGAATCACAAAGTCACCTTATGGTATCTTGTACGTACGCTAGCTCCTTTTGGAACTATCTCCTTTCAACATTGCACACGGCTCTCCTGGAAGATCCTGAATCTCTCCTATCCCATGCATTTGGAGGGCACATTTACTAAAAGGAAAAGAAGGCTTTTGGAAAATTTTCATTAGAGCATTCTGTTGGAGAATTTGGCTTCAAGAAAGGAATTAGAAGAATCTTCCATGAAAAAGGGCTCTCTTGTTATAGATTTTGTGATGCTATAGTTAACATCATTGTGACTTGGTGTAAATGCTCCCCTTATTCTATCCCTATACCTAAACAACTTATACTAGTCTTCAATAACCTGGAAAAGCCTTCTGGAATGATATTGGGGTTACCCTCTTCTTTTGTAATTTCATACCATCAATGAAATTGTTTCTAACCCCAAAGAAAAGAAAAATTATATATATAATAATATGTTGGCTCGAGCATATTATTGAGTTTTTGGCAAAATATGAGAAGTACAGTTGTTCCACATTGAAAAAATTCAAAGAAGTGATAGGCTTCAAGCACCATAGAAGGACTCTATGCCTTTGGTTTCAAGTCGTCCCAATTAGAAAAACTTTTAGTTTAGGTGTGCTAACTCTAGTTAAATTCCCTTTTATATTCTGTAGTTTGAGAGTAGGATTAAAGGGTGTGAGTGGTACAAAAGTTTTGAGAGAGTGCTCTTGTAATTGGGTTGGGAGAGAATTATTTTGTATGATTGTAATAATTTTTCATGTAATAGATTTTTTCTAGTCCCTGGTTTTTTCTTTGGTTTGGAGTTCGTTCTTTCACGTTAATTTTTGTGTTTTCAGTTTTATTGTTTTCTTCTAATTTCTCTGTTATTTTTTTGCTTATTCCTGCAATAGCAGTGGGAGGTTCTTCCCAACACATATATCTAATCATCCTTAAAAAAAATGCTACAAATTAGTCATCATGTATGTATTGTATTATATAAAGACTTTTATTGGATAAGTTGTGTAAAATATTATTGATTAGTGGAAACAAGGAAGAGAACGGCCTTTAGCGCATATATCTTTTTCTTCTATAGAATCTGGGATATATTCTCAAGAGTCAAAGTCCTAAATTATCTTGCAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGGCCGGTTGATGAACAGAATGATGATCACGAGGATGAGGATGAGGATGAGGATGAGGATGAGGAAGAGAAGCCATTGGCACCACTTTCTGGTATTTTACTAAGGATTGCATGTTAAAATATTAAGTGCATTTGATAAGCCATTTGCACCAGCTTACTTAGAAAACAGATCTGTTCAATGAATTAAAATGACATATTAGTTTCAAGTTCTTCTCCAATACAAGTGTGAAAACAAAGTATCCATCTAGATCAGATATTATTTATGTTCATAGGGAAGCTAAAAGTCAGGTTTATATGAAAAATAAGTGGGAAAGTTGATAAAATTGATAATGATATGCATTCTTTTAGAAAAACAAGAGTCCTCATTTCTATATACTCTGGAATTTGGAACAGTATTTTGATAATTGATTCTGGAAGTGTCATGTATGTTGCAGAGCAGATAAATGTTGCTTAGTTTTGATCCAAATGTACTTTTGGTTTTATCTTGTAGAGACAACAACGTACGACAGCGGAAATATCAAAGTTACTGTGACAACGAGTGAGGTATCTCGGGAAGAAGAATTCGATCTCACTGACAAGCCACAGACAGCAACAGCCCAATTGGTTGCAAAGGAAAAGAAACATAACCTGCCAATTACCAAAAAGAAGGCATTCAAGAAAGTTTCAAAACAGAGGTCAAGGCCAAAGTCTCGAAGTAAAAGAGAGAAAAGAAAAGGAAGGAACAAGAAATAGGTAATTATACTAAGCTATTTATTCACTCTTTACTAAATGTTCGTTGTGATATGATTTATACGTTATCTCATGAGAATATGGAGTGATCTTGAGCATTGGCTGTAGGGAGTTTGAGGGTCTTGAATTACTTTGTAATTGCTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCCTTTTTATGAGAAGCTAAAATGATTCATTCAGAACTCCAAGAAGAAAAAACAACATATCATCCAAGTATTGAAAAATTCTCGTATTACTTTACTG AAGAGCTTCACATTATTTCTTGAGATGGTTCATCAAAAACAAAAACCTAAACACATTGAGAGAGAGAGGGAAAAACCACACACGCAGCCGTAGGAACGAAAATTGAGGCGCCGGAATCTGAAGGTGAAAGCACGGCGTGGGTCTTCGGTGTAGAGGGCGGAACTCGCTGGCGGTGGCCGGTGGGTCTTTGGTTTCGGAGGTCAGAGCGGCGGGTTTTTTGGGTCTCAGTTCAGCGGCGACGGGGCAAATTACTGGCGTGTGGGTCTCGGTCAAGAGGCTGGGTAAAATCGTGGGTCACGATTTGAAGGGCTGGACAGTCGACTACAGAGACTGAGAGGCGGCGGTAAAGTCGAGTTTGTTATTCTCTTTCAAGAGAGTGTTATAGTTAGAGGGCGGTACCATGGTGAAGAACGACGGAGAAGAAGGGGGCGAGCTCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGGCCGGTTGATGAACAGAATGATGATCACGAGGATGAGGATGAGGATGAGGATGAGGATGAGGAAGAGAAGCCATTGGCACCACTTTCTGAGACAACAACGTACGACAGCGGAAATATCAAAGTTACTGTGACAACGAGTGAGGTATCTCGGGAAGAAGAATTCGATCTCACTGACAAGCCACAGACAGCAACAGCCCAATTGGTTGCAAAGGAAAAGAAACATAACCTGCCAATTACCAAAAAGAAGGCATTCAAGAAAGTTTCAAAACAGAGGTCAAGGCCAAAGTCTCGAAGTAAAAGAGAGAAAAGAAAAGGAAGGAACAAGAAATAGGTAATTATACTAAGCTATTTATTCACTCTTTACTAAATGTTCGTTGTGATATGATTTATACGTTATCTCATGAGAATATGGAGTGATCTTGAGCATTGGCTGTAGGGAGTTTGAGGGTCTTGAATTACTTTGTAATTGCTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCCTTTTTATGAGAAGCTAAAATGATTCATTCAGAACTCCAAGAAGAAAAAACAACATATCATCCAAGTATTGAAAAATTCTCGTATTACTTTACTG ATGGTGAAGAACGACGGAGAAGAAGGGGGCGAGCTCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGGCCGGTTGATGAACAGAATGATGATCACGAGGATGAGGATGAGGATGAGGATGAGGATGAGGAAGAGAAGCCATTGGCACCACTTTCTGAGACAACAACGTACGACAGCGGAAATATCAAAGTTACTGTGACAACGAGTGAGGTATCTCGGGAAGAAGAATTCGATCTCACTGACAAGCCACAGACAGCAACAGCCCAATTGGTTGCAAAGGAAAAGAAACATAACCTGCCAATTACCAAAAAGAAGGCATTCAAGAAAGTTTCAAAACAGAGGTCAAGGCCAAAGTCTCGAAGTAAAAGAGAGAAAAGAAAAGGAAGGAACAAGAAATAG MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQNDDHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRNKK Homology
BLAST of Lsi01G018360 vs. ExPASy TrEMBL
Match: A0A1S3C1A3 (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 1.3e-74 Identity = 168/202 (83.17%), Postives = 179/202 (88.61%), Query Frame = 0
BLAST of Lsi01G018360 vs. ExPASy TrEMBL
Match: A0A0A0KYB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 2.4e-73 Identity = 168/204 (82.35%), Postives = 181/204 (88.73%), Query Frame = 0
BLAST of Lsi01G018360 vs. ExPASy TrEMBL
Match: A0A6J1CL67 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111012309 PE=3 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 9.1e-73 Identity = 164/202 (81.19%), Postives = 177/202 (87.62%), Query Frame = 0
BLAST of Lsi01G018360 vs. ExPASy TrEMBL
Match: A0A6J1EG67 (ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC111433808 PE=3 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 7.7e-72 Identity = 162/202 (80.20%), Postives = 181/202 (89.60%), Query Frame = 0
BLAST of Lsi01G018360 vs. ExPASy TrEMBL
Match: A0A6J1KRQ7 (ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 PE=3 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 5.0e-71 Identity = 160/202 (79.21%), Postives = 181/202 (89.60%), Query Frame = 0
BLAST of Lsi01G018360 vs. NCBI nr
Match: XP_038881021.1 (nucleolar protein 12 [Benincasa hispida]) HSP 1 Score: 303.1 bits (775), Expect = 1.8e-78 Identity = 173/202 (85.64%), Postives = 187/202 (92.57%), Query Frame = 0
BLAST of Lsi01G018360 vs. NCBI nr
Match: XP_008455785.1 (PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]) HSP 1 Score: 289.3 bits (739), Expect = 2.6e-74 Identity = 168/202 (83.17%), Postives = 179/202 (88.61%), Query Frame = 0
BLAST of Lsi01G018360 vs. NCBI nr
Match: XP_031740787.1 (ribosomal RNA-processing protein 17 isoform X1 [Cucumis sativus] >KGN54640.1 hypothetical protein Csa_011960 [Cucumis sativus]) HSP 1 Score: 285.0 bits (728), Expect = 4.9e-73 Identity = 168/204 (82.35%), Postives = 181/204 (88.73%), Query Frame = 0
BLAST of Lsi01G018360 vs. NCBI nr
Match: XP_022142095.1 (ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 ribosomal RNA-processing protein 17-like [Momordica charantia]) HSP 1 Score: 283.1 bits (723), Expect = 1.9e-72 Identity = 164/202 (81.19%), Postives = 177/202 (87.62%), Query Frame = 0
BLAST of Lsi01G018360 vs. NCBI nr
Match: XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 280.4 bits (716), Expect = 1.2e-71 Identity = 161/202 (79.70%), Postives = 182/202 (90.10%), Query Frame = 0
BLAST of Lsi01G018360 vs. TAIR 10
Match: AT1G11240.1 (CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). ) HSP 1 Score: 144.1 bits (362), Expect = 1.3e-34 Identity = 109/194 (56.19%), Postives = 136/194 (70.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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