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Lsi01G018220 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTATTTCTACTCCCATTCAGTATGGTCTGTACGGCGCCGGTGCCGGCACCGGCAATGGAGTATTAGAAGTTCACTTACGCTATTTCGAACGAACGATCTCTGTTTCCCCGGTCGCCGGAAATCCGCCGCGAATCCTCCATGAAACTCCACCGATTCCATTCCACACTGCACTCTTCTATCTCTCTTTGCTCCAACTTCAAGATCCGTTGTTCCACATTCAGCAATTCCTCTCCTCAATCAACATCCGCCACGTCGCTTGCGAAATCATTACTCGGAAAATCGCGTCGTACATCTTTCAGATGAATAACGGAAAGAGAGAGAGGAATTTCCATATCATCGCGGAGATCGATTTCATCCGGATGATTTGGATGGAGGAACATTCAATCGCCGGACGAGGGAACGACGGCGGCGCACTGGTGGAGGAGACGGTGGTGTTGGATGAAGCTCCGCCGCGGAGGAGAGGAGTGGCGGAAGTTGCGGTGGAGAGGGTGAGGGAATTGAAATCGGAAGAGGAATTGGGAGATTGCAGTATCTGTTTGGATGAAATGAGTTGTGAAAAGAGGAAGGTGATAAGTATCTGGTGCGGGCATGTTTATCATGAATCATGTATCTTCAAGTGGCTCACAAACCATGATTCTTGCCCTTTGTGTAGAAAGCCATTGGTGAATTTTTCTGAGGGTTTGGGATTGTAA ATGTCTATTTCTACTCCCATTCAGTATGGTCTGTACGGCGCCGGTGCCGGCACCGGCAATGGAGTATTAGAAGTTCACTTACGCTATTTCGAACGAACGATCTCTGTTTCCCCGGTCGCCGGAAATCCGCCGCGAATCCTCCATGAAACTCCACCGATTCCATTCCACACTGCACTCTTCTATCTCTCTTTGCTCCAACTTCAAGATCCGTTGTTCCACATTCAGCAATTCCTCTCCTCAATCAACATCCGCCACGTCGCTTGCGAAATCATTACTCGGAAAATCGCGTCGTACATCTTTCAGATGAATAACGGAAAGAGAGAGAGGAATTTCCATATCATCGCGGAGATCGATTTCATCCGGATGATTTGGATGGAGGAACATTCAATCGCCGGACGAGGGAACGACGGCGGCGCACTGGTGGAGGAGACGGTGGTGTTGGATGAAGCTCCGCCGCGGAGGAGAGGAGTGGCGGAAGTTGCGGTGGAGAGGGTGAGGGAATTGAAATCGGAAGAGGAATTGGGAGATTGCAGTATCTGTTTGGATGAAATGAGTTGTGAAAAGAGGAAGGTGATAAGTATCTGGTGCGGGCATGTTTATCATGAATCATGTATCTTCAAGTGGCTCACAAACCATGATTCTTGCCCTTTGTGTAGAAAGCCATTGGTGAATTTTTCTGAGGGTTTGGGATTGTAA ATGTCTATTTCTACTCCCATTCAGTATGGTCTGTACGGCGCCGGTGCCGGCACCGGCAATGGAGTATTAGAAGTTCACTTACGCTATTTCGAACGAACGATCTCTGTTTCCCCGGTCGCCGGAAATCCGCCGCGAATCCTCCATGAAACTCCACCGATTCCATTCCACACTGCACTCTTCTATCTCTCTTTGCTCCAACTTCAAGATCCGTTGTTCCACATTCAGCAATTCCTCTCCTCAATCAACATCCGCCACGTCGCTTGCGAAATCATTACTCGGAAAATCGCGTCGTACATCTTTCAGATGAATAACGGAAAGAGAGAGAGGAATTTCCATATCATCGCGGAGATCGATTTCATCCGGATGATTTGGATGGAGGAACATTCAATCGCCGGACGAGGGAACGACGGCGGCGCACTGGTGGAGGAGACGGTGGTGTTGGATGAAGCTCCGCCGCGGAGGAGAGGAGTGGCGGAAGTTGCGGTGGAGAGGGTGAGGGAATTGAAATCGGAAGAGGAATTGGGAGATTGCAGTATCTGTTTGGATGAAATGAGTTGTGAAAAGAGGAAGGTGATAAGTATCTGGTGCGGGCATGTTTATCATGAATCATGTATCTTCAAGTGGCTCACAAACCATGATTCTTGCCCTTTGTGTAGAAAGCCATTGGTGAATTTTTCTGAGGGTTTGGGATTGTAA MSISTPIQYGLYGAGAGTGNGVLEVHLRYFERTISVSPVAGNPPRILHETPPIPFHTALFYLSLLQLQDPLFHIQQFLSSINIRHVACEIITRKIASYIFQMNNGKRERNFHIIAEIDFIRMIWMEEHSIAGRGNDGGALVEETVVLDEAPPRRRGVAEVAVERVRELKSEEELGDCSICLDEMSCEKRKVISIWCGHVYHESCIFKWLTNHDSCPLCRKPLVNFSEGLGL Homology
BLAST of Lsi01G018220 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 6.6e-08 Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 0
BLAST of Lsi01G018220 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.9e-07 Identity = 28/80 (35.00%), Postives = 50/80 (62.50%), Query Frame = 0
BLAST of Lsi01G018220 vs. ExPASy Swiss-Prot
Match: Q9BV68 (E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=2) HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07 Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 0
BLAST of Lsi01G018220 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.6e-07 Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 0
BLAST of Lsi01G018220 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.6e-07 Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 0
BLAST of Lsi01G018220 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 4.4e-71 Identity = 140/224 (62.50%), Postives = 172/224 (76.79%), Query Frame = 0
BLAST of Lsi01G018220 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 4.4e-71 Identity = 140/224 (62.50%), Postives = 172/224 (76.79%), Query Frame = 0
BLAST of Lsi01G018220 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 4.8e-70 Identity = 138/222 (62.16%), Postives = 169/222 (76.13%), Query Frame = 0
BLAST of Lsi01G018220 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 4.8e-70 Identity = 138/222 (62.16%), Postives = 169/222 (76.13%), Query Frame = 0
BLAST of Lsi01G018220 vs. ExPASy TrEMBL
Match: A0A5A7TLM1 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001430 PE=4 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 3.2e-58 Identity = 132/221 (59.73%), Postives = 160/221 (72.40%), Query Frame = 0
BLAST of Lsi01G018220 vs. NCBI nr
Match: XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]) HSP 1 Score: 330.5 bits (846), Expect = 1.2e-86 Identity = 163/219 (74.43%), Postives = 181/219 (82.65%), Query Frame = 0
BLAST of Lsi01G018220 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 277.7 bits (709), Expect = 9.0e-71 Identity = 140/224 (62.50%), Postives = 172/224 (76.79%), Query Frame = 0
BLAST of Lsi01G018220 vs. NCBI nr
Match: XP_004144954.1 (uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_020356 [Cucumis sativus]) HSP 1 Score: 274.2 bits (700), Expect = 1.0e-69 Identity = 138/222 (62.16%), Postives = 169/222 (76.13%), Query Frame = 0
BLAST of Lsi01G018220 vs. NCBI nr
Match: XP_011659694.1 (E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_020163 [Cucumis sativus]) HSP 1 Score: 274.2 bits (700), Expect = 1.0e-69 Identity = 138/222 (62.16%), Postives = 169/222 (76.13%), Query Frame = 0
BLAST of Lsi01G018220 vs. NCBI nr
Match: XP_016901482.1 (PREDICTED: uncharacterized protein LOC107991269 [Cucumis melo] >KAA0044413.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29540.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 235.0 bits (598), Expect = 6.7e-58 Identity = 132/221 (59.73%), Postives = 160/221 (72.40%), Query Frame = 0
BLAST of Lsi01G018220 vs. TAIR 10
Match: AT2G24480.1 (Zinc finger, C3HC4 type (RING finger) family protein ) HSP 1 Score: 62.0 bits (149), Expect = 7.2e-10 Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0
BLAST of Lsi01G018220 vs. TAIR 10
Match: AT5G37200.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.8e-08 Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 0
BLAST of Lsi01G018220 vs. TAIR 10
Match: AT5G05530.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08 Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 0
BLAST of Lsi01G018220 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein ) HSP 1 Score: 56.2 bits (134), Expect = 4.0e-08 Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 0
BLAST of Lsi01G018220 vs. TAIR 10
Match: AT1G72200.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.8 bits (133), Expect = 5.2e-08 Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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