Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAGCAGAGTTAACCATGGTAACACAAGTCAGTTGCCGCATCCAAACTCTGGAATTCCTCATTATCCACATAATTATTATGCACCACCTCATCCATATTATCAACCTTACGTAAATCATGCAGCAGTCCAATATTATCCCCCTCCTCCTCAAAATCAACGCTCTTATGTGAATCAGGGGTACCAGCCTCAAGGTCAACAAAATTCTTATGCTCGAGGACAAGATAATAATAAAGGGGGTCGTAAACAAGTGCATTTTGATCCGATTCCAATGACTTACACAGAGCTTCTGCCACGACTATTTCAGAATAATCAACTAGCACCTGTACCAATAGAACCACTGCAACCTCCTTATCCAAAGTGGTATGACCCAAATGCCCGTTGTGATTATCATGCAGGAGTCATTGGGCATTCAACTGAGAATTGTACTGCACTTAAGTACAGGGTACAGGCATTGATCAAGGCGGGATGGCTGAATTTTAAGAAAGACAATGGACCTGACGTAAATAATAACCCTCTTCCAAACCACCAAAATCCACAAGTAAATGTTGTAGATGTGGCTGAGGTTGGTTTAAGAGATGTCGTGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAGGGAATTTGCAAGATGATGTCCTCGTTAGCCAATACGATGACAGTTTATTATGTTCATATCATGCTGGGGCAAAAGGTCACTCTATTGACCAGTACCCTTATTTCTCCCAGAAGGTACAAGAATTATTAAATTCTCATTTCCTAACAGTCTCACAGAAGGTAGTTGGAGAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGGTTTCTCTGGAACGAAAGCCATAACAATCTTTTATAAGGAAAAACCCAGTACTACCACTTCCAAACCAAAACCAATTATCATACAGGTTCCATCTCCATTTGAGTATAAAAGTTCAAAAGCAGTACCATGGAATTATGAATATAAGGTACTTGTTGAGTCTGTACCAGTTCCTATAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCAGAAGCTTTATTGAAGTACAATAGCAAGGAAAAAGGGAAAGCCAAGCTTAGTGATGTCATTGATTGTAGGATAGAAGACCCACTGTTGGTGAGAAATTAAGAAGTAAAGGAGCCAGCATCTGAAGATGACATCCAAGAGTTTTTAAAACTTATAAAACAAAGTGATTATAAAGTAATTGAACAGTTGGGCAAAACGCCTGCTAGAATCTCTATTTTGGCCTTATTGTTATCTTCAGACCTGCATCGCAAAACTCTAATGAATATCCTGAACTAGACTTATGTTCCATCAGACAATTTAGACAACATCGTTGGCAGTATAATAGCATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCGGAAGGCATGGGTCACACAAAGGCCTTGCATATTACAGTTAAGTGCAAGAAATTTGCTGTGGCCAAAGTTTTAGTTGACAATGGCTCTTCTTTGAACATACTGCCTATGTCTACATTGGAAAAATTGTCTGTTGATATGTCATACCTCCAATCAAGCACTATGATAGTGAGGGCCTTTGATGGATCGCGCAGTGAAGTGGTTGGGGACATAGAAATCCCTATTCAAATAGGCCCTTGCATCTTTGACATAACTTTCCAAGTCATGAACATCAACTTAGCCTATAGTTTCCTGTTAGGTCGTCCATGGATTCATTCAGCAGGAGTAGTCCCTTCGTCATTGCACCAATGCCTTAAATTTGTAGTCAATCGCAAGCTAGTGATCGTATCAGGACAAGAGGATATTTTTGTGTCAAGCCATCCTCAATGCCATATATAG
mRNA sequence
ATGATAAGCAGAGTTAACCATGGTAACACAAGTCAGTTGCCGCATCCAAACTCTGGAATTCCTCATTATCCACATAATTATTATGCACCACCTCATCCATATTATCAACCTTACGTAAATCATGCAGCAGTCCAATATTATCCCCCTCCTCCTCAAAATCAACGCTCTTATGTGAATCAGGGGTACCAGCCTCAAGATGTGGCTGAGGTTGGTTTAAGAGATGTCGTGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAGGGAATTTGCAAGATGATGTCCTCGTTAGCCAATACGATGACAGTTTATTATGTTCATATCATGCTGGGGCAAAAGGTCACTCTATTGACCAGTACCCTTATTTCTCCCAGAAGGTACAAGAATTATTAAATTCTCATTTCCTAACAGTCTCACAGAAGGTAGTTGGAGAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGGTTCCATCTCCATTTGAGTATAAAAGTTCAAAAGCAGTACCATGGAATTATGAATATAAGGTACTTGTTGAGTCTGTACCAGTTCCTATAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCAGAAGCTTTATTGAAGTACAATAGCAAGGAAAAAGGGAAAGCCAAGCTTAGTGATGTCATTGATTGTAGGATAGAAGACCCACTGTTGACTTATGTTCCATCAGACAATTTAGACAACATCGTTGGCAGTATAATAGCATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCGGAAGGCATGGGTCACACAAAGGCCTTGCATATTACAGTTAAGTGCAAGAAATTTGCTGTGGCCAAAGTTTTAGTTGACAATGGCTCTTCTTTGAACATACTGCCTATGTCTACATTGGAAAAATTGTCTGTTGATATGTCATACCTCCAATCAAGCACTATGATAGTGAGGGCCTTTGATGGATCGCGCAGTGAAGTGGTTGGGGACATAGAAATCCCTATTCAAATAGGCCCTTGCATCTTTGACATAACTTTCCAAGTCATGAACATCAACTTAGCCTATAGTTTCCTGTTAGGTCGTCCATGGATTCATTCAGCAGGAGTAGTCCCTTCGTCATTGCACCAATGCCTTAAATTTGTAGTCAATCGCAAGCTAGTGATCGTATCAGGACAAGAGGATATTTTTGTGTCAAGCCATCCTCAATGCCATATATAG
Coding sequence (CDS)
ATGATAAGCAGAGTTAACCATGGTAACACAAGTCAGTTGCCGCATCCAAACTCTGGAATTCCTCATTATCCACATAATTATTATGCACCACCTCATCCATATTATCAACCTTACGTAAATCATGCAGCAGTCCAATATTATCCCCCTCCTCCTCAAAATCAACGCTCTTATGTGAATCAGGGGTACCAGCCTCAAGATGTGGCTGAGGTTGGTTTAAGAGATGTCGTGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAGGGAATTTGCAAGATGATGTCCTCGTTAGCCAATACGATGACAGTTTATTATGTTCATATCATGCTGGGGCAAAAGGTCACTCTATTGACCAGTACCCTTATTTCTCCCAGAAGGTACAAGAATTATTAAATTCTCATTTCCTAACAGTCTCACAGAAGGTAGTTGGAGAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGGTTCCATCTCCATTTGAGTATAAAAGTTCAAAAGCAGTACCATGGAATTATGAATATAAGGTACTTGTTGAGTCTGTACCAGTTCCTATAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCAGAAGCTTTATTGAAGTACAATAGCAAGGAAAAAGGGAAAGCCAAGCTTAGTGATGTCATTGATTGTAGGATAGAAGACCCACTGTTGACTTATGTTCCATCAGACAATTTAGACAACATCGTTGGCAGTATAATAGCATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCGGAAGGCATGGGTCACACAAAGGCCTTGCATATTACAGTTAAGTGCAAGAAATTTGCTGTGGCCAAAGTTTTAGTTGACAATGGCTCTTCTTTGAACATACTGCCTATGTCTACATTGGAAAAATTGTCTGTTGATATGTCATACCTCCAATCAAGCACTATGATAGTGAGGGCCTTTGATGGATCGCGCAGTGAAGTGGTTGGGGACATAGAAATCCCTATTCAAATAGGCCCTTGCATCTTTGACATAACTTTCCAAGTCATGAACATCAACTTAGCCTATAGTTTCCTGTTAGGTCGTCCATGGATTCATTCAGCAGGAGTAGTCCCTTCGTCATTGCACCAATGCCTTAAATTTGTAGTCAATCGCAAGCTAGTGATCGTATCAGGACAAGAGGATATTTTTGTGTCAAGCCATCCTCAATGCCATATATAG
Protein sequence
MISRVNHGNTSQLPHPNSGIPHYPHNYYAPPHPYYQPYVNHAAVQYYPPPPQNQRSYVNQGYQPQDVAEVGLRDVVRMITSKEELFRILFNNRLIEQGNLQDDVLVSQYDDSLLCSYHAGAKGHSIDQYPYFSQKVQELLNSHFLTVSQKVVGESEREHEIDAAEEFSTGECSKVPSPFEYKSSKAVPWNYEYKVLVESVPVPIDNINEIGGTTRSGKCYTPEALLKYNSKEKGKAKLSDVIDCRIEDPLLTYVPSDNLDNIVGSIIASSSITFTDDEIPPEGMGHTKALHITVKCKKFAVAKVLVDNGSSLNILPMSTLEKLSVDMSYLQSSTMIVRAFDGSRSEVVGDIEIPIQIGPCIFDITFQVMNINLAYSFLLGRPWIHSAGVVPSSLHQCLKFVVNRKLVIVSGQEDIFVSSHPQCHI
Homology
BLAST of Lsi01G018210 vs. ExPASy TrEMBL
Match:
A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)
HSP 1 Score: 345.1 bits (884), Expect = 4.1e-91
Identity = 215/469 (45.84%), Postives = 262/469 (55.86%), Query Frame = 0
Query: 75 VVRMITSKEELFRILFNNRLIEQGNLQDDVLVSQYDDSLLCSYHAGAKGHSIDQYPYFSQ 134
V + T EELF IL + + L ++ YD+SL C +HAGAKGH+++Q F
Sbjct: 392 VADITTPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLTCPFHAGAKGHALEQCNSFRM 451
Query: 135 KVQELLNSHFLTVSQKVVGESEREHEIDAAEEFSTGE----------------------- 194
VQELL+S LTV+ S ++ I+ E+ S E
Sbjct: 452 IVQELLDSKILTVA-----NSHQKKGINVVEDVSVAEGSIAEGSSDALKPKRLTIFYSEK 511
Query: 195 -----CSK------VPSPFEYKSSKAVPWNYEYKVL----VESVPVPIDNINEIGGTTRS 254
CS+ VP+PFEYKSSKAVPW YE KV V S P+P+DNI +GG T +
Sbjct: 512 PDAPNCSRKPITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPPLPVDNITGVGGLTXT 571
Query: 255 GKCYTPEALLKYNSK---------------------EKGKAKL-SDVIDCRIE------- 314
G+CYTP++LLK S+ +KGKAKL DV D +E
Sbjct: 572 GRCYTPDSLLKRVSETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDVHDELVEAIVVKDV 631
Query: 315 -------------------------------------------------DPLLTY----- 374
+ LL
Sbjct: 632 SPKQHVFEEEIQEFLKLVKQSEYKVTEQLGRTPAKISILSLLLSSEAHRNTLLEXLKQAF 691
Query: 375 ----VPSDNLDNIVGSIIASSSITFTDDEIPPEGMGHTKALHITVKCKKFAVAKVLVDNG 419
+ DNL N+VG+I ASSSITFTD+EIPPEG GHTKALHI+VKCK F +AKVLVDNG
Sbjct: 692 VSQDITVDNLSNVVGNITASSSITFTDEEIPPEGTGHTKALHISVKCKNFLIAKVLVDNG 751
BLAST of Lsi01G018210 vs. ExPASy TrEMBL
Match:
A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)
HSP 1 Score: 340.1 bits (871), Expect = 1.3e-89
Identity = 214/459 (46.62%), Postives = 255/459 (55.56%), Query Frame = 0
Query: 75 VVRMITSKEELFRILFNNRLIEQGNLQDDVLVSQYDDSLLCSYHAGAKGHSIDQYPYFSQ 134
V + T ELF IL + I L YD+SL C +H GAKGHS++Q F
Sbjct: 497 VADITTPMXELFEILLGSGYISVEYLCPK--YKGYDESLTCXFHXGAKGHSLEQCNXFRM 556
Query: 135 KVQELLNSHFLT------------VSQKVVGESEREH------EIDAAEEFSTGECSK-- 194
KVQELL+S LT V +V E + I E+ CS+
Sbjct: 557 KVQELLDSKILTXANSHXKKXTNVVEDILVAEGSSDSLKPKPLTIFYREKPDAPSCSRKP 616
Query: 195 ----VPSPFEYKSSKAVPWNYEYKVL----VESVPVPIDNINEIGGTTRSGKCYTPEALL 254
VP PFEYKSSKAVPW YE KV V S +P+DNI +GG TR+G+CYTP++LL
Sbjct: 617 XXITVPXPFEYKSSKAVPWKYECKVTVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLL 676
Query: 255 ---------------------KYNSKEKGKAKLSD-----------VIDCRIEDPL---- 314
K +KGKAKL + V D + P+
Sbjct: 677 KRVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDARDELVEAIVVKDVSPKQPMSEEE 736
Query: 315 ------------------LTYVPS---------------------------------DNL 374
L P+ DNL
Sbjct: 737 TQEFLKLVKQSEYKVIEQLGRTPANISILSLLLSSEAHQNALLEALKQAFVSQDITVDNL 796
Query: 375 DNIVGSIIASSSITFTDDEIPPEGMGHTKALHITVKCKKFAVAKVLVDNGSSLNILPMST 419
N+VG+I ASSSI+FTD+EIPPEG GHTKALHI+VKCK F +AKVLVDNGSSLNI+P ST
Sbjct: 797 SNVVGNITASSSISFTDEEIPPEGTGHTKALHISVKCKNFLIAKVLVDNGSSLNIMPRST 856
BLAST of Lsi01G018210 vs. ExPASy TrEMBL
Match:
A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)
HSP 1 Score: 327.0 bits (837), Expect = 1.2e-85
Identity = 203/473 (42.92%), Postives = 258/473 (54.55%), Query Frame = 0
Query: 49 PPPQNQRSYVNQGYQPQDVAEVGLRDVVRMITSKEELFRILFNNRLIEQGNLQDDVLVSQ 108
P P +Q +N + Q++ V + T ELF IL + + L ++
Sbjct: 434 PLPNHQNVQIN-AIECQEIESKS--KVADIRTPMVELFEILLGSGYVSVEYLCPNLKYKG 493
Query: 109 YDDSLLCSYHAGAKGHSIDQYPYFSQKVQELLNSHFLTVSQK--------VVGESEREHE 168
YD+SL C +HAGAKGHS++Q F KVQELL+S LTV+ V S E
Sbjct: 494 YDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKGINIVEDVSVAEGS 553
Query: 169 IDA----------AEEFSTGECSK------VPSPFEYKSSKAVPWNYEYKVL----VESV 228
DA +E+ + CS+ VP+PFEYKSSKAVPW Y+ KV V S
Sbjct: 554 SDALKPKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSP 613
Query: 229 PVPIDNINEIGGTTRSGKCYTPEALL---------------------KYNSKEKGKAKLS 288
P+PIDNI +GG TR+G+CYTP++LL K +KGKAKL
Sbjct: 614 PLPIDNITGVGGLTRTGRCYTPDSLLKCVNETTSEKNKEKASEKKKEKVEEDKKGKAKLH 673
Query: 289 DVIDCRIEDPLLTY---------------------------------------------- 348
+ + + + ++
Sbjct: 674 EDVHDELVEAIVVKDVSPKQPMSEEETQEILKLVKQSEYKVIEQLGRTPAKISILSLLLS 733
Query: 349 --------------------VPSDNLDNIVGSIIASSSITFTDDEIPPEGMGHTKALHIT 407
+ DNL N+VG+I +SSITFTD+EIPPEG GHTKALHI+
Sbjct: 734 SEAHRNALLEALKQAFVSQDITVDNLSNVVGNISXASSITFTDEEIPPEGTGHTKALHIS 793
BLAST of Lsi01G018210 vs. ExPASy TrEMBL
Match:
A0A6J1D7C7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1)
HSP 1 Score: 309.3 bits (791), Expect = 2.5e-80
Identity = 187/384 (48.70%), Postives = 225/384 (58.59%), Query Frame = 0
Query: 135 KVQELLNSHFLTVSQK------------VVGESEREH------EIDAAEEFSTGECSK-- 194
KVQELL+S LTV+ +V E + I E+ CS+
Sbjct: 2 KVQELLDSKILTVANSHQKKRTNVVEDILVAEGSSDSIKPKRLTIFYREKPDAPSCSRKP 61
Query: 195 ----VPSPFEYKSSKAVPWNYEYKVL----VESVPVPIDNINEIGGTTRSGKCYTPEALL 254
VP+PFEYKSSKAVPW YE KV V S +P+DNI +GG TR+G+CYTP++LL
Sbjct: 62 ITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLL 121
Query: 255 ---------------------KYNSKEKGKAKL-SDVIDCRIEDPLLTY----------- 314
K +KGKAKL DV D +E+ +
Sbjct: 122 KRVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDVHDELVEEETQEFLKLVKQNEYKV 181
Query: 315 ---------------------------------------VPSDNLDNIVGSIIASSSITF 374
+ DNL N+VG+I+ASS ITF
Sbjct: 182 IEQLGRTPAKISILSLLLSSEAHRNALLEALKQAFVSQDITVDNLSNVVGNIMASSCITF 241
Query: 375 TDDEIPPEGMGHTKALHITVKCKKFAVAKVLVDNGSSLNILPMSTLEKLSVDMSYLQSST 419
TD+EIPPEG GHTKALHI+VKCK F +AKVLV NGSSLNI+P STLEKL VDMS+++ ST
Sbjct: 242 TDEEIPPEGTGHTKALHISVKCKNFLIAKVLVGNGSSLNIMPRSTLEKLPVDMSHMRPST 301
BLAST of Lsi01G018210 vs. ExPASy TrEMBL
Match:
A0A5A7T0H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00180 PE=4 SV=1)
HSP 1 Score: 295.0 bits (754), Expect = 4.9e-76
Identity = 180/452 (39.82%), Postives = 246/452 (54.42%), Query Frame = 0
Query: 46 YYPPPPQNQRSYVNQGYQPQDVAEVGLRDVVRMITSKEELFRILFNNRLIEQGNLQDDVL 105
Y P P ++ VN + E +V ++ E LF LF + L ++
Sbjct: 496 YENPLPDHENPKVN---VVDSLVEKCENEVHEIVMPMEALFEGLFEAGYVSHEYLDPNIR 555
Query: 106 VSQYDDSLLCSYHAGAKGHSIDQYPYFSQKVQELLNSHFLTVSQKVVGESEREHE----- 165
YD+S C +H G GH + Q F KVQ+L++S LTV + G+ E ++
Sbjct: 556 YEGYDESRHCIFHRGVAGHVVQQCQKFRSKVQQLMDSKILTV-YRGQGKDEMKYSKICVL 615
Query: 166 IDAAEE-------------------FSTGECS------KVPSPFEYKSSKAVPWNYEYKV 225
+D E ST C+ +VPSPF++K KAVPW Y+ +V
Sbjct: 616 MDEVSEKKDSFLPRPLTVFYQESRNESTSFCNPKKLTIQVPSPFKFKDLKAVPWRYDCQV 675
Query: 226 LVESVPVPIDNINEIGGTTRSGKCYTPEALL---------------KYNSKE-------- 285
+ + +DNI EI G TRSG+CY P+ L K N+KE
Sbjct: 676 ITGPL---VDNITEISGITRSGRCYKPDNLTVPSNGLILEQGRKNEKRNAKEHCKDQDVE 735
Query: 286 --------------------------KGKAKLSDVIDCRIEDPLLTYVPSDNLDNIVGSI 345
K K+ ++D + + + + I+G+I
Sbjct: 736 MPIVAKDIEYKKLVTDEEANEFLKIVKQKSHRKVLLDILNKAHVGHDISVEKFSGIIGNI 795
Query: 346 IASSSITFTDDEIPPEGMGHTKALHITVKCKKFAVAKVLVDNGSSLNILPMSTLEKLSVD 405
+S+SI FTDDEIPPEG+GHTKALHI +KCK + +A+VLVDNGS+LNI+P STL L VD
Sbjct: 796 TSSNSIVFTDDEIPPEGLGHTKALHIQLKCKDYVIARVLVDNGSALNIMPKSTLLMLPVD 855
Query: 406 MSYLQSSTMIVRAFDGSRSEVVGDIEIPIQIGPCIFDITFQVMNINLAYSFLLGRPWIHS 419
MS+++SSTM+V+AFDGSR EV+GDIE+P++IGPCIF+I FQVM I YSFLLGRPWIHS
Sbjct: 856 MSHIKSSTMVVKAFDGSRREVMGDIELPVKIGPCIFNIVFQVMEITPTYSFLLGRPWIHS 915
BLAST of Lsi01G018210 vs. NCBI nr
Match:
XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])
HSP 1 Score: 345.1 bits (884), Expect = 8.5e-91
Identity = 215/469 (45.84%), Postives = 262/469 (55.86%), Query Frame = 0
Query: 75 VVRMITSKEELFRILFNNRLIEQGNLQDDVLVSQYDDSLLCSYHAGAKGHSIDQYPYFSQ 134
V + T EELF IL + + L ++ YD+SL C +HAGAKGH+++Q F
Sbjct: 392 VADITTPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLTCPFHAGAKGHALEQCNSFRM 451
Query: 135 KVQELLNSHFLTVSQKVVGESEREHEIDAAEEFSTGE----------------------- 194
VQELL+S LTV+ S ++ I+ E+ S E
Sbjct: 452 IVQELLDSKILTVA-----NSHQKKGINVVEDVSVAEGSIAEGSSDALKPKRLTIFYSEK 511
Query: 195 -----CSK------VPSPFEYKSSKAVPWNYEYKVL----VESVPVPIDNINEIGGTTRS 254
CS+ VP+PFEYKSSKAVPW YE KV V S P+P+DNI +GG T +
Sbjct: 512 PDAPNCSRKPITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPPLPVDNITGVGGLTXT 571
Query: 255 GKCYTPEALLKYNSK---------------------EKGKAKL-SDVIDCRIE------- 314
G+CYTP++LLK S+ +KGKAKL DV D +E
Sbjct: 572 GRCYTPDSLLKRVSETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDVHDELVEAIVVKDV 631
Query: 315 -------------------------------------------------DPLLTY----- 374
+ LL
Sbjct: 632 SPKQHVFEEEIQEFLKLVKQSEYKVTEQLGRTPAKISILSLLLSSEAHRNTLLEXLKQAF 691
Query: 375 ----VPSDNLDNIVGSIIASSSITFTDDEIPPEGMGHTKALHITVKCKKFAVAKVLVDNG 419
+ DNL N+VG+I ASSSITFTD+EIPPEG GHTKALHI+VKCK F +AKVLVDNG
Sbjct: 692 VSQDITVDNLSNVVGNITASSSITFTDEEIPPEGTGHTKALHISVKCKNFLIAKVLVDNG 751
BLAST of Lsi01G018210 vs. NCBI nr
Match:
XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])
HSP 1 Score: 340.5 bits (872), Expect = 2.1e-89
Identity = 214/459 (46.62%), Postives = 255/459 (55.56%), Query Frame = 0
Query: 75 VVRMITSKEELFRILFNNRLIEQGNLQDDVLVSQYDDSLLCSYHAGAKGHSIDQYPYFSQ 134
V + T ELF IL + I L YD+SL C +H GAKGHS++Q F
Sbjct: 497 VABITTPMXELFEILLGSGYISVEYLCPK--YKGYDESLTCXFHXGAKGHSLEQCNXFRM 556
Query: 135 KVQELLNSHFLT------------VSQKVVGESEREH------EIDAAEEFSTGECSK-- 194
KVQELL+S LT V +V E + I E+ CS+
Sbjct: 557 KVQELLDSKILTXANSHXKKXTNVVEDILVAEGSSDSLKPKPLTIFYREKPDAPSCSRKP 616
Query: 195 ----VPSPFEYKSSKAVPWNYEYKVL----VESVPVPIDNINEIGGTTRSGKCYTPEALL 254
VP PFEYKSSKAVPW YE KV V S +P+DNI +GG TR+G+CYTP++LL
Sbjct: 617 XXITVPXPFEYKSSKAVPWKYECKVTVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLL 676
Query: 255 ---------------------KYNSKEKGKAKLSD-----------VIDCRIEDPL---- 314
K +KGKAKL + V D + P+
Sbjct: 677 KRVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDARDELVEAIVVKDVSPKQPMSEEE 736
Query: 315 ------------------LTYVPS---------------------------------DNL 374
L P+ DNL
Sbjct: 737 TQEFLKLVKQSEYKVIEQLGRTPANISILSLLLSSEAHQNALLEALKQAFVSQDITVDNL 796
Query: 375 DNIVGSIIASSSITFTDDEIPPEGMGHTKALHITVKCKKFAVAKVLVDNGSSLNILPMST 419
N+VG+I ASSSI+FTD+EIPPEG GHTKALHI+VKCK F +AKVLVDNGSSLNI+P ST
Sbjct: 797 SNVVGNITASSSISFTDEEIPPEGTGHTKALHISVKCKNFLIAKVLVDNGSSLNIMPRST 856
BLAST of Lsi01G018210 vs. NCBI nr
Match:
XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])
HSP 1 Score: 327.0 bits (837), Expect = 2.4e-85
Identity = 203/473 (42.92%), Postives = 258/473 (54.55%), Query Frame = 0
Query: 49 PPPQNQRSYVNQGYQPQDVAEVGLRDVVRMITSKEELFRILFNNRLIEQGNLQDDVLVSQ 108
P P +Q +N + Q++ V + T ELF IL + + L ++
Sbjct: 434 PLPNHQNVQIN-AIECQEIESKS--KVADIRTPMVELFEILLGSGYVSVEYLCPNLKYKG 493
Query: 109 YDDSLLCSYHAGAKGHSIDQYPYFSQKVQELLNSHFLTVSQK--------VVGESEREHE 168
YD+SL C +HAGAKGHS++Q F KVQELL+S LTV+ V S E
Sbjct: 494 YDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKGINIVEDVSVAEGS 553
Query: 169 IDA----------AEEFSTGECSK------VPSPFEYKSSKAVPWNYEYKVL----VESV 228
DA +E+ + CS+ VP+PFEYKSSKAVPW Y+ KV V S
Sbjct: 554 SDALKPKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSP 613
Query: 229 PVPIDNINEIGGTTRSGKCYTPEALL---------------------KYNSKEKGKAKLS 288
P+PIDNI +GG TR+G+CYTP++LL K +KGKAKL
Sbjct: 614 PLPIDNITGVGGLTRTGRCYTPDSLLKCVNETTSEKNKEKASEKKKEKVEEDKKGKAKLH 673
Query: 289 DVIDCRIEDPLLTY---------------------------------------------- 348
+ + + + ++
Sbjct: 674 EDVHDELVEAIVVKDVSPKQPMSEEETQEILKLVKQSEYKVIEQLGRTPAKISILSLLLS 733
Query: 349 --------------------VPSDNLDNIVGSIIASSSITFTDDEIPPEGMGHTKALHIT 407
+ DNL N+VG+I +SSITFTD+EIPPEG GHTKALHI+
Sbjct: 734 SEAHRNALLEALKQAFVSQDITVDNLSNVVGNISXASSITFTDEEIPPEGTGHTKALHIS 793
BLAST of Lsi01G018210 vs. NCBI nr
Match:
XP_022150030.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia])
HSP 1 Score: 309.3 bits (791), Expect = 5.1e-80
Identity = 187/384 (48.70%), Postives = 225/384 (58.59%), Query Frame = 0
Query: 135 KVQELLNSHFLTVSQK------------VVGESEREH------EIDAAEEFSTGECSK-- 194
KVQELL+S LTV+ +V E + I E+ CS+
Sbjct: 2 KVQELLDSKILTVANSHQKKRTNVVEDILVAEGSSDSIKPKRLTIFYREKPDAPSCSRKP 61
Query: 195 ----VPSPFEYKSSKAVPWNYEYKVL----VESVPVPIDNINEIGGTTRSGKCYTPEALL 254
VP+PFEYKSSKAVPW YE KV V S +P+DNI +GG TR+G+CYTP++LL
Sbjct: 62 ITITVPAPFEYKSSKAVPWKYECKVTVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLL 121
Query: 255 ---------------------KYNSKEKGKAKL-SDVIDCRIEDPLLTY----------- 314
K +KGKAKL DV D +E+ +
Sbjct: 122 KRVNETTSEKNKEKASEKKKEKVEEDKKGKAKLHEDVHDELVEEETQEFLKLVKQNEYKV 181
Query: 315 ---------------------------------------VPSDNLDNIVGSIIASSSITF 374
+ DNL N+VG+I+ASS ITF
Sbjct: 182 IEQLGRTPAKISILSLLLSSEAHRNALLEALKQAFVSQDITVDNLSNVVGNIMASSCITF 241
Query: 375 TDDEIPPEGMGHTKALHITVKCKKFAVAKVLVDNGSSLNILPMSTLEKLSVDMSYLQSST 419
TD+EIPPEG GHTKALHI+VKCK F +AKVLV NGSSLNI+P STLEKL VDMS+++ ST
Sbjct: 242 TDEEIPPEGTGHTKALHISVKCKNFLIAKVLVGNGSSLNIMPRSTLEKLPVDMSHMRPST 301
BLAST of Lsi01G018210 vs. NCBI nr
Match:
KAA0036942.1 (uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa])
HSP 1 Score: 295.0 bits (754), Expect = 1.0e-75
Identity = 180/452 (39.82%), Postives = 246/452 (54.42%), Query Frame = 0
Query: 46 YYPPPPQNQRSYVNQGYQPQDVAEVGLRDVVRMITSKEELFRILFNNRLIEQGNLQDDVL 105
Y P P ++ VN + E +V ++ E LF LF + L ++
Sbjct: 496 YENPLPDHENPKVN---VVDSLVEKCENEVHEIVMPMEALFEGLFEAGYVSHEYLDPNIR 555
Query: 106 VSQYDDSLLCSYHAGAKGHSIDQYPYFSQKVQELLNSHFLTVSQKVVGESEREHE----- 165
YD+S C +H G GH + Q F KVQ+L++S LTV + G+ E ++
Sbjct: 556 YEGYDESRHCIFHRGVAGHVVQQCQKFRSKVQQLMDSKILTV-YRGQGKDEMKYSKICVL 615
Query: 166 IDAAEE-------------------FSTGECS------KVPSPFEYKSSKAVPWNYEYKV 225
+D E ST C+ +VPSPF++K KAVPW Y+ +V
Sbjct: 616 MDEVSEKKDSFLPRPLTVFYQESRNESTSFCNPKKLTIQVPSPFKFKDLKAVPWRYDCQV 675
Query: 226 LVESVPVPIDNINEIGGTTRSGKCYTPEALL---------------KYNSKE-------- 285
+ + +DNI EI G TRSG+CY P+ L K N+KE
Sbjct: 676 ITGPL---VDNITEISGITRSGRCYKPDNLTVPSNGLILEQGRKNEKRNAKEHCKDQDVE 735
Query: 286 --------------------------KGKAKLSDVIDCRIEDPLLTYVPSDNLDNIVGSI 345
K K+ ++D + + + + I+G+I
Sbjct: 736 MPIVAKDIEYKKLVTDEEANEFLKIVKQKSHRKVLLDILNKAHVGHDISVEKFSGIIGNI 795
Query: 346 IASSSITFTDDEIPPEGMGHTKALHITVKCKKFAVAKVLVDNGSSLNILPMSTLEKLSVD 405
+S+SI FTDDEIPPEG+GHTKALHI +KCK + +A+VLVDNGS+LNI+P STL L VD
Sbjct: 796 TSSNSIVFTDDEIPPEGLGHTKALHIQLKCKDYVIARVLVDNGSALNIMPKSTLLMLPVD 855
Query: 406 MSYLQSSTMIVRAFDGSRSEVVGDIEIPIQIGPCIFDITFQVMNINLAYSFLLGRPWIHS 419
MS+++SSTM+V+AFDGSR EV+GDIE+P++IGPCIF+I FQVM I YSFLLGRPWIHS
Sbjct: 856 MSHIKSSTMVVKAFDGSRREVMGDIELPVKIGPCIFNIVFQVMEITPTYSFLLGRPWIHS 915
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CNY7 | 4.1e-91 | 45.84 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1 | [more] |
A0A6J1D099 | 1.3e-89 | 46.62 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1 | [more] |
A0A6J1E2J7 | 1.2e-85 | 42.92 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1 | [more] |
A0A6J1D7C7 | 2.5e-80 | 48.70 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1 | [more] |
A0A5A7T0H8 | 4.9e-76 | 39.82 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
XP_022143495.1 | 8.5e-91 | 45.84 | LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia] | [more] |
XP_022147189.1 | 2.1e-89 | 46.62 | LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia] | [more] |
XP_022158986.1 | 2.4e-85 | 42.92 | LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia] | [more] |
XP_022150030.1 | 5.1e-80 | 48.70 | LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia] | [more] |
KAA0036942.1 | 1.0e-75 | 39.82 | uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |