Lsi01G018200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G018200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box domain-containing protein
Location	chr01: 18462246 .. 18464118 (-)
RNA-Seq Expression	Lsi01G018200
Synteny	Lsi01G018200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACCTGAGTTCCACGTGTCGCCAATCAAATTTCACCACTCTATAAATAATCACATTAATCGAATCTTCACTAAACCGATCCTTCTCTTTCTTCTTCATGGCACAACCTTTTCCATCTCCTTCCTCACCGCCGCCGCCGTGGGAGGTGCTTCTTCTCGTTGCCGAACGCGTGGACCCCAAAACCCTGGCCACCGCCTCCTGCGTCTGCAAGTCATGGTCCATTGCCATGGCCTCCGACCACCTTTGGGAGCCCATTTTCACGGCCAATTTCCCTTCTCTCTCTAACCTTGCTATCTCCTCCTCCGCCGCCACGTCCCCACCTGTGTCCTTCCGCCGCCTCTTTGGTCTCGGCCACACTGCTGCCGCTCGTCGCCGTCCTGCTCCCTCGAAACCCACTCTTTCCCTCTCCGACCTTGTCTTCGTCGTCAGTATTTCATCCACCGATAAAGATAGGTACATCTTCAGAGACGGAGTGAAGAAAGAAGAAAAAGGTAACTTTAATACGTTTGTACACAATTTCGATGCTCCGTTATGAATTGTGTTTTGATAAATATTTGATTTTTATTTTTGATTTTTAATCTGTCTATTTCCTCTTAATATCACAACATGGTTTTTATTTTCCTAATTGTTAGCTAAATTTCACCAACAAAAAAGTTTTCAAAAAAAAAAAAAAAAAATCGAGGGCCGTTTGGTAATTTTTGGTTTTTTACTTTTAAAAATTAACCCTATATACACCACTTTCATTATAATTTATATGTTTTGTTGTTACTCTACGTTTCTAGGAATATGGTTTGTTGCCTACATTTTAGGAATTAAATTTTGAAAACTACAAAATTTTCAAAATTATTTTAAAATAGGCTAAAATTTCAAACCTTAACAGGGAAAAGCCATAAACCATAAACAAAATTTTCAAAAACATTTTAAGATTGGCTAAAAATTCAACTGTTTATAGGAAAAAATCATAAATCATAAAATTAAGAAACGGAGGGAAAACCAGCACTAATTTCAGAAAACCAAAAACCATTACCAAACAGGCTTTAGTTCTTCAAAAATTGACTTGTTTTTTTTTTAAAACCTTATGGAAAAATATTGGTAGGAAGTAAGGAGCAAAGCAGAAAATTTAGGAAATCAATCCAAAGTTTGTTAAGCTTTTGTTTTTAGTACTTTTTAAAAGTAATGAAAGTGAACTTCTAAGATTTTTTTTTTGTTATAAGGGATTAAAATGGGACTAAATATTCAAGAAAAATTGGATGAAAAAAATATAAATTTTCGAAACATTAAATTATTACATTTTAGAAACTAAAAGTTTACATACAAAGATTAGAAAATTAAACCTTGTAGAAAATGTACTCTAATTTACTCTCGCAAATGGTAGAATTCTAATATATAATTCTTTATTCTACGAAAATTTCCAGCTCCGCCCCAATCCATCCTCACCGTCGTGAAGCACGGCAGGGAGCTAGCCGTGGATCGAAACGGGCTATTCAAATTCGACATAAATCTCGACGACGAAAAGGGCAATGGCGGTCCGGTGGTGATCGGAGCTAGAGAGGAGGTGGAGGTGGTGTGGAACCTAGTGTTAGAAGGGTGGGCGGGGGTGTTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCGAGAGCCGACGGGTGGTTCTCGGAGGAGCTCCCGGCGGCAGGGTGCTGCCCGAACGCCGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGTTGTGTGGAAATGGAAGAGGGAGTAAGGTTAGGATTGAAAGTGTGAGTGTGGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAAAGCAAATGTC

mRNA sequence

ACACCTGAGTTCCACGTGTCGCCAATCAAATTTCACCACTCTATAAATAATCACATTAATCGAATCTTCACTAAACCGATCCTTCTCTTTCTTCTTCATGGCACAACCTTTTCCATCTCCTTCCTCACCGCCGCCGCCTCATGGTCCATTGCCATGGCCTCCGACCACCTTTGGGAGCCCATTTTCACGGCCAATTTCCCTTCTCTCTCTAACCTTGCTATCTCCTCCTCCGCCGCCACGTCCCCACCTGTGTCCTTCCGCCGCCTCTTTGGTCTCGGCCACACTGCTGCCGCTCGTCGCCGTCCTGCTCCCTCGAAACCCACTCTTTCCCTCTCCGACCTTGTCTTCGTCGTCACTCCGCCCCAATCCATCCTCACCGTCGTGAAGCACGGCAGGGAGCTAGCCGTGGATCGAAACGGGCTATTCAAATTCGACATAAATCTCGACGACGAAAAGGGCAATGGCGGTCCGGTGGTGATCGGAGCTAGAGAGGAGGTGGAGGTGGTGTGGAACCTAGTGTTAGAAGGGTGGGCGGGGGTGTTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCGAGAGCCGACGGGTGGTTCTCGGAGGAGCTCCCGGCGGCAGGGTGCTGCCCGAACGCCGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGTTGTGTGGAAATGGAAGAGGGAGTAAGGTTAGGATTGAAAGTGTGAGTGTGGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAAAGCAAATGTC

Coding sequence (CDS)

ACACCTGAGTTCCACGTGTCGCCAATCAAATTTCACCACTCTATAAATAATCACATTAATCGAATCTTCACTAAACCGATCCTTCTCTTTCTTCTTCATGGCACAACCTTTTCCATCTCCTTCCTCACCGCCGCCGCCTCATGGTCCATTGCCATGGCCTCCGACCACCTTTGGGAGCCCATTTTCACGGCCAATTTCCCTTCTCTCTCTAACCTTGCTATCTCCTCCTCCGCCGCCACGTCCCCACCTGTGTCCTTCCGCCGCCTCTTTGGTCTCGGCCACACTGCTGCCGCTCGTCGCCGTCCTGCTCCCTCGAAACCCACTCTTTCCCTCTCCGACCTTGTCTTCGTCGTCACTCCGCCCCAATCCATCCTCACCGTCGTGAAGCACGGCAGGGAGCTAGCCGTGGATCGAAACGGGCTATTCAAATTCGACATAAATCTCGACGACGAAAAGGGCAATGGCGGTCCGGTGGTGATCGGAGCTAGAGAGGAGGTGGAGGTGGTGTGGAACCTAGTGTTAGAAGGGTGGGCGGGGGTGTTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCGAGAGCCGACGGGTGGTTCTCGGAGGAGCTCCCGGCGGCAGGGTGCTGCCCGAACGCCGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGTTGTGTGGAAATGGAAGAGGGAGTAAGGTTAGGATTGAAAGTGTGAGTGTGGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAAAGCAAATGTC

Protein sequence

TPEFHVSPIKFHHSINNHINRIFTKPILLFLLHGTTFSISFLTAAASWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVTPPQSILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLKLGLCGNGRGSKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV

Homology

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BLAST of Lsi01G018200 vs. ExPASy Swiss-Prot
Match: Q5EAF6 (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-12
Identity = 64/227 (28.19%), Postives = 108/227 (47.58%), Query Frame = 0


Query: 45  AASWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRR-PA 104
           + +WS   +S+ LW+ +  A   S+   AI+   A    +S++RL     +AA RRR   
Sbjct: 77  STTWSKCFSSEDLWKSL-PATRHSIFAKAITKEGAKPAWLSYKRLISEAESAAKRRRNNQ 136

Query: 105 PSKPTLSLSDLVFV--VTPPQSILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIG 164
           P++P +SLSDLVF+  V+       VVK G++L    N  F+ + ++ D           
Sbjct: 137 PAEPKISLSDLVFIVHVSAGSKEAVVVKQGKDLVFGSNERFQIEADVRDSG------FTA 196

Query: 165 AREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG--IV 224
             ++V + WN+VL  +  +F M E    +       GWF++ELP      N    G  +V
Sbjct: 197 DMKDVSMSWNVVLRNYERMFLMSET--VIKSLDSMIGWFTDELPGT---KNRYCDGSNLV 256

Query: 225 ADLKLGLCGNGRGSKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFL 267
            ++K         ++  ++ V   +    +W+ + +DD L YLQ FL
Sbjct: 257 GEVKPSF------NEDVLDKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

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BLAST of Lsi01G018200 vs. ExPASy TrEMBL
Match: A0A0A0LDE5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.3e-98
Identity = 193/249 (77.51%), Postives = 206/249 (82.73%), Query Frame = 0


Query: 47  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSK 106
           SWS++MASDHLWEPIFTANFPSL NLA  ++ ATSP VSFRRLFGLG+ AAARRRPA SK
Sbjct: 39  SWSLSMASDHLWEPIFTANFPSLFNLA--TAPATSPHVSFRRLFGLGYIAAARRRPAQSK 98

Query: 107 PTLSLSDLVFVVT-----------------------PPQSILTVVKHGRELAVDRNGLFK 166
           P+LSLSDLVFV++                        PQS LT+VKHG EL VDRNGLFK
Sbjct: 99  PSLSLSDLVFVISISFTNKDRCSIACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFK 158

Query: 167 FDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEE 226
           FDINL +E G+G PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEE
Sbjct: 159 FDINL-NENGDGAPVVIGAREEVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEE 218

Query: 227 LPAAGCCPNAVSGGIVADLKLGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYL 272
           LPAAGCCPN VSGGIV DL+LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYL
Sbjct: 219 LPAAGCCPNVVSGGIVGDLRLGLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYL 278

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BLAST of Lsi01G018200 vs. ExPASy TrEMBL
Match: A0A5D3DEJ6 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00070 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 5.4e-97
Identity = 191/249 (76.71%), Postives = 203/249 (81.53%), Query Frame = 0


Query: 47  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSK 106
           SWS++MASDHLWEPIFTANFPSL NLA  S+  +SPPVSFRRLFGLG+ AAARRRPA  K
Sbjct: 39  SWSLSMASDHLWEPIFTANFPSLFNLA--SAPTSSPPVSFRRLFGLGYIAAARRRPAQLK 98

Query: 107 PTLSLSDLVFVVT-----------------------PPQSILTVVKHGRELAVDRNGLFK 166
           PTLSLSDLVFV++                        PQS LTVVKHG EL V+RNGLFK
Sbjct: 99  PTLSLSDLVFVISISFTDKDQSIIACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFK 158

Query: 167 FDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEE 226
           FDINL++      PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEE
Sbjct: 159 FDINLNE--NGAAPVVIGAREEVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEE 218

Query: 227 LPAAGCCPNAVSGGIVADLKLGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYL 272
           LPAAGCCPNAVSGGIV DL+LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYL
Sbjct: 219 LPAAGCCPNAVSGGIVGDLRLGLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYL 278

[Close]

BLAST of Lsi01G018200 vs. ExPASy TrEMBL
Match: A0A1S3BLJ1 (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 5.4e-97
Identity = 191/249 (76.71%), Postives = 203/249 (81.53%), Query Frame = 0


Query: 47  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSK 106
           SWS++MASDHLWEPIFTANFPSL NLA  S+  +SPPVSFRRLFGLG+ AAARRRPA  K
Sbjct: 39  SWSLSMASDHLWEPIFTANFPSLFNLA--SAPTSSPPVSFRRLFGLGYIAAARRRPAQLK 98

Query: 107 PTLSLSDLVFVVT-----------------------PPQSILTVVKHGRELAVDRNGLFK 166
           PTLSLSDLVFV++                        PQS LTVVKHG EL V+RNGLFK
Sbjct: 99  PTLSLSDLVFVISISFTDKDQSIIACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFK 158

Query: 167 FDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEE 226
           FDINL++      PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEE
Sbjct: 159 FDINLNE--NGAAPVVIGAREEVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEE 218

Query: 227 LPAAGCCPNAVSGGIVADLKLGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYL 272
           LPAAGCCPNAVSGGIV DL+LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYL
Sbjct: 219 LPAAGCCPNAVSGGIVGDLRLGLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYL 278

[Close]

BLAST of Lsi01G018200 vs. ExPASy TrEMBL
Match: A0A6J1EEG3 (probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 6.4e-90
Identity = 183/247 (74.09%), Postives = 197/247 (79.76%), Query Frame = 0


Query: 47  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSK 106
           SWSI+MAS++LWEPIF+A FPSL+NLA +SSA TSPPVSFRRLFGLGHTAAARRRPAPSK
Sbjct: 38  SWSISMASNNLWEPIFSAKFPSLTNLA-ASSATTSPPVSFRRLFGLGHTAAARRRPAPSK 97

Query: 107 PTLSLSDLVFVVT----------------------PPQSILTVVKHGRELAVDRNGLFKF 166
           P LSLSDLVFV++                       P+ + TVVKHG ELAVDRN LFKF
Sbjct: 98  PILSLSDLVFVISVSGTDKANGCIVSGGTKKEEKDVPEPMFTVVKHGGELAVDRNRLFKF 157

Query: 167 DINLDDEKGNGGP-VVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEE 226
           DIN+     NG   VVIGA EEVEVVWN+VLEGW  VFTMIECGGRVGMAPRADGWFSEE
Sbjct: 158 DINV----SNGDEVVVIGAGEEVEVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEE 217

Query: 227 LPAAGCCPNAVSGGIVADLKLGLCGNGRG---SKVRIESVSVGMMSVVSWRYVSLDDGLM 268
           LPAAGCCP  VSGGIVADLKLG+C NG G    KVRIESVSVGMMSV+SWRYVSLDDGLM
Sbjct: 218 LPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLM 277

[Close]

BLAST of Lsi01G018200 vs. ExPASy TrEMBL
Match: A0A6J1HMX9 (probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.7e-88
Identity = 178/246 (72.36%), Postives = 195/246 (79.27%), Query Frame = 0


Query: 47  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSK 106
           SWSI+MAS+HLWEPIF+A FPSL+NLA +SSA  SPP+SF RLFGLGHTAAARRRPAPSK
Sbjct: 38  SWSISMASNHLWEPIFSAKFPSLTNLA-ASSATASPPLSFCRLFGLGHTAAARRRPAPSK 97

Query: 107 PTLSLSDLVFVVT----------------------PPQSILTVVKHGRELAVDRNGLFKF 166
           P LSLSDL+FV++                       P+ + T+VKHG EL VDRNGLFKF
Sbjct: 98  PILSLSDLIFVISVSGTDKADGCIVGGGATKEEKDVPELMFTIVKHGGELVVDRNGLFKF 157

Query: 167 DINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEEL 226
           DIN+   KG+   VVIGA  EVEVVWN+VLEGW  VFTMIECGGRVGMAPRADGWFSEEL
Sbjct: 158 DINV--SKGDEA-VVIGAGGEVEVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEEL 217

Query: 227 PAAGCCPNAVSGGIVADLKLGLCGNGRGSK---VRIESVSVGMMSVVSWRYVSLDDGLMY 268
           PAAGCCP  VSGGIVADLKLG+C NG G K   VRIESVSVGMMSV+SWRYVSLDDGLMY
Sbjct: 218 PAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDEVRIESVSVGMMSVLSWRYVSLDDGLMY 277

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BLAST of Lsi01G018200 vs. NCBI nr
Match: XP_038883618.1 (probable F-box protein At5g04010 [Benincasa hispida])

HSP 1 Score: 398.3 bits (1022), Expect = 5.4e-107
Identity = 206/247 (83.40%), Postives = 213/247 (86.23%), Query Frame = 0


Query: 48  WSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKP 107
           WSI+MASDHLWEPIFTANFPSLSNLAISSSA TSPPVSFRRLFGLGHTAAARRRPAPSKP
Sbjct: 39  WSISMASDHLWEPIFTANFPSLSNLAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKP 98

Query: 108 TLSLSDLVFVVT---------------------PPQSILTVVKHGRELAVDRNGLFKFDI 167
           TLSLSDL+FV++                     PPQSILTVVKHG ELAVDRNGLFKFDI
Sbjct: 99  TLSLSDLIFVISISSTDKDRYIVGHELVEKDKAPPQSILTVVKHGGELAVDRNGLFKFDI 158

Query: 168 NLDDEKGN-GGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELP 227
           NLD + GN GGPVVIG REEVEVVWNLVLEGW GVFTMIECGGRVGMAPRADGWFSEELP
Sbjct: 159 NLDGDNGNKGGPVVIGGREEVEVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELP 218

Query: 228 AAGCCPNAVSGGIVADLKLGLCG-NGRGSKVRIESVSVGMMSVVSWRYVSLDDGLMYLQH 272
           AAGCC N VSGGIVADLKLGL G NG GSKVRIESVSVGMMS+VSWRYVSLDDGLMYLQH
Sbjct: 219 AAGCCSNVVSGGIVADLKLGLRGNNGGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQH 278

[Close]

BLAST of Lsi01G018200 vs. NCBI nr
Match: XP_031740421.1 (probable F-box protein At5g04010 [Cucumis sativus] >KAE8649452.1 hypothetical protein Csa_018886 [Cucumis sativus])

HSP 1 Score: 369.4 bits (947), Expect = 2.7e-98
Identity = 193/249 (77.51%), Postives = 206/249 (82.73%), Query Frame = 0


Query: 47  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSK 106
           SWS++MASDHLWEPIFTANFPSL NLA  ++ ATSP VSFRRLFGLG+ AAARRRPA SK
Sbjct: 39  SWSLSMASDHLWEPIFTANFPSLFNLA--TAPATSPHVSFRRLFGLGYIAAARRRPAQSK 98

Query: 107 PTLSLSDLVFVVT-----------------------PPQSILTVVKHGRELAVDRNGLFK 166
           P+LSLSDLVFV++                        PQS LT+VKHG EL VDRNGLFK
Sbjct: 99  PSLSLSDLVFVISISFTNKDRCSIACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFK 158

Query: 167 FDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEE 226
           FDINL +E G+G PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEE
Sbjct: 159 FDINL-NENGDGAPVVIGAREEVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEE 218

Query: 227 LPAAGCCPNAVSGGIVADLKLGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYL 272
           LPAAGCCPN VSGGIV DL+LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYL
Sbjct: 219 LPAAGCCPNVVSGGIVGDLRLGLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYL 278

[Close]

BLAST of Lsi01G018200 vs. NCBI nr
Match: XP_008449214.1 (PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putative F-box protein [Cucumis melo var. makuwa] >TYK21759.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 364.0 bits (933), Expect = 1.1e-96
Identity = 191/249 (76.71%), Postives = 203/249 (81.53%), Query Frame = 0


Query: 47  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSK 106
           SWS++MASDHLWEPIFTANFPSL NLA  S+  +SPPVSFRRLFGLG+ AAARRRPA  K
Sbjct: 39  SWSLSMASDHLWEPIFTANFPSLFNLA--SAPTSSPPVSFRRLFGLGYIAAARRRPAQLK 98

Query: 107 PTLSLSDLVFVVT-----------------------PPQSILTVVKHGRELAVDRNGLFK 166
           PTLSLSDLVFV++                        PQS LTVVKHG EL V+RNGLFK
Sbjct: 99  PTLSLSDLVFVISISFTDKDQSIIACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFK 158

Query: 167 FDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEE 226
           FDINL++      PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEE
Sbjct: 159 FDINLNE--NGAAPVVIGAREEVEVVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEE 218

Query: 227 LPAAGCCPNAVSGGIVADLKLGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYL 272
           LPAAGCCPNAVSGGIV DL+LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYL
Sbjct: 219 LPAAGCCPNAVSGGIVGDLRLGLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYL 278

[Close]

BLAST of Lsi01G018200 vs. NCBI nr
Match: KAG7027654.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348.6 bits (893), Expect = 4.9e-92
Identity = 182/233 (78.11%), Postives = 198/233 (84.98%), Query Frame = 0


Query: 47  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSK 106
           SWSI+MAS++LWEPIF+A FPSL+NLA +SSA TSPPVSFRRLFGLGHTAAARRRPAPSK
Sbjct: 38  SWSISMASNNLWEPIFSAKFPSLTNLA-ASSATTSPPVSFRRLFGLGHTAAARRRPAPSK 97

Query: 107 PTLSLSDLVFVVT---------PPQSILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGP 166
           P LSLSDLVFV++          P+ + TVVKHG ELAVDRNGLFKFDIN+ +   +   
Sbjct: 98  PILSLSDLVFVISVSGTDKANDVPEPMFTVVKHGSELAVDRNGLFKFDINVSN---SDEV 157

Query: 167 VVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG 226
           VVIGA EEVEVVWN+VLEGW  VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGG
Sbjct: 158 VVIGAGEEVEVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGG 217

Query: 227 IVADLKLGLCGNGRG---SKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF 268
           IVADLKLG+C NG G    KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLF
Sbjct: 218 IVADLKLGVCKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLF 266

[Close]

BLAST of Lsi01G018200 vs. NCBI nr
Match: XP_022925168.1 (probable F-box protein At5g04010 [Cucurbita moschata])

HSP 1 Score: 340.5 bits (872), Expect = 1.3e-89
Identity = 183/247 (74.09%), Postives = 197/247 (79.76%), Query Frame = 0


Query: 47  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSK 106
           SWSI+MAS++LWEPIF+A FPSL+NLA +SSA TSPPVSFRRLFGLGHTAAARRRPAPSK
Sbjct: 38  SWSISMASNNLWEPIFSAKFPSLTNLA-ASSATTSPPVSFRRLFGLGHTAAARRRPAPSK 97

Query: 107 PTLSLSDLVFVVT----------------------PPQSILTVVKHGRELAVDRNGLFKF 166
           P LSLSDLVFV++                       P+ + TVVKHG ELAVDRN LFKF
Sbjct: 98  PILSLSDLVFVISVSGTDKANGCIVSGGTKKEEKDVPEPMFTVVKHGGELAVDRNRLFKF 157

Query: 167 DINLDDEKGNGGP-VVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEE 226
           DIN+     NG   VVIGA EEVEVVWN+VLEGW  VFTMIECGGRVGMAPRADGWFSEE
Sbjct: 158 DINV----SNGDEVVVIGAGEEVEVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEE 217

Query: 227 LPAAGCCPNAVSGGIVADLKLGLCGNGRG---SKVRIESVSVGMMSVVSWRYVSLDDGLM 268
           LPAAGCCP  VSGGIVADLKLG+C NG G    KVRIESVSVGMMSV+SWRYVSLDDGLM
Sbjct: 218 LPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLM 277

[Close]

BLAST of Lsi01G018200 vs. TAIR 10
Match: AT5G04010.1 (F-box family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-14
Identity = 64/227 (28.19%), Postives = 108/227 (47.58%), Query Frame = 0


Query: 45  AASWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRR-PA 104
           + +WS   +S+ LW+ +  A   S+   AI+   A    +S++RL     +AA RRR   
Sbjct: 77  STTWSKCFSSEDLWKSL-PATRHSIFAKAITKEGAKPAWLSYKRLISEAESAAKRRRNNQ 136

Query: 105 PSKPTLSLSDLVFV--VTPPQSILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIG 164
           P++P +SLSDLVF+  V+       VVK G++L    N  F+ + ++ D           
Sbjct: 137 PAEPKISLSDLVFIVHVSAGSKEAVVVKQGKDLVFGSNERFQIEADVRDSG------FTA 196

Query: 165 AREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG--IV 224
             ++V + WN+VL  +  +F M E    +       GWF++ELP      N    G  +V
Sbjct: 197 DMKDVSMSWNVVLRNYERMFLMSET--VIKSLDSMIGWFTDELPGT---KNRYCDGSNLV 256

Query: 225 ADLKLGLCGNGRGSKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFL 267
            ++K         ++  ++ V   +    +W+ + +DD L YLQ FL
Sbjct: 257 GEVKPSF------NEDVLDKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

The following BLAST results are available for this feature:

BLAST of Lsi01G018200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAF6	1.4e-12	28.19	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]

BLAST of Lsi01G018200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDE5	1.3e-98	77.51	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 ...	[more]
A0A5D3DEJ6	5.4e-97	76.71	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BLJ1	5.4e-97	76.71	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
A0A6J1EEG3	6.4e-90	74.09	probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 P...	[more]
A0A6J1HMX9	2.7e-88	72.36	probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=...	[more]

BLAST of Lsi01G018200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883618.1	5.4e-107	83.40	probable F-box protein At5g04010 [Benincasa hispida]	[more]
XP_031740421.1	2.7e-98	77.51	probable F-box protein At5g04010 [Cucumis sativus] >KAE8649452.1 hypothetical pr...	[more]
XP_008449214.1	1.1e-96	76.71	PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putativ...	[more]
KAG7027654.1	4.9e-92	78.11	putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022925168.1	1.3e-89	74.09	probable F-box protein At5g04010 [Cucurbita moschata]	[more]

BLAST of Lsi01G018200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04010.1	9.7e-14	28.19	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12874:SF16	F-BOX PROTEIN	coord: 43..255
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 43..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018200.1	Lsi01G018200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex