Lsi01G017810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G017810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE
Location	chr01: 17092360 .. 17092590 (-)
RNA-Seq Expression	Lsi01G017810
Synteny	Lsi01G017810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCGGTTTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTATTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGTTATCGCCGTCACAGGTTCCGGCGGAGGAGCACCGTGTGGCTGAAGGCGGCGGCGGTCACGATTCGGCTTGA

mRNA sequence

ATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCGGTTTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTATTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGTTATCGCCGTCACAGGTTCCGGCGGAGGAGCACCGTGTGGCTGAAGGCGGCGGCGGTCACGATTCGGCTTGA

Coding sequence (CDS)

ATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCGGTTTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTATTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGTTATCGCCGTCACAGGTTCCGGCGGAGGAGCACCGTGTGGCTGAAGGCGGCGGCGGTCACGATTCGGCTTGA

Protein sequence

MVRAFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVPAEEHRVAEGGGGHDSA

Homology

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BLAST of Lsi01G017810 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVPAEEH 64
           +FS+ S+ +L+ V  SL+ILPLVLPPLPPPP +L+ +PV ++ LLL LA  P+   +   
Sbjct: 99  YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSSS 158

Query: 65  RVAEGGGGHDSA 77
               GGGG + A
Sbjct: 159 AGGGGGGGRNGA 170

[Close]

BLAST of Lsi01G017810 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPLVLPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 71  YFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of Lsi01G017810 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 4   AFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPS 58
           ++FSL S+ +L+ +  SLLILPL+LPPLPPPP +LL IP+ IM LL+ LA  PS
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of Lsi01G017810 vs. ExPASy Swiss-Prot
Match: Q8RWS1 (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 4  AFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVPA 62
          +  + RSVA+L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 23 SLITARSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of Lsi01G017810 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.9e-06
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPLVLPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of Lsi01G017810 vs. ExPASy TrEMBL
Match: A0A0A0L0Y7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MVRAFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVP 60
          MVR FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLF+PVLIMSLLLFLALSPS+VP
Sbjct: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVP 60

Query: 61 AEEHRVAEGGGGHDSA 77
          AEEH   +GG   +SA
Sbjct: 61 AEEHHETDGGDEDNSA 76

[Close]

BLAST of Lsi01G017810 vs. ExPASy TrEMBL
Match: A0A5A7SII5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003090 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 13 MLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVPAEEHRVAEGGGG 72
          MLIV+AVSLLILPLVLPPLPPPPVLLLF+PVLIMSLLLFLALSPS+ PAE HR  +  GG
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDSDGG 60

Query: 73 HDSA 77
          ++SA
Sbjct: 61 YNSA 64

[Close]

BLAST of Lsi01G017810 vs. ExPASy TrEMBL
Match: A0A5D3BWW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00300 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.1e-14
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 13 MLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVPAEEHRVAEGGGG 72
          MLIV+AVSLLILPLVLPPLPPPPVLLLF+PVLIMSLLLFLALSPS+ PAE HR  +  GG
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG 60

Query: 73 HDSA 77
           +SA
Sbjct: 61 FNSA 64

[Close]

BLAST of Lsi01G017810 vs. ExPASy TrEMBL
Match: A0A5B7AL58 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 39/60 (65.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MVRAFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVP 60
           M+  FFSLR+V +++V+ VSLL+LP+VLPPLPPPP++LLFIP+LIM++L+ LA SPSQ+P
Sbjct: 89  MLVRFFSLRAVVIMVVLTVSLLVLPVVLPPLPPPPLMLLFIPILIMAVLILLAFSPSQLP 148

[Close]

BLAST of Lsi01G017810 vs. ExPASy TrEMBL
Match: A0A2N9F7M5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.8e-09
Identity = 37/55 (67.27%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 6  FSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVP 61
          +++R + +++++ VSLL+LPLVLPPLPPPP+LLLF+PVL+MSLL+FLAL+PSQVP
Sbjct: 5  YTVRFITVMLLLTVSLLVLPLVLPPLPPPPLLLLFVPVLMMSLLVFLALTPSQVP 59

[Close]

BLAST of Lsi01G017810 vs. NCBI nr
Match: KAG6603314.1 (hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 8.7e-23
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MVRAFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVP 60
          MVRAFFSLRSVAMLIVVA SLLILPLVLPPLPPPPVLLLF+PVLIM  LLFLALSPS+VP
Sbjct: 1  MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60

Query: 61 AEEHRV-AEGGGGHDSA 77
          AEEHRV A+GGGGHDSA
Sbjct: 61 AEEHRVGADGGGGHDSA 77

[Close]

BLAST of Lsi01G017810 vs. NCBI nr
Match: KAA0025988.1 (hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-14
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 13 MLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVPAEEHRVAEGGGG 72
          MLIV+AVSLLILPLVLPPLPPPPVLLLF+PVLIMSLLLFLALSPS+ PAE HR  +  GG
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDSDGG 60

Query: 73 HDSA 77
          ++SA
Sbjct: 61 YNSA 64

[Close]

BLAST of Lsi01G017810 vs. NCBI nr
Match: TYK04223.1 (hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 13 MLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVPAEEHRVAEGGGG 72
          MLIV+AVSLLILPLVLPPLPPPPVLLLF+PVLIMSLLLFLALSPS+ PAE HR  +  GG
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG 60

Query: 73 HDSA 77
           +SA
Sbjct: 61 FNSA 64

[Close]

BLAST of Lsi01G017810 vs. NCBI nr
Match: KAG2683596.1 (hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothetical protein I3842_10G039100 [Carya illinoinensis] >KAG7958838.1 hypothetical protein I3843_10G039300 [Carya illinoinensis])

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 39/56 (69.64%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 5  FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVP 61
          +FS RS+ ++IV+AVSL+++PL+LPPLPPPP+LLLF+PVLIMSLL+ LALS S VP
Sbjct: 4  YFSARSIVVMIVLAVSLVVVPLLLPPLPPPPLLLLFVPVLIMSLLVVLALSSSHVP 59

[Close]

BLAST of Lsi01G017810 vs. NCBI nr
Match: KAG2687345.1 (hypothetical protein I3760_09G047200 [Carya illinoinensis] >KAG6694413.1 hypothetical protein I3842_09G047400 [Carya illinoinensis] >KAG7962070.1 hypothetical protein I3843_09G047700 [Carya illinoinensis])

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MVRAFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVP 60
          M R + S+ ++ +++V+ VSL++LPLV+PPLPPPP+LLLF+PVLIMSLL+ LALSPSQ P
Sbjct: 1  MFRYYMSVGTIVVMVVLTVSLMVLPLVVPPLPPPPLLLLFVPVLIMSLLVVLALSPSQTP 60

[Close]

BLAST of Lsi01G017810 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 4   AFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPS 58
           ++FSL S+ +L+ +  SLLILPL+LPPLPPPP +LL IP+ IM LL+ LA  PS
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of Lsi01G017810 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 4  AFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPSQVPA 62
          +  + RSVA+L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 23 SLITARSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of Lsi01G017810 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 51.2 bits (121), Expect = 4.2e-07
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFIPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPLVLPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

The following BLAST results are available for this feature:

BLAST of Lsi01G017810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X6L2	1.8e-07	47.22	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
C7SFP6	2.7e-06	60.38	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q8RXL7	2.7e-06	59.26	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]
Q8RWS1	2.7e-06	55.17	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1	[more]
Q6NMD6	5.9e-06	60.38	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Lsi01G017810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Y7	1.5e-20	85.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1	[more]
A0A5A7SII5	1.2e-14	81.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BWW3	6.1e-14	81.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5B7AL58	2.0e-09	65.00	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276...	[more]
A0A2N9F7M5	7.8e-09	67.27	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1	[more]

BLAST of Lsi01G017810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603314.1	8.7e-23	90.91	hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025988.1	2.6e-14	81.25	hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa]	[more]
TYK04223.1	1.3e-13	81.25	hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa]	[more]
KAG2683596.1	2.7e-08	69.64	hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothe...	[more]
KAG2687345.1	3.6e-08	63.33	hypothetical protein I3760_09G047200 [Carya illinoinensis] >KAG6694413.1 hypothe...	[more]

BLAST of Lsi01G017810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44080.1	1.9e-07	59.26	ARGOS-like	[more]
AT2G41230.1	1.9e-07	55.17	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]
AT3G59900.1	4.2e-07	60.38	auxin-regulated gene involved in organ size	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928:SF8	ARGOS7	coord: 1..65
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G017810.1	Lsi01G017810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046622	positive regulation of organ growth
biological_process	GO:0009725	response to hormone
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus