Lsi01G017790 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G017790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	sigma factor binding protein 2, chloroplastic
Location	chr01: 17030559 .. 17031056 (+)
RNA-Seq Expression	Lsi01G017790
Synteny	Lsi01G017790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

mRNA sequence

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Coding sequence (CDS)

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGTTGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCCCCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGTAACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Protein sequence

MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

Homology

[Close]

BLAST of Lsi01G017790 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

[Close]

BLAST of Lsi01G017790 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

[Close]

BLAST of Lsi01G017790 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.8e-58
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.8e-58
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 139

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 140 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 183

[Close]

BLAST of Lsi01G017790 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.3e-57
Identity = 127/167 (76.05%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSK P SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPVAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.8e-56
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53
Identity = 116/164 (70.73%), Postives = 130/164 (79.27%), Query Frame = 0


Query: 3   AGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           AG GTGN+HR+LD VHR KPTKKTKQPNK KPIKVVYISNPMKVQ SAS FMALVQ+LTG
Sbjct: 5   AGTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTG 64

Query: 63  QDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELPEE 122
           QDADFPDPS FP +AV   AA  D +HNT +  +          +MN+NNPSL VE+P E
Sbjct: 65  QDADFPDPSTFPPAAVRDAAAFPD-IHNTTADAN----------LMNNNNPSLTVEIPME 124

Query: 123 DD-FLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           DD FLGSFY+D +DLIFPPPVIGN+  LLPAAA TAV+YESYAR
Sbjct: 125 DDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.4e-67
Identity = 141/165 (85.45%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQEL 60
           M+AGA TGNNHRILDAV+R KPTKKTKQPNKKKPIKVVYISNPMKVQTSAS+FMALVQEL
Sbjct: 1   MNAGADTGNNHRILDAVNRRKPTKKTKQPNKKKPIKVVYISNPMKVQTSASKFMALVQEL 60

Query: 61  TGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVELP 120
           TG+DADFPDPSKF  SAV GGAASSDLLHNTASG   DD+ GASNL+MN+NN SLAVELP
Sbjct: 61  TGRDADFPDPSKFSPSAVCGGAASSDLLHNTASG-GGDDEHGASNLIMNNNNCSLAVELP 120

Query: 121 EEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
            +DD LGSFY+DF+DLIFPPPVIGNFSGLLPAAA  AVVYESYAR
Sbjct: 121 VDDDILGSFYDDFDDLIFPPPVIGNFSGLLPAAA--AVVYESYAR 162

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 139

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 140 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 183

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPMAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 6.9e-57
Identity = 127/167 (76.05%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSK P SAV   AAS+D L+NT SG    DDDGASNL++NSNNPSL  +
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSG--GGDDDGASNLIVNSNNPSLVDD 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLP-GPVAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-55
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNSNNPSLAVE 120
           ELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     +DDGA+NL++NSNN SL  E
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTIS--SGGEDDGATNLIVNSNNSSLVDE 120

Query: 121 LPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR 166
           +P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Sbjct: 121 VPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-APVAAVVYESNAR 164

[Close]

BLAST of Lsi01G017790 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-09
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 17  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFP 76
           V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P
Sbjct: 22  VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

Query: 77  SSAVFGGAASSD-----LLHNTASGRDDDD 100
           SS     +  ++     +LH    G  D D
Sbjct: 82  SSDDHNLSPPAENLAPRVLHQEPFGERDSD 111

[Close]

BLAST of Lsi01G017790 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 9  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFP 68
          N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA   
Sbjct: 11 NQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADL 70

Query: 69 DPSKFPSSAV 79
           PS    +AV
Sbjct: 71 PPSPTTFTAV 80

The following BLAST results are available for this feature:

BLAST of Lsi01G017790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	4.7e-08	47.78	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	1.8e-07	48.57	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lsi01G017790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJV9	8.8e-58	76.65	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3C276	8.8e-58	76.65	sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3BYM2	3.3e-57	76.05	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L3J8	4.8e-56	74.85	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1EY87	3.8e-53	70.73	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of Lsi01G017790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882812.1	7.4e-67	85.45	sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]	[more]
XP_008455708.1	1.8e-57	76.65	PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]	[more]
KAA0025974.1	1.8e-57	76.65	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
TYK04210.1	6.9e-57	76.05	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
KAE8649682.1	1.0e-55	74.85	hypothetical protein Csa_012221 [Cucumis sativus]	[more]

BLAST of Lsi01G017790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	3.4e-09	47.78	sigma factor binding protein 1	[more]
AT2G41180.1	1.3e-08	48.57	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 e-value: 1.0E-12 score: 47.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..111
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..154
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G017790.1	Lsi01G017790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity