Lsi01G017490 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G017490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nascent polypeptide-associated complex, alpha subunit family protein
Location	chr01: 16294503 .. 16295593 (-)
RNA-Seq Expression	Lsi01G017490
Synteny	Lsi01G017490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATATTTGATGACTGAAACATGTTATATGAGTTTGGGATTTCTGGTGGCAGGGCATGGAGAGGCCAGTGGCAGGTCAAAGCAAAGCAGAAGTGAAAAAAAGAGTCGCAAAGCAGTGTTGAAGCTAGGATTGAAGCCAATCCCTGGTGTTAGCCGCGTCACGGTCAAGAAAAGCAAGAATGTTCGTTTTTTTTTTATATCAATGATTTGATTTTCTAAAATATTGCATGATCATCTGTCCTTCACTCAGACATTTATATGATACTAGTGATCATTTCCTCTGCAGATCCTCTTTGTCATTTCAAAACCAGATGTTTTCAAGAGTCCCACTTCGGATACCTACATTGTTTTTGGTGAAGCAAAGATTGAAGATTTGAGCTCTCAGCTACAGACCCAAGCTGCAGAGCAGTTTAAGGCACCTAATTTGAGTAACTTGACATCAAAGCCTGAACCATCAACCATGGCCCAAGATGACGAAGAAGTCGATGAGACCGGGGTTGAACCCAAGGACATTGAACTGGTGATGACTCAAGCTGGTGTATCAAGACCAAAGGCTGTGAAAGCACTCAAAGCAACTGATGGTGATATTGTGTCTGCTATAATGGAACTTACAAATTAATAAGTATGAGGAGGATGTTTTAATAGAGAATGTTGGAATCTTTTTGCCTTGTTTTCCCATATGTTTTACCTGCAGAATTTGAAGTTGAGAGATTGAATGTTTCTTCTGTAAACTTTCCTATTAGTTTTTATATTACATTGTGAGCCAAGCTTGGGGCGGTTCTAATATTATGTGCCTTCTGAGATCATGGTTTTGACGTTATCAGTTTGAGAATTATGTTGATTCTTAGAGATGATGCCTTTTGCCCTGTCATTTTATCTTCCCGCTCCCTGTAAAATCTAGGAAAATTTGTAGAATTTAGTATAGCTACTTAAAAAAAGCGGCTAGTACTCTAGAGGCCGGAATGTTAGGGCCTGTTTGGGGTCCATATTGGAATGAGTTTGGATTGTAAGGTAATTCAAAACCTATGTTTGGATTGAGCATTTTAAGCTTGATTTGTAATATTAAATTCATTTTGATAGTTTCTAACT

mRNA sequence

ATGCTATATTTGATGACTGAAACATGTTATATGAGTTTGGGATTTCTGGTGGCAGGGCATGGAGAGGCCAGTGGCAGGTCAAAGCAAAGCAGAAGTGAAAAAAAGAGTCGCAAAGCAGTGTTGAAGCTAGGATTGAAGCCAATCCCTGGTGTTAGCCGCGTCACGGTCAAGAAAAGCAAGAATATCCTCTTTGTCATTTCAAAACCAGATGTTTTCAAGAGTCCCACTTCGGATACCTACATTGTTTTTGGTGAAGCAAAGATTGAAGATTTGAGCTCTCAGCTACAGACCCAAGCTGCAGAGCAGTTTAAGGCACCTAATTTGAGTAACTTGACATCAAAGCCTGAACCATCAACCATGGCCCAAGATGACGAAGAAGTCGATGAGACCGGGGTTGAACCCAAGGACATTGAACTGGTGATGACTCAAGCTGGTGTATCAAGACCAAAGGCTGTGAAAGCACTCAAAGCAACTGATGGTGATATTGTGTCTGCTATAATGGAACTTACAAATTAATAAGTATGAGGAGGATGTTTTAATAGAGAATGTTGGAATCTTTTTGCCTTGTTTTCCCATATGTTTTACCTGCAGAATTTGAAGTTGAGAGATTGAATGTTTCTTCTGTAAACTTTCCTATTAGTTTTTATATTACATTGTGAGCCAAGCTTGGGGCGGTTCTAATATTATGTGCCTTCTGAGATCATGGTTTTGACGTTATCAGTTTGAGAATTATGTTGATTCTTAGAGATGATGCCTTTTGCCCTGTCATTTTATCTTCCCGCTCCCTGTAAAATCTAGGAAAATTTGTAGAATTTAGTATAGCTACTTAAAAAAAGCGGCTAGTACTCTAGAGGCCGGAATGTTAGGGCCTGTTTGGGGTCCATATTGGAATGAGTTTGGATTGTAAGGTAATTCAAAACCTATGTTTGGATTGAGCATTTTAAGCTTGATTTGTAATATTAAATTCATTTTGATAGTTTCTAACT

Coding sequence (CDS)

ATGCTATATTTGATGACTGAAACATGTTATATGAGTTTGGGATTTCTGGTGGCAGGGCATGGAGAGGCCAGTGGCAGGTCAAAGCAAAGCAGAAGTGAAAAAAAGAGTCGCAAAGCAGTGTTGAAGCTAGGATTGAAGCCAATCCCTGGTGTTAGCCGCGTCACGGTCAAGAAAAGCAAGAATATCCTCTTTGTCATTTCAAAACCAGATGTTTTCAAGAGTCCCACTTCGGATACCTACATTGTTTTTGGTGAAGCAAAGATTGAAGATTTGAGCTCTCAGCTACAGACCCAAGCTGCAGAGCAGTTTAAGGCACCTAATTTGAGTAACTTGACATCAAAGCCTGAACCATCAACCATGGCCCAAGATGACGAAGAAGTCGATGAGACCGGGGTTGAACCCAAGGACATTGAACTGGTGATGACTCAAGCTGGTGTATCAAGACCAAAGGCTGTGAAAGCACTCAAAGCAACTGATGGTGATATTGTGTCTGCTATAATGGAACTTACAAATTAA

Protein sequence

MLYLMTETCYMSLGFLVAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKDIELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN

Homology

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BLAST of Lsi01G017490 vs. ExPASy Swiss-Prot
Match: Q9LHG9 (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.0e-61
Identity = 130/152 (85.53%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 21  GEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTY 80
           GEA G+SKQSRSEKKSRKA+LKLG+KPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY
Sbjct: 51  GEAGGKSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTY 110

Query: 81  IVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMA--QDDEEVDETGVEPKDIE 140
           ++FGEAKIEDLSSQ+Q+QAAEQFKAP+LSN+ SK E S+ A  QDDEEVDE GVEPKDIE
Sbjct: 111 VIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIE 170

Query: 141 LVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           LVMTQAGVSRP AVKALKA DGDIVSAIMELT
Sbjct: 171 LVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202

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BLAST of Lsi01G017490 vs. ExPASy Swiss-Prot
Match: Q9M612 (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda OX=3352 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.5e-61
Identity = 128/153 (83.66%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 19  GHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSD 78
           G     G+SKQSRSEKK RKA+LKLG+KP+ GVSRVT+KKSKNILFVIS PDVFKSPTSD
Sbjct: 52  GEQGGEGKSKQSRSEKKCRKAMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSD 111

Query: 79  TYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDE-EVDETGVEPKDI 138
           TYI FGEAKIEDLSSQLQTQAAEQFKAPNLS++T KPE ST AQ+DE EVD+TGVEPKDI
Sbjct: 112 TYIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKPESSTAAQEDEDEVDDTGVEPKDI 171

Query: 139 ELVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           ELVMTQAGVSR KAVKALKA DGDIVSAIM+LT
Sbjct: 172 ELVMTQAGVSRTKAVKALKAADGDIVSAIMDLT 204

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BLAST of Lsi01G017490 vs. ExPASy Swiss-Prot
Match: Q6ICZ8 (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.2e-60
Identity = 130/160 (81.25%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 19  GH-GEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTS 78
           GH GEA GRSKQSRSEKKSRKA+LKLG+KPI GVSRVTVKKSKNILFVISKPDVFKSP S
Sbjct: 44  GHDGEAGGRSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPAS 103

Query: 79  DTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMA-------QDDEEVDET 138
           DTY++FGEAKIEDLSSQLQ+QAAEQFKAPNLSN+ S+ E S+ A        DDEEVDE 
Sbjct: 104 DTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEE 163

Query: 139 GVEPKDIELVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           GVEPKDIELVMTQAGVS+P+AVKALK  +GDIVSAIMELT
Sbjct: 164 GVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELT 203

[Close]

BLAST of Lsi01G017490 vs. ExPASy Swiss-Prot
Match: Q94JX9 (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-51
Identity = 109/153 (71.24%), Postives = 131/153 (85.62%), Query Frame = 0


Query: 24  SGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVF 83
           SG SKQSRSEKKSRKA+LKLG+KP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++F
Sbjct: 64  SGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIF 123

Query: 84  GEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPST------MAQDDEEVDETGVEPKDI 143
           GEAKIEDLSSQLQTQAA+QF+ P +   + + E ST      + +D+EE+DETGVE +DI
Sbjct: 124 GEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDI 183

Query: 144 ELVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           +LVMTQAGVSR KAVKALK+ DGDIVSAIMELT
Sbjct: 184 DLVMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216

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BLAST of Lsi01G017490 vs. ExPASy Swiss-Prot
Match: Q9SZY1 (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=At4g10480 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-51
Identity = 113/159 (71.07%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 18  AGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTS 77
           AG  EA   SKQSRSEKKSRKA+LKLG+KP+  VSRVT+K+SKN+LFVISKPDVFKSP S
Sbjct: 56  AGENEA---SKQSRSEKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNS 115

Query: 78  DTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNL---TSKPEPSTMAQ---DDEEVDETG 137
           +TY++FGEAKI+D+SSQLQ QAA++FK P+++++   T   E +T+AQ   DDE+VDETG
Sbjct: 116 ETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETG 175

Query: 138 VEPKDIELVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           VE KDI+LVMTQAGVSRPKAVKALK ++GDIVSAIMELT
Sbjct: 176 VEAKDIDLVMTQAGVSRPKAVKALKESNGDIVSAIMELT 211

[Close]

BLAST of Lsi01G017490 vs. ExPASy TrEMBL
Match: A0A5D3CHB5 (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00600 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.5e-72
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 17  VAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 76
           V GHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 46  VEGHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 77  SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKD 136
           SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPST+ QDDEEVDETGVEPKD
Sbjct: 106 SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKD 165

Query: 137 IELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           IELVMTQAGVSRPKAVKALKAT+GDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPKAVKALKATEGDIVSAIMELTN 200

[Close]

BLAST of Lsi01G017490 vs. ExPASy TrEMBL
Match: A0A0A0KYD5 (Nascent polypeptide associated complex alpha OS=Cucumis sativus OX=3659 GN=Csa_4G420110 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.5e-72
Identity = 149/157 (94.90%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 15  FLVAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKS 74
           F VAGHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKS
Sbjct: 40  FFVAGHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKS 99

Query: 75  PTSDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEP 134
           PTSDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPST+AQDDE VDETGVEP
Sbjct: 100 PTSDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVAQDDEVVDETGVEP 159

Query: 135 KDIELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           KDIELVMTQAGVSRP+AVKALKA +GDIVSAIMELTN
Sbjct: 160 KDIELVMTQAGVSRPRAVKALKAAEGDIVSAIMELTN 196

[Close]

BLAST of Lsi01G017490 vs. ExPASy TrEMBL
Match: A0A1S3C1K8 (nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103495854 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.5e-72
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 17  VAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 76
           V GHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 46  VEGHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 77  SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKD 136
           SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPST+ QDDEEVDETGVEPKD
Sbjct: 106 SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKD 165

Query: 137 IELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           IELVMTQAGVSRPKAVKALKAT+GDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPKAVKALKATEGDIVSAIMELTN 200

[Close]

BLAST of Lsi01G017490 vs. ExPASy TrEMBL
Match: A0A6J1DM87 (nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111021750 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.4e-71
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 17  VAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 76
           V GHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 46  VEGHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 77  SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKD 136
           SDTYI+FGEAKIEDLSSQLQ+QAAEQFKAPNLSNLTSKPEPS +AQDDEEVDETGVEPKD
Sbjct: 106 SDTYIIFGEAKIEDLSSQLQSQAAEQFKAPNLSNLTSKPEPSAVAQDDEEVDETGVEPKD 165

Query: 137 IELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           IELVMTQAGVSRP+AVKALKA DGDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPRAVKALKAADGDIVSAIMELTN 200

[Close]

BLAST of Lsi01G017490 vs. ExPASy TrEMBL
Match: A0A6J1DLY9 (nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111021792 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.4e-71
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 17  VAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 76
           V GHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 46  VEGHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 77  SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKD 136
           SDTYI+FGEAKIEDLSSQLQ+QAAEQFKAPNLSNLTSKPEPS +AQDDEEVDETGVEPKD
Sbjct: 106 SDTYIIFGEAKIEDLSSQLQSQAAEQFKAPNLSNLTSKPEPSAVAQDDEEVDETGVEPKD 165

Query: 137 IELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           IELVMTQAGVSRP+AVKALKA DGDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPRAVKALKAADGDIVSAIMELTN 200

[Close]

BLAST of Lsi01G017490 vs. NCBI nr
Match: XP_004144316.2 (nascent polypeptide-associated complex subunit alpha-like protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-71
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 17  VAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 76
           V GHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 46  VEGHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 77  SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKD 136
           SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPST+ QDDEEVDETGVEPKD
Sbjct: 106 SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKD 165

Query: 137 IELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           IELVMTQAGVSRPKAVKALKAT+GDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPKAVKALKATEGDIVSAIMELTN 200

[Close]

BLAST of Lsi01G017490 vs. NCBI nr
Match: XP_008455753.1 (PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Cucumis melo] >KAA0025797.1 nascent polypeptide-associated complex subunit alpha-like protein 1 [Cucumis melo var. makuwa] >TYK09659.1 nascent polypeptide-associated complex subunit alpha-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-71
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 17  VAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 76
           V GHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 46  VEGHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 77  SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKD 136
           SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPST+ QDDEEVDETGVEPKD
Sbjct: 106 SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKD 165

Query: 137 IELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           IELVMTQAGVSRPKAVKALKAT+GDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPKAVKALKATEGDIVSAIMELTN 200

[Close]

BLAST of Lsi01G017490 vs. NCBI nr
Match: XP_022154479.1 (nascent polypeptide-associated complex subunit alpha-like protein 1 [Momordica charantia])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 17  VAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 76
           V GHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 46  VEGHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 77  SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKD 136
           SDTYI+FGEAKIEDLSSQLQ+QAAEQFKAPNLSNLTSKPEPS +AQDDEEVDETGVEPKD
Sbjct: 106 SDTYIIFGEAKIEDLSSQLQSQAAEQFKAPNLSNLTSKPEPSAVAQDDEEVDETGVEPKD 165

Query: 137 IELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           IELVMTQAGVSRP+AVKALKA DGDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPRAVKALKAADGDIVSAIMELTN 200

[Close]

BLAST of Lsi01G017490 vs. NCBI nr
Match: XP_022154547.1 (nascent polypeptide-associated complex subunit alpha-like protein 1 [Momordica charantia])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 17  VAGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 76
           V GHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 46  VEGHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 77  SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKD 136
           SDTYI+FGEAKIEDLSSQLQ+QAAEQFKAPNLSNLTSKPEPS +AQDDEEVDETGVEPKD
Sbjct: 106 SDTYIIFGEAKIEDLSSQLQSQAAEQFKAPNLSNLTSKPEPSAVAQDDEEVDETGVEPKD 165

Query: 137 IELVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           IELVMTQAGVSRP+AVKALKA DGDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPRAVKALKAADGDIVSAIMELTN 200

[Close]

BLAST of Lsi01G017490 vs. NCBI nr
Match: XP_008455754.2 (PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Cucumis melo])

HSP 1 Score: 275.8 bits (704), Expect = 2.5e-70
Identity = 147/153 (96.08%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 19  GHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSD 78
           GHGEASGRSKQSRSEKKSRKA+LKLG+KPIPGVSRVTVKKSKNILFVISKPDVFKSPTSD
Sbjct: 48  GHGEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSD 107

Query: 79  TYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMAQDDEEVDETGVEPKDIE 138
           TYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPST+AQDDE VDETGVEPKDIE
Sbjct: 108 TYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVAQDDEVVDETGVEPKDIE 167

Query: 139 LVMTQAGVSRPKAVKALKATDGDIVSAIMELTN 172
           LVMTQAGVSRP+AVKALKA DGDIVSAIMELTN
Sbjct: 168 LVMTQAGVSRPRAVKALKAADGDIVSAIMELTN 200

[Close]

BLAST of Lsi01G017490 vs. TAIR 10
Match: AT3G12390.1 (Nascent polypeptide-associated complex (NAC), alpha subunit family protein )

HSP 1 Score: 237.7 bits (605), Expect = 7.1e-63
Identity = 130/152 (85.53%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 21  GEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTY 80
           GEA G+SKQSRSEKKSRKA+LKLG+KPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY
Sbjct: 51  GEAGGKSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTY 110

Query: 81  IVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMA--QDDEEVDETGVEPKDIE 140
           ++FGEAKIEDLSSQ+Q+QAAEQFKAP+LSN+ SK E S+ A  QDDEEVDE GVEPKDIE
Sbjct: 111 VIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIE 170

Query: 141 LVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           LVMTQAGVSRP AVKALKA DGDIVSAIMELT
Sbjct: 171 LVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202

[Close]

BLAST of Lsi01G017490 vs. TAIR 10
Match: AT5G13850.1 (nascent polypeptide-associated complex subunit alpha-like protein 3 )

HSP 1 Score: 232.6 bits (592), Expect = 2.3e-61
Identity = 130/160 (81.25%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 19  GH-GEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTS 78
           GH GEA GRSKQSRSEKKSRKA+LKLG+KPI GVSRVTVKKSKNILFVISKPDVFKSP S
Sbjct: 44  GHDGEAGGRSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPAS 103

Query: 79  DTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTMA-------QDDEEVDET 138
           DTY++FGEAKIEDLSSQLQ+QAAEQFKAPNLSN+ S+ E S+ A        DDEEVDE 
Sbjct: 104 DTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEE 163

Query: 139 GVEPKDIELVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           GVEPKDIELVMTQAGVS+P+AVKALK  +GDIVSAIMELT
Sbjct: 164 GVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELT 203

[Close]

BLAST of Lsi01G017490 vs. TAIR 10
Match: AT3G49470.1 (nascent polypeptide-associated complex subunit alpha-like protein 2 )

HSP 1 Score: 204.1 bits (518), Expect = 8.7e-53
Identity = 109/153 (71.24%), Postives = 131/153 (85.62%), Query Frame = 0


Query: 24  SGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVF 83
           SG SKQSRSEKKSRKA+LKLG+KP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++F
Sbjct: 64  SGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIF 123

Query: 84  GEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPST------MAQDDEEVDETGVEPKDI 143
           GEAKIEDLSSQLQTQAA+QF+ P +   + + E ST      + +D+EE+DETGVE +DI
Sbjct: 124 GEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDI 183

Query: 144 ELVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           +LVMTQAGVSR KAVKALK+ DGDIVSAIMELT
Sbjct: 184 DLVMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216

[Close]

BLAST of Lsi01G017490 vs. TAIR 10
Match: AT4G10480.1 (Nascent polypeptide-associated complex (NAC), alpha subunit family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-52
Identity = 113/159 (71.07%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 18  AGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTS 77
           AG  EA   SKQSRSEKKSRKA+LKLG+KP+  VSRVT+K+SKN+LFVISKPDVFKSP S
Sbjct: 56  AGENEA---SKQSRSEKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNS 115

Query: 78  DTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNL---TSKPEPSTMAQ---DDEEVDETG 137
           +TY++FGEAKI+D+SSQLQ QAA++FK P+++++   T   E +T+AQ   DDE+VDETG
Sbjct: 116 ETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETG 175

Query: 138 VEPKDIELVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           VE KDI+LVMTQAGVSRPKAVKALK ++GDIVSAIMELT
Sbjct: 176 VEAKDIDLVMTQAGVSRPKAVKALKESNGDIVSAIMELT 211

[Close]

BLAST of Lsi01G017490 vs. TAIR 10
Match: AT4G10480.2 (Nascent polypeptide-associated complex (NAC), alpha subunit family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-52
Identity = 113/159 (71.07%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 18  AGHGEASGRSKQSRSEKKSRKAVLKLGLKPIPGVSRVTVKKSKNILFVISKPDVFKSPTS 77
           AG  EA   SKQSRSEKKSRKA+LKLG+KP+  VSRVT+K+SKN+LFVISKPDVFKSP S
Sbjct: 55  AGENEA---SKQSRSEKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNS 114

Query: 78  DTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNL---TSKPEPSTMAQ---DDEEVDETG 137
           +TY++FGEAKI+D+SSQLQ QAA++FK P+++++   T   E +T+AQ   DDE+VDETG
Sbjct: 115 ETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETG 174

Query: 138 VEPKDIELVMTQAGVSRPKAVKALKATDGDIVSAIMELT 171
           VE KDI+LVMTQAGVSRPKAVKALK ++GDIVSAIMELT
Sbjct: 175 VEAKDIDLVMTQAGVSRPKAVKALKESNGDIVSAIMELT 210

The following BLAST results are available for this feature:

BLAST of Lsi01G017490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHG9	1.0e-61	85.53	Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidops...	[more]
Q9M612	8.5e-61	83.66	Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda...	[more]
Q6ICZ8	3.2e-60	81.25	Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidops...	[more]
Q94JX9	1.2e-51	71.24	Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidops...	[more]
Q9SZY1	1.6e-51	71.07	Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidops...	[more]

BLAST of Lsi01G017490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHB5	6.5e-72	96.13	Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Cucumis m...	[more]
A0A0A0KYD5	6.5e-72	94.90	Nascent polypeptide associated complex alpha OS=Cucumis sativus OX=3659 GN=Csa_4...	[more]
A0A1S3C1K8	6.5e-72	96.13	nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Cucumis m...	[more]
A0A6J1DM87	9.4e-71	94.19	nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Momordica...	[more]
A0A6J1DLY9	9.4e-71	94.19	nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Momordica...	[more]

BLAST of Lsi01G017490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144316.2	1.3e-71	96.13	nascent polypeptide-associated complex subunit alpha-like protein 1 isoform X2 [...	[more]
XP_008455753.1	1.3e-71	96.13	PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [...	[more]
XP_022154479.1	1.9e-70	94.19	nascent polypeptide-associated complex subunit alpha-like protein 1 [Momordica c...	[more]
XP_022154547.1	1.9e-70	94.19	nascent polypeptide-associated complex subunit alpha-like protein 1 [Momordica c...	[more]
XP_008455754.2	2.5e-70	96.08	PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [...	[more]

BLAST of Lsi01G017490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12390.1	7.1e-63	85.53	Nascent polypeptide-associated complex (NAC), alpha subunit family protein	[more]
AT5G13850.1	2.3e-61	81.25	nascent polypeptide-associated complex subunit alpha-like protein 3	[more]
AT3G49470.1	8.7e-53	71.24	nascent polypeptide-associated complex subunit alpha-like protein 2	[more]
AT4G10480.1	1.1e-52	71.07	Nascent polypeptide-associated complex (NAC), alpha subunit family protein	[more]
AT4G10480.2	1.1e-52	71.07	Nascent polypeptide-associated complex (NAC), alpha subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 33..89 e-value: 3.1E-25 score: 99.8
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 33..88 e-value: 1.6E-21 score: 76.1
IPR002715	Nascent polypeptide-associated complex NAC domain	PROSITE	PS51151	NAC_AB	coord: 30..95 score: 17.778694
IPR016641	Nascent polypeptide-associated complex subunit alpha	PIRSF	PIRSF015901	NAC_alpha	coord: 17..171 e-value: 6.9E-62 score: 206.4
IPR016641	Nascent polypeptide-associated complex subunit alpha	PANTHER	PTHR21713	NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED	coord: 20..171
IPR038187	NAC A/B domain superfamily	GENE3D	2.20.70.30		coord: 44..96 e-value: 4.2E-31 score: 108.1
IPR044034	Nascent polypeptide-associated complex subunit alpha-like, UBA domain	PFAM	PF19026	HYPK_UBA	coord: 131..170 e-value: 1.5E-12 score: 46.7
None	No IPR available	GENE3D	1.10.8.10		coord: 132..169 e-value: 5.0E-20 score: 72.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..130
None	No IPR available	PANTHER	PTHR21713:SF34	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN	coord: 20..171
None	No IPR available	CDD	cd14415	UBA_NACA_NACP1	coord: 125..170 e-value: 2.75837E-20 score: 77.2996

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G017490.1	Lsi01G017490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005854	nascent polypeptide-associated complex