Lsi01G017480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G017480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-type E3 ubiquitin transferase
Location	chr01: 16281669 .. 16282586 (-)
RNA-Seq Expression	Lsi01G017480
Synteny	Lsi01G017480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCTGGTCGGAACACCCATTGGTGTCATAGATGCAGAAGGTCGGTACGTCTTCGTGGTAGAGATGCAGTTTGCCCCAACTGCAATGGAGGATTTATCCAAGAACTTGATGATATGGTGCCTGGAAATCCATTTGATTTCTTTGGTCTGGATCATGATGAAGATCGCGATCATGGTCTAGGAGCATTCTCTGCTTTTATGCGACAACGTTTAGCCGAAAGAAATGATATGAGGGGAAGATCAGAGTCACTTTTTGAGCGTAGCCCTGGGTTTGGTCCTCTATTAATATTTGGTGGTCAAATACCGCTGAGAAACAGCAGGTTAGAAGCTCTCTTCAATGGGGCTCCTGGCATTGGTATTACACGAGGCGATAGTGGCGATTACTTCATAGGCCCTGGATTGGAGGAGCTATTCGAACAGCTTTCTGCAAATGGTCATCGCGGCCCTCCACCAGCATCTAGATCATCAATCGATGCAATGCCAACAGTTAAGATCACGCAACGACATCTTCGCTCAGATTCACATTGTCCAGTTTGTAAAGAAAAATTTGAACTGGGGTCCGAAGCAAGGCAGATGCCGTGTAATCACATGTACCACTCAGATTGTATCATTCCATGGCTGGTCCAGCACAACTCTTGCCCCGTCTGCCGCCAGGAACTGCCACCACAGGGAATAGGAGGCGAAGGTGGAGGCGGGGGTGGGGGACATAGCACCGATGGTCAAAACCGAAGCAACAGCTACAACAACAACAACAGCAATGGCTCCCGGGTCAATCCTGGTAGACGCAATCCATTCTCTTATCTGTGGCCATTTCGATCATCTAGTTCTAGCTCCAACCATGGCGGAGCAGGGAGCAGTGAACCGACGAACCACCAGATGGGGTATTCGGGATATCGATACACAAATTCACCATGA

mRNA sequence

ATGTCAGCTGGTCGGAACACCCATTGGTGTCATAGATGCAGAAGGTCGGTACGTCTTCGTGGTAGAGATGCAGTTTGCCCCAACTGCAATGGAGGATTTATCCAAGAACTTGATGATATGGTGCCTGGAAATCCATTTGATTTCTTTGGTCTGGATCATGATGAAGATCGCGATCATGGTCTAGGAGCATTCTCTGCTTTTATGCGACAACGTTTAGCCGAAAGAAATGATATGAGGGGAAGATCAGAGTCACTTTTTGAGCGTAGCCCTGGGTTTGGTCCTCTATTAATATTTGGTGGTCAAATACCGCTGAGAAACAGCAGGTTAGAAGCTCTCTTCAATGGGGCTCCTGGCATTGGTATTACACGAGGCGATAGTGGCGATTACTTCATAGGCCCTGGATTGGAGGAGCTATTCGAACAGCTTTCTGCAAATGGTCATCGCGGCCCTCCACCAGCATCTAGATCATCAATCGATGCAATGCCAACAGTTAAGATCACGCAACGACATCTTCGCTCAGATTCACATTGTCCAGTTTGTAAAGAAAAATTTGAACTGGGGTCCGAAGCAAGGCAGATGCCGTGTAATCACATGTACCACTCAGATTGTATCATTCCATGGCTGGTCCAGCACAACTCTTGCCCCGTCTGCCGCCAGGAACTGCCACCACAGGGAATAGGAGGCGAAGGTGGAGGCGGGGGTGGGGGACATAGCACCGATGGTCAAAACCGAAGCAACAGCTACAACAACAACAACAGCAATGGCTCCCGGGTCAATCCTGGTAGACGCAATCCATTCTCTTATCTGTGGCCATTTCGATCATCTAGTTCTAGCTCCAACCATGGCGGAGCAGGGAGCAGTGAACCGACGAACCACCAGATGGGGTATTCGGGATATCGATACACAAATTCACCATGA

Coding sequence (CDS)

ATGTCAGCTGGTCGGAACACCCATTGGTGTCATAGATGCAGAAGGTCGGTACGTCTTCGTGGTAGAGATGCAGTTTGCCCCAACTGCAATGGAGGATTTATCCAAGAACTTGATGATATGGTGCCTGGAAATCCATTTGATTTCTTTGGTCTGGATCATGATGAAGATCGCGATCATGGTCTAGGAGCATTCTCTGCTTTTATGCGACAACGTTTAGCCGAAAGAAATGATATGAGGGGAAGATCAGAGTCACTTTTTGAGCGTAGCCCTGGGTTTGGTCCTCTATTAATATTTGGTGGTCAAATACCGCTGAGAAACAGCAGGTTAGAAGCTCTCTTCAATGGGGCTCCTGGCATTGGTATTACACGAGGCGATAGTGGCGATTACTTCATAGGCCCTGGATTGGAGGAGCTATTCGAACAGCTTTCTGCAAATGGTCATCGCGGCCCTCCACCAGCATCTAGATCATCAATCGATGCAATGCCAACAGTTAAGATCACGCAACGACATCTTCGCTCAGATTCACATTGTCCAGTTTGTAAAGAAAAATTTGAACTGGGGTCCGAAGCAAGGCAGATGCCGTGTAATCACATGTACCACTCAGATTGTATCATTCCATGGCTGGTCCAGCACAACTCTTGCCCCGTCTGCCGCCAGGAACTGCCACCACAGGGAATAGGAGGCGAAGGTGGAGGCGGGGGTGGGGGACATAGCACCGATGGTCAAAACCGAAGCAACAGCTACAACAACAACAACAGCAATGGCTCCCGGGTCAATCCTGGTAGACGCAATCCATTCTCTTATCTGTGGCCATTTCGATCATCTAGTTCTAGCTCCAACCATGGCGGAGCAGGGAGCAGTGAACCGACGAACCACCAGATGGGGTATTCGGGATATCGATACACAAATTCACCATGA

Protein sequence

MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHGLGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIGITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGYSGYRYTNSP

Homology

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BLAST of Lsi01G017480 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 2.2e-88
Identity = 184/326 (56.44%), Postives = 226/326 (69.33%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFF----GLDHDED 60
           MS+ RNTHWCHRC+R+VRL G++ VC  C GGF++EL DM   +PFD F    G+   + 
Sbjct: 1   MSSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEEL-DMAQASPFDMFRSHRGVVERDQ 60

Query: 61  RDHGLGAFSAFMRQRLAERN---DMRGRS-ESLFERSPGFGPLLIFGGQIPLR---NSRL 120
               + AFS FMR RLAER+   ++RGR+  S  E  PG  PLLIFGGQ+P R   ++ +
Sbjct: 61  TFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAV 120

Query: 121 EALFN-GAPGIGITRGDSGDYFIGPGLEELFEQLSA-NGHRGPPPASRSSIDAMPTVKIT 180
           EALFN G+PGIGITRG++GDYF GPGLEELFEQLSA    RGPPPA RS+IDA+PT+KI 
Sbjct: 121 EALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIA 180

Query: 181 QRHLR-SDSHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGI 240
           QRHLR SDS+CPVCK++FELGSEA+QMPCNH+YHSDCI+PWLVQHNSCPVCRQELP    
Sbjct: 181 QRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP---- 240

Query: 241 GGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSS----NHG 300
              G       +T  +N  +S ++++SN       RRNPFS  WPFRSS SSS    N G
Sbjct: 241 SASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRG 300

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BLAST of Lsi01G017480 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.5e-79
Identity = 170/312 (54.49%), Postives = 205/312 (65.71%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+ RNTHWCHRC+R+V LR RDAVC  C GGF++E+ D+ P           D +RD  
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAVCSYCGGGFVEEI-DIGPSR------AHRDVERDPT 60

Query: 61  ---LGAFSAFMRQRLAERN---DMRGRSESLFERS-PGFGPLLIFGGQIPLR-----NSR 120
              + AFSAFMR RLAER+   ++ GR  S    S     PLLIFGGQ P R     NS 
Sbjct: 61  FDLMEAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSS 120

Query: 121 LEALFNG-APGIGITRG-DSGDYFIGPGLEELFEQLSA-NGHRGPPPASRSSIDAMPTVK 180
           +EA  NG APGIGI RG ++GDYF GPGLEEL EQLS+   HRGPPPA +SSIDA+PT+K
Sbjct: 121 VEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIK 180

Query: 181 ITQRHLR-SDSHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQ 240
           ITQ+HL+ SDSHCPVCK++FEL SEA+QMPC+H+YHSDCI+PWLVQHNSCPVCR+ELP +
Sbjct: 181 ITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSR 240

Query: 241 GIGGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGA 297
                           G + S   + N S   R N  RRN FS LWPFRSSSSSS     
Sbjct: 241 ----------------GSSSSTQSSQNRSTNGRENSRRRNIFSNLWPFRSSSSSSTQNRR 289

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BLAST of Lsi01G017480 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.2e-34
Identity = 97/281 (34.52%), Postives = 139/281 (49.47%), Query Frame = 0


Query: 9   WCHRCRRSVRLR----GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHGL--- 68
           +C++C R+V +       D  CP CN GF++E D+  P     F   + +    H L   
Sbjct: 24  FCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHDLFLT 83

Query: 69  --GAFSAFMRQRL-AERNDMRGRSESLFERSP--------------GFGPLLIFGGQI-P 128
               F++ +     +  +     S S+   +P               F P       +  
Sbjct: 84  LSDPFASLLPLLFPSSSSTTTSSSASIDPNNPSLSGPTRSGRGDPFAFDPFTFIQNHLND 143

Query: 129 LRNS--RLEALFNGAPGIGITR--GDSGDYFIGPGLEELFEQLSAN--GHRGPPPASRSS 188
           LR+S  ++E +    P     R   + GDYFIGPGLE+L +QL+ N     G PPAS+S+
Sbjct: 144 LRSSGAQIEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSA 203

Query: 189 IDAMPTVKITQRHLRSD-SHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPV 246
           I+A+P V IT+ +L S+ + C VC + FE G+EA+QMPC H+YH DC++PWL  HNSCPV
Sbjct: 204 IEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPV 263

[Close]

BLAST of Lsi01G017480 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.6e-33
Identity = 102/307 (33.22%), Postives = 139/307 (45.28%), Query Frame = 0


Query: 9   WCHRCRRSVRL---RGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDE---------- 68
           +C++C ++V +      D  CP CN GF++E +D  P    +F     D           
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81

Query: 69  ----------DRDHGLGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQI-PL 128
                         G+   S F           + RS     +S  F P       +  L
Sbjct: 82  LLPLIFGSSAAAPSGMDFMSLF-----GPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTL 141

Query: 129 RNS--RLEALFNGAPGIGITR--GDSGDYFIGPGLEELFEQLSAN--GHRGPPPASRSSI 188
           R+S    E +    P     R  G+ GDYF GPGLE+L +QL+ N     G PPAS+S+I
Sbjct: 142 RSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAI 201

Query: 189 DAMPTVKITQRHLRSD-SHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVC 248
           DA+PTVK+T+  L+S+ + C VC ++FE GS+ +QMPC H++H DC++PWL  HNSCPVC
Sbjct: 202 DALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVC 261

Query: 249 RQELPPQGIGGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSS 285
           R ELP      E    G   S DGQ                    R      WPFR    
Sbjct: 262 RFELPTDDPDYENRSQGSQGSGDGQGSVEGQQT-----------PRFSIQLPWPFRRQDG 312

[Close]

BLAST of Lsi01G017480 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.0e-25
Identity = 98/315 (31.11%), Postives = 147/315 (46.67%), Query Frame = 0


Query: 8   HWCHRCRRSVRLRGRDAV-CPNCNGGFIQELDD----------MVPG----NPFDFFGLD 67
           +WCH C +++     D + CP+C GGF++E+ D            PG    NP +  G  
Sbjct: 9   YWCHECEQAIEEAMVDEIKCPSCGGGFVEEMTDEEIERLTNRQPEPGFSQWNPIEHPGET 68

Query: 68  HD-EDRDHGLG-AFSAFMRQ-RLAE--RNDMRGRSESLFERSPGFGPLLI--FGGQIPLR 127
            D +D D+ LG  F  F+R+ R A   R  +    + L +       +LI  F   + L+
Sbjct: 69  MDSDDEDNDLGREFEGFIRRHRRASTLRRVLDSIHDDLADDQERDSSILINAFNQALALQ 128

Query: 128 NSRLEALFNGAPGIGITRGDSG---DYFIGPGLEELFEQLSAN--GHRGPPPASRSSIDA 187
            S L+    G    G +  D G   +Y +G GL  L + L+ +     G PPA + +++A
Sbjct: 129 GSVLDP-DEGQGDQGGSTNDDGLLEEYVLGAGLSLLLQHLAESDPSRNGTPPAKKEAVEA 188

Query: 188 MPTVKITQRHLRSDSHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQE 247
           +PTVKI +        C VC +  E+GS+A+QMPC H +HS CI+PWL  H+SCPVCR E
Sbjct: 189 LPTVKIEE-----VVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFE 248

Query: 248 LPPQGIGGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSN 296
           LP +           G   D      +    N + S   P    P  +L    S+  + N
Sbjct: 249 LPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRPWAIVP--WLNELFSTREAQN 308

[Close]

BLAST of Lsi01G017480 vs. ExPASy TrEMBL
Match: A0A0A0L0T9 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_4G419610 PE=4 SV=1)

HSP 1 Score: 595.5 bits (1534), Expect = 1.2e-166
Identity = 286/305 (93.77%), Postives = 294/305 (96.39%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MSAGRNTHWC+RCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFE SPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFEQLS NGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTD 240
           KEKFELGSEARQM CNHMYHSDCI+PWL+QHNSCPVCRQELPPQGI    GGGGGGHST+
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGI----GGGGGGHSTN 240

Query: 241 GQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGYSGYR 300
            QNRSNSY  NN +GSRVNPGRRNPFSYLWPFRSSSS+SNHGGAGSSEP+NHQMGYSGYR
Sbjct: 241 DQNRSNSY--NNGSGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYR 299

Query: 301 YTNSP 306
           YT+SP
Sbjct: 301 YTSSP 299

[Close]

BLAST of Lsi01G017480 vs. ExPASy TrEMBL
Match: A0A1S3C178 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103495857 PE=4 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 2.6e-164
Identity = 283/305 (92.79%), Postives = 292/305 (95.74%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MSAGRNTHWC+RCRRSVRL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSAGRNTHWCYRCRRSVRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFE SPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFE+LSANGHRGPPPASRSSIDAMPTVKIT RHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFERLSANGHRGPPPASRSSIDAMPTVKITHRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTD 240
           KEKFELGSEARQM CNHMYHSDCI+PWL+QHNSCPVCRQELP QGI    GGGGGGHST+
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPSQGI----GGGGGGHSTN 240

Query: 241 GQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGYSGYR 300
            QNRSNSY  +N +GSRVNPGRRNPFSYLWPFRSSSS+SNHGGAGSSEP+NHQMGYSGYR
Sbjct: 241 DQNRSNSY--SNGSGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYR 299

Query: 301 YTNSP 306
           YTNSP
Sbjct: 301 YTNSP 299

[Close]

BLAST of Lsi01G017480 vs. ExPASy TrEMBL
Match: A0A5A7SIY2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00710 PE=4 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 2.6e-164
Identity = 283/305 (92.79%), Postives = 292/305 (95.74%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MSAGRNTHWC+RCRRSVRL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSAGRNTHWCYRCRRSVRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFE SPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFE+LSANGHRGPPPASRSSIDAMPTVKIT RHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFERLSANGHRGPPPASRSSIDAMPTVKITHRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTD 240
           KEKFELGSEARQM CNHMYHSDCI+PWL+QHNSCPVCRQELP QGI    GGGGGGHST+
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPSQGI----GGGGGGHSTN 240

Query: 241 GQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGYSGYR 300
            QNRSNSY  +N +GSRVNPGRRNPFSYLWPFRSSSS+SNHGGAGSSEP+NHQMGYSGYR
Sbjct: 241 DQNRSNSY--SNGSGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYR 299

Query: 301 YTNSP 306
           YTNSP
Sbjct: 301 YTNSP 299

[Close]

BLAST of Lsi01G017480 vs. ExPASy TrEMBL
Match: A0A6J1DKF0 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111021749 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 4.2e-162
Identity = 280/309 (90.61%), Postives = 292/309 (94.50%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+GRNTHWC+RCRRSV LRGRDAVCPNCNGGFIQELDDMVP NPFDFFGLDHDEDR  G
Sbjct: 1   MSSGRNTHWCYRCRRSVHLRGRDAVCPNCNGGFIQELDDMVPSNPFDFFGLDHDEDRGQG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSES+FERSPGFGPLLIFGGQIPLRNSRLEALF+GAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESVFERSPGFGPLLIFGGQIPLRNSRLEALFSGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFEQLS NG+RGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFEQLSVNGNRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTD 240
           K+KFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGG GGG GGGHST+
Sbjct: 181 KDKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGGGGGAGGGHSTN 240

Query: 241 GQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNH----GGAGSSEPTNHQMGY 300
           GQNRS+S  NNNSNGSRVNPGRRNPFSYLWPFRSS+S SNH    GGAGSSEP NHQM Y
Sbjct: 241 GQNRSSSSYNNNSNGSRVNPGRRNPFSYLWPFRSSNSRSNHSGGGGGAGSSEPMNHQMEY 300

Query: 301 SGYRYTNSP 306
            G+++TNSP
Sbjct: 301 PGWQFTNSP 309

[Close]

BLAST of Lsi01G017480 vs. ExPASy TrEMBL
Match: A0A6J1EAP6 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111432344 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.9e-155
Identity = 265/298 (88.93%), Postives = 278/298 (93.29%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+G+NTHWC+RCRRS+RL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSSGQNTHWCYRCRRSIRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGR+ESLFER+PGFGPLLIFGGQIPLRN RLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRAESLFERNPGFGPLLIFGGQIPLRNRRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGD GDYFIGPGLEELFEQLS NGHRGPPPASRS IDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDGGDYFIGPGLEELFEQLSENGHRGPPPASRSLIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTD 240
           KEKFELGSEARQM CNHMYHSDCI+PWLVQHNSCPVCRQELPPQ +      GG GH+T+
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLVQHNSCPVCRQELPPQVM------GGAGHNTN 240

Query: 241 GQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGYSG 299
            QNR+NSYNNN +  SRVNPGRRNPFSYLWPFRSS+SSSNHGGAGSSE  NHQMGYSG
Sbjct: 241 SQNRNNSYNNNGNGSSRVNPGRRNPFSYLWPFRSSNSSSNHGGAGSSESRNHQMGYSG 292

[Close]

BLAST of Lsi01G017480 vs. NCBI nr
Match: XP_038882645.1 (probable E3 ubiquitin-protein ligase RHC1A [Benincasa hispida] >XP_038882646.1 probable E3 ubiquitin-protein ligase RHC1A [Benincasa hispida] >XP_038882647.1 probable E3 ubiquitin-protein ligase RHC1A [Benincasa hispida] >XP_038882648.1 probable E3 ubiquitin-protein ligase RHC1A [Benincasa hispida] >XP_038882649.1 probable E3 ubiquitin-protein ligase RHC1A [Benincasa hispida] >XP_038882650.1 probable E3 ubiquitin-protein ligase RHC1A [Benincasa hispida])

HSP 1 Score: 600.1 bits (1546), Expect = 1.0e-167
Identity = 289/309 (93.53%), Postives = 295/309 (95.47%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS GRNTHWC+RCRRSVRL GRDAVCP+CNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSTGRNTHWCYRCRRSVRLHGRDAVCPSCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRL ERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLVERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTV ITQRHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVNITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGI----GGEGGGGGGG 240
           KEKFELG EARQMPCNHMYHSDCI+PWLVQHNSCPVCRQELPPQGI    GG GGGGGGG
Sbjct: 181 KEKFELGCEARQMPCNHMYHSDCIVPWLVQHNSCPVCRQELPPQGIGGGGGGGGGGGGGG 240

Query: 241 HSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGY 300
           H+T+GQNRSNSY   N +GSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGY
Sbjct: 241 HNTNGQNRSNSY---NGSGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGY 300

Query: 301 SGYRYTNSP 306
           SGYRYTNSP
Sbjct: 301 SGYRYTNSP 306

[Close]

BLAST of Lsi01G017480 vs. NCBI nr
Match: XP_004144313.1 (probable E3 ubiquitin-protein ligase RHC1A [Cucumis sativus] >XP_004144314.1 probable E3 ubiquitin-protein ligase RHC1A [Cucumis sativus] >XP_011653845.1 probable E3 ubiquitin-protein ligase RHC1A [Cucumis sativus] >XP_031739891.1 probable E3 ubiquitin-protein ligase RHC1A [Cucumis sativus] >KGN54669.1 hypothetical protein Csa_012618 [Cucumis sativus])

HSP 1 Score: 595.5 bits (1534), Expect = 2.6e-166
Identity = 286/305 (93.77%), Postives = 294/305 (96.39%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MSAGRNTHWC+RCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSAGRNTHWCYRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFE SPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFEQLS NGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFEQLSENGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTD 240
           KEKFELGSEARQM CNHMYHSDCI+PWL+QHNSCPVCRQELPPQGI    GGGGGGHST+
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPPQGI----GGGGGGHSTN 240

Query: 241 GQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGYSGYR 300
            QNRSNSY  NN +GSRVNPGRRNPFSYLWPFRSSSS+SNHGGAGSSEP+NHQMGYSGYR
Sbjct: 241 DQNRSNSY--NNGSGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYR 299

Query: 301 YTNSP 306
           YT+SP
Sbjct: 301 YTSSP 299

[Close]

BLAST of Lsi01G017480 vs. NCBI nr
Match: XP_008455755.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >XP_008455756.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >XP_008455757.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >KAA0025786.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK09669.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 587.8 bits (1514), Expect = 5.4e-164
Identity = 283/305 (92.79%), Postives = 292/305 (95.74%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MSAGRNTHWC+RCRRSVRL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSAGRNTHWCYRCRRSVRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFE SPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFEHSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFE+LSANGHRGPPPASRSSIDAMPTVKIT RHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFERLSANGHRGPPPASRSSIDAMPTVKITHRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTD 240
           KEKFELGSEARQM CNHMYHSDCI+PWL+QHNSCPVCRQELP QGI    GGGGGGHST+
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLIQHNSCPVCRQELPSQGI----GGGGGGHSTN 240

Query: 241 GQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGYSGYR 300
            QNRSNSY  +N +GSRVNPGRRNPFSYLWPFRSSSS+SNHGGAGSSEP+NHQMGYSGYR
Sbjct: 241 DQNRSNSY--SNGSGSRVNPGRRNPFSYLWPFRSSSSNSNHGGAGSSEPSNHQMGYSGYR 299

Query: 301 YTNSP 306
           YTNSP
Sbjct: 301 YTNSP 299

[Close]

BLAST of Lsi01G017480 vs. NCBI nr
Match: XP_022154478.1 (probable E3 ubiquitin-protein ligase RHC1A [Momordica charantia])

HSP 1 Score: 580.5 bits (1495), Expect = 8.6e-162
Identity = 280/309 (90.61%), Postives = 292/309 (94.50%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+GRNTHWC+RCRRSV LRGRDAVCPNCNGGFIQELDDMVP NPFDFFGLDHDEDR  G
Sbjct: 1   MSSGRNTHWCYRCRRSVHLRGRDAVCPNCNGGFIQELDDMVPSNPFDFFGLDHDEDRGQG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSES+FERSPGFGPLLIFGGQIPLRNSRLEALF+GAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESVFERSPGFGPLLIFGGQIPLRNSRLEALFSGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGDSGDYFIGPGLEELFEQLS NG+RGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDSGDYFIGPGLEELFEQLSVNGNRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTD 240
           K+KFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGG GGG GGGHST+
Sbjct: 181 KDKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGGGGGAGGGHSTN 240

Query: 241 GQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNH----GGAGSSEPTNHQMGY 300
           GQNRS+S  NNNSNGSRVNPGRRNPFSYLWPFRSS+S SNH    GGAGSSEP NHQM Y
Sbjct: 241 GQNRSSSSYNNNSNGSRVNPGRRNPFSYLWPFRSSNSRSNHSGGGGGAGSSEPMNHQMEY 300

Query: 301 SGYRYTNSP 306
            G+++TNSP
Sbjct: 301 PGWQFTNSP 309

[Close]

BLAST of Lsi01G017480 vs. NCBI nr
Match: XP_023517925.1 (probable E3 ubiquitin-protein ligase RHC1A [Cucurbita pepo subsp. pepo] >XP_023517926.1 probable E3 ubiquitin-protein ligase RHC1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 558.1 bits (1437), Expect = 4.6e-155
Identity = 266/298 (89.26%), Postives = 278/298 (93.29%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+G+NTHWC+RCRRS+RL GRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG
Sbjct: 1   MSSGQNTHWCYRCRRSIRLCGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60

Query: 61  LGAFSAFMRQRLAERNDMRGRSESLFERSPGFGPLLIFGGQIPLRNSRLEALFNGAPGIG 120
           LGAFSAFMRQRLAERNDMRGRSESLFER+PGFGPLLIFGGQIPLRN RLEALFNGAPGIG
Sbjct: 61  LGAFSAFMRQRLAERNDMRGRSESLFERNPGFGPLLIFGGQIPLRNRRLEALFNGAPGIG 120

Query: 121 ITRGDSGDYFIGPGLEELFEQLSANGHRGPPPASRSSIDAMPTVKITQRHLRSDSHCPVC 180
           ITRGD GDYFIGPGLEELFEQLS NGHRGPPPASRS IDAMPTVKITQRHLRSDSHCPVC
Sbjct: 121 ITRGDGGDYFIGPGLEELFEQLSENGHRGPPPASRSLIDAMPTVKITQRHLRSDSHCPVC 180

Query: 181 KEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGIGGEGGGGGGGHSTD 240
           KEKFELGSEARQM CNHMYHSDCI+PWLVQHNSCPVCRQELPPQ +      GGGGH+T+
Sbjct: 181 KEKFELGSEARQMACNHMYHSDCIVPWLVQHNSCPVCRQELPPQVM------GGGGHNTN 240

Query: 241 GQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGAGSSEPTNHQMGYSG 299
            QNR+NSYNNN +  SRVNPGRRNPFSYLWPFRSS+SSSNHGGAGSSE  NH MGYSG
Sbjct: 241 SQNRNNSYNNNGNGSSRVNPGRRNPFSYLWPFRSSNSSSNHGGAGSSESRNHPMGYSG 292

[Close]

BLAST of Lsi01G017480 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 327.0 bits (837), Expect = 1.6e-89
Identity = 184/326 (56.44%), Postives = 226/326 (69.33%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFF----GLDHDED 60
           MS+ RNTHWCHRC+R+VRL G++ VC  C GGF++EL DM   +PFD F    G+   + 
Sbjct: 1   MSSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEEL-DMAQASPFDMFRSHRGVVERDQ 60

Query: 61  RDHGLGAFSAFMRQRLAERN---DMRGRS-ESLFERSPGFGPLLIFGGQIPLR---NSRL 120
               + AFS FMR RLAER+   ++RGR+  S  E  PG  PLLIFGGQ+P R   ++ +
Sbjct: 61  TFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAV 120

Query: 121 EALFN-GAPGIGITRGDSGDYFIGPGLEELFEQLSA-NGHRGPPPASRSSIDAMPTVKIT 180
           EALFN G+PGIGITRG++GDYF GPGLEELFEQLSA    RGPPPA RS+IDA+PT+KI 
Sbjct: 121 EALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIA 180

Query: 181 QRHLR-SDSHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGI 240
           QRHLR SDS+CPVCK++FELGSEA+QMPCNH+YHSDCI+PWLVQHNSCPVCRQELP    
Sbjct: 181 QRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP---- 240

Query: 241 GGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSS----NHG 300
              G       +T  +N  +S ++++SN       RRNPFS  WPFRSS SSS    N G
Sbjct: 241 SASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRG 300

[Close]

BLAST of Lsi01G017480 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 327.0 bits (837), Expect = 1.6e-89
Identity = 184/326 (56.44%), Postives = 226/326 (69.33%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFF----GLDHDED 60
           MS+ RNTHWCHRC+R+VRL G++ VC  C GGF++EL DM   +PFD F    G+   + 
Sbjct: 1   MSSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEEL-DMAQASPFDMFRSHRGVVERDQ 60

Query: 61  RDHGLGAFSAFMRQRLAERN---DMRGRS-ESLFERSPGFGPLLIFGGQIPLR---NSRL 120
               + AFS FMR RLAER+   ++RGR+  S  E  PG  PLLIFGGQ+P R   ++ +
Sbjct: 61  TFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAV 120

Query: 121 EALFN-GAPGIGITRGDSGDYFIGPGLEELFEQLSA-NGHRGPPPASRSSIDAMPTVKIT 180
           EALFN G+PGIGITRG++GDYF GPGLEELFEQLSA    RGPPPA RS+IDA+PT+KI 
Sbjct: 121 EALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIA 180

Query: 181 QRHLR-SDSHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGI 240
           QRHLR SDS+CPVCK++FELGSEA+QMPCNH+YHSDCI+PWLVQHNSCPVCRQELP    
Sbjct: 181 QRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP---- 240

Query: 241 GGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSS----NHG 300
              G       +T  +N  +S ++++SN       RRNPFS  WPFRSS SSS    N G
Sbjct: 241 SASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRG 300

[Close]

BLAST of Lsi01G017480 vs. TAIR 10
Match: AT2G40830.3 (RING-H2 finger C1A )

HSP 1 Score: 327.0 bits (837), Expect = 1.6e-89
Identity = 184/326 (56.44%), Postives = 226/326 (69.33%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFF----GLDHDED 60
           MS+ RNTHWCHRC+R+VRL G++ VC  C GGF++EL DM   +PFD F    G+   + 
Sbjct: 1   MSSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEEL-DMAQASPFDMFRSHRGVVERDQ 60

Query: 61  RDHGLGAFSAFMRQRLAERN---DMRGRS-ESLFERSPGFGPLLIFGGQIPLR---NSRL 120
               + AFS FMR RLAER+   ++RGR+  S  E  PG  PLLIFGGQ+P R   ++ +
Sbjct: 61  TFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAV 120

Query: 121 EALFN-GAPGIGITRGDSGDYFIGPGLEELFEQLSA-NGHRGPPPASRSSIDAMPTVKIT 180
           EALFN G+PGIGITRG++GDYF GPGLEELFEQLSA    RGPPPA RS+IDA+PT+KI 
Sbjct: 121 EALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIA 180

Query: 181 QRHLR-SDSHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQGI 240
           QRHLR SDS+CPVCK++FELGSEA+QMPCNH+YHSDCI+PWLVQHNSCPVCRQELP    
Sbjct: 181 QRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP---- 240

Query: 241 GGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSS----NHG 300
              G       +T  +N  +S ++++SN       RRNPFS  WPFRSS SSS    N G
Sbjct: 241 SASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRG 300

[Close]

BLAST of Lsi01G017480 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein )

HSP 1 Score: 297.0 bits (759), Expect = 1.8e-80
Identity = 170/312 (54.49%), Postives = 205/312 (65.71%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+ RNTHWCHRC+R+V LR RDAVC  C GGF++E+ D+ P           D +RD  
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAVCSYCGGGFVEEI-DIGPSR------AHRDVERDPT 60

Query: 61  ---LGAFSAFMRQRLAERN---DMRGRSESLFERS-PGFGPLLIFGGQIPLR-----NSR 120
              + AFSAFMR RLAER+   ++ GR  S    S     PLLIFGGQ P R     NS 
Sbjct: 61  FDLMEAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSS 120

Query: 121 LEALFNG-APGIGITRG-DSGDYFIGPGLEELFEQLSA-NGHRGPPPASRSSIDAMPTVK 180
           +EA  NG APGIGI RG ++GDYF GPGLEEL EQLS+   HRGPPPA +SSIDA+PT+K
Sbjct: 121 VEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIK 180

Query: 181 ITQRHLR-SDSHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQ 240
           ITQ+HL+ SDSHCPVCK++FEL SEA+QMPC+H+YHSDCI+PWLVQHNSCPVCR+ELP +
Sbjct: 181 ITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSR 240

Query: 241 GIGGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGA 297
                           G + S   + N S   R N  RRN FS LWPFRSSSSSS     
Sbjct: 241 ----------------GSSSSTQSSQNRSTNGRENSRRRNIFSNLWPFRSSSSSSTQNRR 289

[Close]

BLAST of Lsi01G017480 vs. TAIR 10
Match: AT3G56580.1 (RING/U-box superfamily protein )

HSP 1 Score: 297.0 bits (759), Expect = 1.8e-80
Identity = 170/312 (54.49%), Postives = 205/312 (65.71%), Query Frame = 0


Query: 1   MSAGRNTHWCHRCRRSVRLRGRDAVCPNCNGGFIQELDDMVPGNPFDFFGLDHDEDRDHG 60
           MS+ RNTHWCHRC+R+V LR RDAVC  C GGF++E+ D+ P           D +RD  
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAVCSYCGGGFVEEI-DIGPSR------AHRDVERDPT 60

Query: 61  ---LGAFSAFMRQRLAERN---DMRGRSESLFERS-PGFGPLLIFGGQIPLR-----NSR 120
              + AFSAFMR RLAER+   ++ GR  S    S     PLLIFGGQ P R     NS 
Sbjct: 61  FDLMEAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSS 120

Query: 121 LEALFNG-APGIGITRG-DSGDYFIGPGLEELFEQLSA-NGHRGPPPASRSSIDAMPTVK 180
           +EA  NG APGIGI RG ++GDYF GPGLEEL EQLS+   HRGPPPA +SSIDA+PT+K
Sbjct: 121 VEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIK 180

Query: 181 ITQRHLR-SDSHCPVCKEKFELGSEARQMPCNHMYHSDCIIPWLVQHNSCPVCRQELPPQ 240
           ITQ+HL+ SDSHCPVCK++FEL SEA+QMPC+H+YHSDCI+PWLVQHNSCPVCR+ELP +
Sbjct: 181 ITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSR 240

Query: 241 GIGGEGGGGGGGHSTDGQNRSNSYNNNNSNGSRVNPGRRNPFSYLWPFRSSSSSSNHGGA 297
                           G + S   + N S   R N  RRN FS LWPFRSSSSSS     
Sbjct: 241 ----------------GSSSSTQSSQNRSTNGRENSRRRNIFSNLWPFRSSSSSSTQNRR 289

The following BLAST results are available for this feature:

BLAST of Lsi01G017480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22197	2.2e-88	56.44	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q94AK4	2.5e-79	54.49	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
P0CH30	4.2e-34	34.52	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q8LPN7	4.6e-33	33.22	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q6AVN2	6.0e-25	31.11	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]

BLAST of Lsi01G017480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0T9	1.2e-166	93.77	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_4G419610 PE...	[more]
A0A1S3C178	2.6e-164	92.79	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103495857 PE=4 ...	[more]
A0A5A7SIY2	2.6e-164	92.79	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1DKF0	4.2e-162	90.61	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11102174...	[more]
A0A6J1EAP6	4.9e-155	88.93	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111432344...	[more]

BLAST of Lsi01G017480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882645.1	1.0e-167	93.53	probable E3 ubiquitin-protein ligase RHC1A [Benincasa hispida] >XP_038882646.1 p...	[more]
XP_004144313.1	2.6e-166	93.77	probable E3 ubiquitin-protein ligase RHC1A [Cucumis sativus] >XP_004144314.1 pro...	[more]
XP_008455755.1	5.4e-164	92.79	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >XP_008455756.1...	[more]
XP_022154478.1	8.6e-162	90.61	probable E3 ubiquitin-protein ligase RHC1A [Momordica charantia]	[more]
XP_023517925.1	4.6e-155	89.26	probable E3 ubiquitin-protein ligase RHC1A [Cucurbita pepo subsp. pepo] >XP_0235...	[more]

BLAST of Lsi01G017480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40830.2	1.6e-89	56.44	RING-H2 finger C1A	[more]
AT2G40830.1	1.6e-89	56.44	RING-H2 finger C1A	[more]
AT2G40830.3	1.6e-89	56.44	RING-H2 finger C1A	[more]
AT3G56580.2	1.8e-80	54.49	RING/U-box superfamily protein	[more]
AT3G56580.1	1.8e-80	54.49	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 177..217 e-value: 1.1E-7 score: 41.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 176..218 e-value: 4.5E-11 score: 42.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 177..218 score: 12.25323
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 140..224 e-value: 2.1E-22 score: 80.6
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon	PFAM	PF14369	zinc_ribbon_9	coord: 6..37 e-value: 2.7E-12 score: 46.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..305
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 2..291
None	No IPR available	PANTHER	PTHR15710:SF86	E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED	coord: 2..291
None	No IPR available	CDD	cd16667	RING-H2_RNF126_like	coord: 177..218 e-value: 2.82635E-24 score: 90.84
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 157..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G017480.1	Lsi01G017480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0061630	ubiquitin protein ligase activity