Lsi01G016600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G016600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	B3 domain-containing protein
Location	chr01: 15164934 .. 15165791 (-)
RNA-Seq Expression	Lsi01G016600
Synteny	Lsi01G016600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTTGCTACTGCCGCCGGCGAAACAACCGGCGACGACAATGCCCCATCTTCGTACAACGAGTCCGAAAACAGCGAAATGATTGAAGCGGAAGAAGAAGGGGACATCATCAACGTAATCGACGAAGAAACGGCGGCGGAAAGAGGAAGAGGAAAGAAATCGGCGGCGGAGAAGATGAAGATCGTCAACACCGAAACCGATCAAGAAGCAACACGATCTAAAGAAATTGAGATCGGAAAACAAAAGATCGTTTACACGAATGAATCAACGAAATCGGCGTCCTCCTCCGCCGTTATCGTAGAAGAACGAGAATCCTCTGAATCGAGCATAGACGAAAAAACAGAGACAAAAACCTTCCAGAACTTTCCATCGAAATTCCCCTACCGATTCGCGAAACTAATCGAAGATCCGAGCTCGATTCATCCTCGAATTTTGATGGAGAAGCCATTGCGGAGAGGGGACGTGAACAGGAGAAAAGATCGACTGTTGATGAAGGGGAAGAGGATAAAGGAACCGTTCTTGACGGAGGAGGAAATGAAGAAGTTGAAATCCGGCAAGGTTATGAGAGTGGCGGTGATGGAGCCGGACGGCGAAACGGTGAGTTACTTGAGATTGAAAAAGCGGCGGAGCAAAGATAAGGAGGTGGCGTCGTACGCGCTAACCGGAGGGTGGTATAATACGGTGACGCGTCACAGTGACGCGCTGATGAGAGGAGAATTTGTTAGGGTTTGGTATTTTCGCGTGAATGGTAATCTTTGGTTTGGAGTTGAAGATGTTGGAGAAGTGAAGAAAGAATTTGAAATTTTGGAGCTAATGTCTGAGAAATGGTGGCACCAAAATATTTTGGCTCCTTAA

mRNA sequence

ATGGACGTTGCTACTGCCGCCGGCGAAACAACCGGCGACGACAATGCCCCATCTTCGTACAACGAGTCCGAAAACAGCGAAATGATTGAAGCGGAAGAAGAAGGGGACATCATCAACGTAATCGACGAAGAAACGGCGGCGGAAAGAGGAAGAGGAAAGAAATCGGCGGCGGAGAAGATGAAGATCGTCAACACCGAAACCGATCAAGAAGCAACACGATCTAAAGAAATTGAGATCGGAAAACAAAAGATCGTTTACACGAATGAATCAACGAAATCGGCGTCCTCCTCCGCCGTTATCGTAGAAGAACGAGAATCCTCTGAATCGAGCATAGACGAAAAAACAGAGACAAAAACCTTCCAGAACTTTCCATCGAAATTCCCCTACCGATTCGCGAAACTAATCGAAGATCCGAGCTCGATTCATCCTCGAATTTTGATGGAGAAGCCATTGCGGAGAGGGGACGTGAACAGGAGAAAAGATCGACTGTTGATGAAGGGGAAGAGGATAAAGGAACCGTTCTTGACGGAGGAGGAAATGAAGAAGTTGAAATCCGGCAAGGTTATGAGAGTGGCGGTGATGGAGCCGGACGGCGAAACGGTGAGTTACTTGAGATTGAAAAAGCGGCGGAGCAAAGATAAGGAGGTGGCGTCGTACGCGCTAACCGGAGGGTGGTATAATACGGTGACGCGTCACAGTGACGCGCTGATGAGAGGAGAATTTGTTAGGGTTTGGTATTTTCGCGTGAATGGTAATCTTTGGTTTGGAGTTGAAGATGTTGGAGAAGTGAAGAAAGAATTTGAAATTTTGGAGCTAATGTCTGAGAAATGGTGGCACCAAAATATTTTGGCTCCTTAA

Coding sequence (CDS)

ATGGACGTTGCTACTGCCGCCGGCGAAACAACCGGCGACGACAATGCCCCATCTTCGTACAACGAGTCCGAAAACAGCGAAATGATTGAAGCGGAAGAAGAAGGGGACATCATCAACGTAATCGACGAAGAAACGGCGGCGGAAAGAGGAAGAGGAAAGAAATCGGCGGCGGAGAAGATGAAGATCGTCAACACCGAAACCGATCAAGAAGCAACACGATCTAAAGAAATTGAGATCGGAAAACAAAAGATCGTTTACACGAATGAATCAACGAAATCGGCGTCCTCCTCCGCCGTTATCGTAGAAGAACGAGAATCCTCTGAATCGAGCATAGACGAAAAAACAGAGACAAAAACCTTCCAGAACTTTCCATCGAAATTCCCCTACCGATTCGCGAAACTAATCGAAGATCCGAGCTCGATTCATCCTCGAATTTTGATGGAGAAGCCATTGCGGAGAGGGGACGTGAACAGGAGAAAAGATCGACTGTTGATGAAGGGGAAGAGGATAAAGGAACCGTTCTTGACGGAGGAGGAAATGAAGAAGTTGAAATCCGGCAAGGTTATGAGAGTGGCGGTGATGGAGCCGGACGGCGAAACGGTGAGTTACTTGAGATTGAAAAAGCGGCGGAGCAAAGATAAGGAGGTGGCGTCGTACGCGCTAACCGGAGGGTGGTATAATACGGTGACGCGTCACAGTGACGCGCTGATGAGAGGAGAATTTGTTAGGGTTTGGTATTTTCGCGTGAATGGTAATCTTTGGTTTGGAGTTGAAGATGTTGGAGAAGTGAAGAAAGAATTTGAAATTTTGGAGCTAATGTCTGAGAAATGGTGGCACCAAAATATTTTGGCTCCTTAA

Protein sequence

MDVATAAGETTGDDNAPSSYNESENSEMIEAEEEGDIINVIDEETAAERGRGKKSAAEKMKIVNTETDQEATRSKEIEIGKQKIVYTNESTKSASSSAVIVEERESSESSIDEKTETKTFQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHSDALMRGEFVRVWYFRVNGNLWFGVEDVGEVKKEFEILELMSEKWWHQNILAP

Homology

[Close]

BLAST of Lsi01G016600 vs. ExPASy TrEMBL
Match: A0A6J1DRC9 (VID27-like protein OS=Momordica charantia OX=3673 GN=LOC111023136 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.1e-34
Identity = 113/296 (38.18%), Postives = 165/296 (55.74%), Query Frame = 0


Query: 8   GETTGD---DNAPSSYNESEN-SEMIEAEEEGDIINVIDEETAAERGRGKKSAAEKMKIV 67
           GETT D   D+ P +Y+ +E+ +  +  EE  +  +  +EE     G G     E  ++ 
Sbjct: 11  GETTDDESRDDNPPTYSPAESVNGALRREENDEEDDGEEEENGDGDGDGDDELDEDEEVD 70

Query: 68  NTETDQEATRSKEIEIGKQKIVYTNESTKS-------ASSSAVIVEERESSESSIDE-KT 127
               DQE T    +EI ++K V   E+T+S       AS++A    +++SSES  +E +T
Sbjct: 71  IMTVDQEIT-DAAMEIEEEKDVSMEETTQSESSFSAAASAAAFAAVDQDSSESDGEESET 130

Query: 128 ETKTFQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFL 187
           E++   NFP  FP  F K + DP SI PRILMEK LR  DV+  ++RL +  K++KE FL
Sbjct: 131 ESQISHNFPPNFPLEFTKRLVDPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFL 190

Query: 188 TEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHSDA 247
             +E  ++ +G+ M V V+EPD  TVS + L++RR  + +  SY LTG W   V R+SDA
Sbjct: 191 LLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSYVLTGQWSQVVARNSDA 250

Query: 248 LMRGEFVRVWYFR-----VNGNLWFGVEDVGEVK-KEFEILELMSEKWWHQNILAP 286
           L RG  VRVWYF      V   L F +E     K  + E ++ +++KWW QNI  P
Sbjct: 251 LKRGRRVRVWYFHDGDGDVGLRLCFAIEVFESGKGGDGEFVKELTQKWWGQNIFTP 305

[Close]

BLAST of Lsi01G016600 vs. ExPASy TrEMBL
Match: A0A059AMI0 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00861 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 46/142 (32.39%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 120 FQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEE 179
           F   P + P R+ + I++       +++EK L   D++R + RL +  K+I++ FL+EEE
Sbjct: 94  FPRNPRELPRRYMEKIQEMQGRDMTLVVEKTLTATDMSRGQSRLSIPNKQIRQGFLSEEE 153

Query: 180 MKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHS-DALMR 239
           ++ L   + ++V+++EP  E VS L+LK+   + K + SY LT  W      +  + LM+
Sbjct: 154 IRMLDRKEGIKVSLIEPCLE-VSQLQLKRWNYQSK-IFSYVLTERWNGVAHPYERNELMK 213

Query: 240 GEFVRVWYFRVNGNLWFGVEDV 261
              +++W FRV+G+LWF ++ V
Sbjct: 214 DVVIQLWSFRVDGSLWFCLKRV 233

[Close]

BLAST of Lsi01G016600 vs. ExPASy TrEMBL
Match: A0A059AN92 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00811 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 44/138 (31.88%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 124 PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKL 183
           PS+ P ++   I +       +++EK L   D++R + RL +  K++++ FL+EEE++ L
Sbjct: 162 PSELPTKYMDKIREMHGQDVTLVVEKTLTATDMSRGQSRLSIPNKQMRQGFLSEEEIRIL 221

Query: 184 KSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHS-DALMRGEFV 243
              + ++V+++EP  E    LRLKK     K+  SY LT  W      ++ + LM+   +
Sbjct: 222 NRKEGIKVSLIEPCLEVSHGLRLKKWNYTSKKF-SYMLTERWNAVAHPYTRNELMKDVVI 281

Query: 244 RVWYFRVNGNLWFGVEDV 261
           ++W FRV+G+LWF +  V
Sbjct: 282 QLWSFRVDGSLWFCLRKV 298

[Close]

BLAST of Lsi01G016600 vs. ExPASy TrEMBL
Match: A0A059ALZ8 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00818 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-08
Identity = 44/142 (30.99%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 120 FQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEE 179
           F   P K P  +   I++       +++EK L   D++R + RL    K+I++ FL EEE
Sbjct: 114 FPRNPRKLPRWYMDKIQEMQGRDMTLVVEKTLTATDMSRGQSRLSTPNKQIRQSFLHEEE 173

Query: 180 MKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHS-DALMR 239
           ++ L   + ++V+++EP  E    L+LK+   K +   SY LT  W      ++ + LM+
Sbjct: 174 IRILDRKEGIKVSLIEPCLEVSHGLQLKRWNYKSRNF-SYVLTERWNGVAHPYARNELMK 233

Query: 240 GEFVRVWYFRVNGNLWFGVEDV 261
              +++W FRV+G+LWF ++ V
Sbjct: 234 DVVIQLWSFRVDGSLWFCLKKV 254

[Close]

BLAST of Lsi01G016600 vs. ExPASy TrEMBL
Match: A0A2C9VBB8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G155400 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.4e-07
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 124 PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKL 183
           P + P  +   IE    +  ++++ K L   D+N   DRL +  K+IK  FLTE+E  KL
Sbjct: 85  PPELPNEWMDKIEKQGGVDVKLVIMKQLFPTDLNPHHDRLSIPFKQIKNEFLTEDEKIKL 144

Query: 184 KSGKVMRVAVMEPDGE-TVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHSDALMRGEFV 243
              +++ V +MEP G  +  YLR    RS     + YALT  W   + R+ +   + + +
Sbjct: 145 NQQEIIAVKLMEPCGNVSEMYLRQWNLRS----TSFYALTTRWKKVLERNLE-FKQNDII 204

Query: 244 RVWYFRVNGNLWF 256
           ++W FRV G L F
Sbjct: 205 QLWSFRVRGELQF 212

[Close]

BLAST of Lsi01G016600 vs. NCBI nr
Match: XP_022156187.1 (VID27-like protein [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 6.4e-34
Identity = 113/296 (38.18%), Postives = 165/296 (55.74%), Query Frame = 0


Query: 8   GETTGD---DNAPSSYNESEN-SEMIEAEEEGDIINVIDEETAAERGRGKKSAAEKMKIV 67
           GETT D   D+ P +Y+ +E+ +  +  EE  +  +  +EE     G G     E  ++ 
Sbjct: 11  GETTDDESRDDNPPTYSPAESVNGALRREENDEEDDGEEEENGDGDGDGDDELDEDEEVD 70

Query: 68  NTETDQEATRSKEIEIGKQKIVYTNESTKS-------ASSSAVIVEERESSESSIDE-KT 127
               DQE T    +EI ++K V   E+T+S       AS++A    +++SSES  +E +T
Sbjct: 71  IMTVDQEIT-DAAMEIEEEKDVSMEETTQSESSFSAAASAAAFAAVDQDSSESDGEESET 130

Query: 128 ETKTFQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFL 187
           E++   NFP  FP  F K + DP SI PRILMEK LR  DV+  ++RL +  K++KE FL
Sbjct: 131 ESQISHNFPPNFPLEFTKRLVDPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFL 190

Query: 188 TEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHSDA 247
             +E  ++ +G+ M V V+EPD  TVS + L++RR  + +  SY LTG W   V R+SDA
Sbjct: 191 LLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSYVLTGQWSQVVARNSDA 250

Query: 248 LMRGEFVRVWYFR-----VNGNLWFGVEDVGEVK-KEFEILELMSEKWWHQNILAP 286
           L RG  VRVWYF      V   L F +E     K  + E ++ +++KWW QNI  P
Sbjct: 251 LKRGRRVRVWYFHDGDGDVGLRLCFAIEVFESGKGGDGEFVKELTQKWWGQNIFTP 305

[Close]

BLAST of Lsi01G016600 vs. NCBI nr
Match: KCW54891.1 (hypothetical protein EUGRSUZ_I00861 [Eucalyptus grandis])

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-09
Identity = 46/142 (32.39%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 120 FQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEE 179
           F   P + P R+ + I++       +++EK L   D++R + RL +  K+I++ FL+EEE
Sbjct: 94  FPRNPRELPRRYMEKIQEMQGRDMTLVVEKTLTATDMSRGQSRLSIPNKQIRQGFLSEEE 153

Query: 180 MKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHS-DALMR 239
           ++ L   + ++V+++EP  E VS L+LK+   + K + SY LT  W      +  + LM+
Sbjct: 154 IRMLDRKEGIKVSLIEPCLE-VSQLQLKRWNYQSK-IFSYVLTERWNGVAHPYERNELMK 213

Query: 240 GEFVRVWYFRVNGNLWFGVEDV 261
              +++W FRV+G+LWF ++ V
Sbjct: 214 DVVIQLWSFRVDGSLWFCLKRV 233

[Close]

BLAST of Lsi01G016600 vs. NCBI nr
Match: XP_039158352.1 (uncharacterized protein LOC120288436 [Eucalyptus grandis])

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-09
Identity = 42/138 (30.43%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 124 PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKL 183
           PSK P ++ + I++       +++EK L   D++R + RL +  K+I++ FL++EE++ L
Sbjct: 120 PSKLPTKYMEKIQEMQGRDTTLVVEKTLTATDMSRGQSRLSIPNKQIRQGFLSKEEIRIL 179

Query: 184 KSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHS-DALMRGEFV 243
              + ++++++EP  E    L+LK+ + K +   SY LT  W      ++ + LM+   +
Sbjct: 180 DRKEGIKISLIEPCLEVSHGLQLKRWKYKSRNF-SYVLTERWNGVAHPYARNELMKDVVI 239

Query: 244 RVWYFRVNGNLWFGVEDV 261
           ++W FRV+G+LWF ++ V
Sbjct: 240 QLWSFRVDGSLWFCLKKV 256

[Close]

BLAST of Lsi01G016600 vs. NCBI nr
Match: XP_039158359.1 (B3 domain-containing protein At2g32645-like [Eucalyptus grandis])

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-09
Identity = 44/138 (31.88%), Postives = 81/138 (58.70%), Query Frame = 0


Query: 124 PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKL 183
           PSK P ++   I++       +++EK L   D++R + RL +  K+I++ FL+EEE++ L
Sbjct: 78  PSKLPTKYMDKIQEMQGRDMTLVVEKTLTATDMSRGQSRLSIPNKQIRQGFLSEEEIRIL 137

Query: 184 KSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHS-DALMRGEFV 243
              + ++V+++EP  E    L+LK+   K +   SY LT  W      ++ + LM+   +
Sbjct: 138 DRKEGIKVSLIEPCLEVSHGLQLKRWNYKSRNF-SYVLTERWNGVAHPYARNELMKDVVI 197

Query: 244 RVWYFRVNGNLWFGVEDV 261
           ++W FRV+G+LWF ++ V
Sbjct: 198 QLWSFRVDGSLWFCLKRV 214

[Close]

BLAST of Lsi01G016600 vs. NCBI nr
Match: KCW54865.1 (hypothetical protein EUGRSUZ_I00811 [Eucalyptus grandis])

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-08
Identity = 44/138 (31.88%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 124 PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKL 183
           PS+ P ++   I +       +++EK L   D++R + RL +  K++++ FL+EEE++ L
Sbjct: 162 PSELPTKYMDKIREMHGQDVTLVVEKTLTATDMSRGQSRLSIPNKQMRQGFLSEEEIRIL 221

Query: 184 KSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHS-DALMRGEFV 243
              + ++V+++EP  E    LRLKK     K+  SY LT  W      ++ + LM+   +
Sbjct: 222 NRKEGIKVSLIEPCLEVSHGLRLKKWNYTSKKF-SYMLTERWNAVAHPYTRNELMKDVVI 281

Query: 244 RVWYFRVNGNLWFGVEDV 261
           ++W FRV+G+LWF +  V
Sbjct: 282 QLWSFRVDGSLWFCLRKV 298

The following BLAST results are available for this feature:

BLAST of Lsi01G016600 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G016600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRC9	3.1e-34	38.18	VID27-like protein OS=Momordica charantia OX=3673 GN=LOC111023136 PE=4 SV=1	[more]
A0A059AMI0	2.0e-09	32.39	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00861 PE=4 SV...	[more]
A0A059AN92	1.7e-08	31.88	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00811 PE=4 SV...	[more]
A0A059ALZ8	5.0e-08	30.99	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00818 PE=4 SV...	[more]
A0A2C9VBB8	9.4e-07	33.08	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G155400 PE=4 SV=...	[more]

BLAST of Lsi01G016600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156187.1	6.4e-34	38.18	VID27-like protein [Momordica charantia]	[more]
KCW54891.1	4.2e-09	32.39	hypothetical protein EUGRSUZ_I00861 [Eucalyptus grandis]	[more]
XP_039158352.1	4.2e-09	30.43	uncharacterized protein LOC120288436 [Eucalyptus grandis]	[more]
XP_039158359.1	5.4e-09	31.88	B3 domain-containing protein At2g32645-like [Eucalyptus grandis]	[more]
KCW54865.1	3.5e-08	31.88	hypothetical protein EUGRSUZ_I00811 [Eucalyptus grandis]	[more]

BLAST of Lsi01G016600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005508	B3 domain-containing protein At2g31720-like	PFAM	PF03754	DUF313	coord: 140..230 e-value: 2.7E-7 score: 30.8
IPR005508	B3 domain-containing protein At2g31720-like	PANTHER	PTHR31541	B3 DOMAIN PLANT PROTEIN-RELATED	coord: 50..261
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 144..269 e-value: 9.3E-8 score: 34.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25
None	No IPR available	PANTHER	PTHR31541:SF25	DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED	coord: 50..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G016600.1	Lsi01G016600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding