Lsi01G016420 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G016420
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPR domain zinc finger protein 8, putative isoform 1
Locationchr01: 14872058 .. 14872765 (+)
RNA-Seq ExpressionLsi01G016420
SyntenyLsi01G016420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTGCGCGATGTACTGATGAATCTAAGGAATCAGAAAATTCATCTACCAAATGTTGTAGTAAAGTTGAAGCTCAGCCGGAGATTGTTGAGCTAAGGGCTCCTATTGGACCTTCAACGCCTGATGCTGATAGAGAGAGTTGTGATTTTCCTTCTGATTGTAAATCCCCACTCACTCAGGTTGTGACTAGCAAACCTCTTCTGTTAACTTGTGTAGATTCTTTAGGTGAAAGGGCTGAAGCCCCTTTAGAGAGTTCTGATTCTTTTGATCCTCTTTGTAGCCCTCGTACTCCTAAGGATGGTGTTTTTGATCCCTTTTCCCCTGCCCCTGCTCATTTGGCTTTAGCTCCTCTCTCTAGAAAGTGTTTTACTGGCTCTGTTGGATTTGTTGCTCGCCGCCTTCAATTTGGTTCTTCTTCTTCTTCTTCTTCATTGCAGTTAGTGGAAGCTGAAGAAGAACAATCCATCTCTGATAGTGAGCTGTTGGAGGCAGTTTATGAGAATCTCTTGGAAGTTATTGTTTCCCATCAAGCTGAGTCTTCTCTTGCTCAGCTCTCAAGCTCTCAAAATGATTCGCTTGATTGTAATACCCCTCCTACTTCGTTTATGAGTGGGGTTGCTCAAACTTGTCCTCCTGCGCCGGTTAAGCCTTCGAGAAAATTGCGAAATCTCGACATGGGTTTGTGCAGAAAGCTTGAGTTCTGA

mRNA sequence

ATGGATTTTGCGCGATGTACTGATGAATCTAAGGAATCAGAAAATTCATCTACCAAATGTTGTAGTAAAGTTGAAGCTCAGCCGGAGATTGTTGAGCTAAGGGCTCCTATTGGACCTTCAACGCCTGATGCTGATAGAGAGAGTTGTGATTTTCCTTCTGATTGTAAATCCCCACTCACTCAGGTTGTGACTAGCAAACCTCTTCTGTTAACTTGTGTAGATTCTTTAGGTGAAAGGGCTGAAGCCCCTTTAGAGAGTTCTGATTCTTTTGATCCTCTTTGTAGCCCTCGTACTCCTAAGGATGGTGTTTTTGATCCCTTTTCCCCTGCCCCTGCTCATTTGGCTTTAGCTCCTCTCTCTAGAAAGTGTTTTACTGGCTCTGTTGGATTTGTTGCTCGCCGCCTTCAATTTGGTTCTTCTTCTTCTTCTTCTTCATTGCAGTTAGTGGAAGCTGAAGAAGAACAATCCATCTCTGATAGTGAGCTGTTGGAGGCAGTTTATGAGAATCTCTTGGAAGTTATTGTTTCCCATCAAGCTGAGTCTTCTCTTGCTCAGCTCTCAAGCTCTCAAAATGATTCGCTTGATTGTAATACCCCTCCTACTTCGTTTATGAGTGGGGTTGCTCAAACTTGTCCTCCTGCGCCGGTTAAGCCTTCGAGAAAATTGCGAAATCTCGACATGGGTTTGTGCAGAAAGCTTGAGTTCTGA

Coding sequence (CDS)

ATGGATTTTGCGCGATGTACTGATGAATCTAAGGAATCAGAAAATTCATCTACCAAATGTTGTAGTAAAGTTGAAGCTCAGCCGGAGATTGTTGAGCTAAGGGCTCCTATTGGACCTTCAACGCCTGATGCTGATAGAGAGAGTTGTGATTTTCCTTCTGATTGTAAATCCCCACTCACTCAGGTTGTGACTAGCAAACCTCTTCTGTTAACTTGTGTAGATTCTTTAGGTGAAAGGGCTGAAGCCCCTTTAGAGAGTTCTGATTCTTTTGATCCTCTTTGTAGCCCTCGTACTCCTAAGGATGGTGTTTTTGATCCCTTTTCCCCTGCCCCTGCTCATTTGGCTTTAGCTCCTCTCTCTAGAAAGTGTTTTACTGGCTCTGTTGGATTTGTTGCTCGCCGCCTTCAATTTGGTTCTTCTTCTTCTTCTTCTTCATTGCAGTTAGTGGAAGCTGAAGAAGAACAATCCATCTCTGATAGTGAGCTGTTGGAGGCAGTTTATGAGAATCTCTTGGAAGTTATTGTTTCCCATCAAGCTGAGTCTTCTCTTGCTCAGCTCTCAAGCTCTCAAAATGATTCGCTTGATTGTAATACCCCTCCTACTTCGTTTATGAGTGGGGTTGCTCAAACTTGTCCTCCTGCGCCGGTTAAGCCTTCGAGAAAATTGCGAAATCTCGACATGGGTTTGTGCAGAAAGCTTGAGTTCTGA

Protein sequence

MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLTQVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF
Homology
BLAST of Lsi01G016420 vs. ExPASy Swiss-Prot
Match: P85192 (Unknown protein 1 OS=Helianthus annuus OX=4232 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.7e-07
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 0

Query: 123 CFTGSVGFVARRLQFGSSSSSSSLQLVEAE--EEQSISDSELLEAVYENLLEVIVSHQAE 182
           C +GS     ++   G+S++   L     E   E    +  L+E VYE++LE I+  QAE
Sbjct: 65  CVSGS----NQKNNLGTSAAKKKLVFSSNEYVSENECENGSLMETVYESVLEDIICKQAE 124

Query: 183 SSLAQLSSSQNDSLDCNTPPTSFMS-GVAQTCPPAPVKPS--RKLRNLDMGLCRKLEF 236
             LA++  S +      TPP++  + G+ +TCP AP+K    R  R +DM LCRKL+F
Sbjct: 125 DILAEILVSGSSRDVLKTPPSAARADGLVETCPGAPMKRKQVRNKRTVDMNLCRKLDF 178

BLAST of Lsi01G016420 vs. ExPASy Swiss-Prot
Match: Q9SKN7 (Cyclin-dependent protein kinase inhibitor SMR11 OS=Arabidopsis thaliana OX=3702 GN=SMR11 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.1e-05
Identity = 52/159 (32.70%), Postives = 76/159 (47.80%), Query Frame = 0

Query: 81  EAPLESSDSFDPLCSPRTPKDGVFD--PFSPAPAHLALAPLSRKCFTGSVGFVARRLQFG 140
           E P E+ ++      P+TP   V D  P   + + L+   +  +   G V       Q  
Sbjct: 4   EEPCEAKETASSSIEPKTPNPNVPDSIPAIDSDSSLSEEEIVTEKDRGIVTLSPLCKQRI 63

Query: 141 SSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAESSLAQLSSSQNDSLDCNT 200
            S+S S   LV        SD E++E++Y+NLL VI+S Q   S+A +         C T
Sbjct: 64  DSASISDCVLV--------SDDEIIESLYQNLLRVILSLQQIQSVAVVPEIWCFD-GCKT 123

Query: 201 PPTSF----MSGVAQTCPPAPVKPSRKLRNLDMGLCRKL 234
           PP S      + V+ TCP AP+K ++  RN+D GL RKL
Sbjct: 124 PPPSSRNLDSNMVSDTCPGAPMKLTKISRNIDSGLRRKL 153

BLAST of Lsi01G016420 vs. ExPASy TrEMBL
Match: A0A0A0KYB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337350 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.6e-111
Identity = 217/235 (92.34%), Postives = 222/235 (94.47%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESENSSTKCCSKVE Q EIVELR PI PSTPDADRES DFPSD KSP+T
Sbjct: 1   MDFARCTDESKESENSSTKCCSKVETQVEIVELRVPIEPSTPDADRESGDFPSDSKSPIT 60

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPLLLTC+DSLGER EAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAP+S
Sbjct: 61  QVVTSKPLLLTCLDSLGERTEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPIS 120

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RK F+GSVGFV RRLQFG  SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE
Sbjct: 121 RKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSLAQLSSSQ+DS DCNTPPTSFMSGVAQTCP APVKPSRKLRNLDMGLCRKLEF
Sbjct: 181 SSLAQLSSSQSDSPDCNTPPTSFMSGVAQTCPAAPVKPSRKLRNLDMGLCRKLEF 233

BLAST of Lsi01G016420 vs. ExPASy TrEMBL
Match: A0A5A7UL34 (PR domain zinc finger protein 8, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00600 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.1e-109
Identity = 214/235 (91.06%), Postives = 220/235 (93.62%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESEN STKCCSKVE Q EIVELR PI PSTPDADRES DFPSD KSP+T
Sbjct: 1   MDFARCTDESKESENLSTKCCSKVETQLEIVELRVPIEPSTPDADRESGDFPSDSKSPIT 60

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPLLLTC+DSLGER EAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAP+S
Sbjct: 61  QVVTSKPLLLTCLDSLGERIEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPIS 120

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RK F+GSVGFV RRLQFG  SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE
Sbjct: 121 RKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSLAQ SSSQ+DS DCNTPPTSF+SGVAQTCP APVKPSRKLRNLDMGLCRKLEF
Sbjct: 181 SSLAQPSSSQSDSPDCNTPPTSFLSGVAQTCPAAPVKPSRKLRNLDMGLCRKLEF 233

BLAST of Lsi01G016420 vs. ExPASy TrEMBL
Match: A0A1S3CIW8 (uncharacterized protein LOC103501496 OS=Cucumis melo OX=3656 GN=LOC103501496 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.1e-109
Identity = 214/235 (91.06%), Postives = 220/235 (93.62%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESEN STKCCSKVE Q EIVELR PI PSTPDADRES DFPSD KSP+T
Sbjct: 76  MDFARCTDESKESENLSTKCCSKVETQLEIVELRVPIEPSTPDADRESGDFPSDSKSPIT 135

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPLLLTC+DSLGER EAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAP+S
Sbjct: 136 QVVTSKPLLLTCLDSLGERIEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPIS 195

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RK F+GSVGFV RRLQFG  SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE
Sbjct: 196 RKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 255

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSLAQ SSSQ+DS DCNTPPTSF+SGVAQTCP APVKPSRKLRNLDMGLCRKLEF
Sbjct: 256 SSLAQPSSSQSDSPDCNTPPTSFLSGVAQTCPAAPVKPSRKLRNLDMGLCRKLEF 308

BLAST of Lsi01G016420 vs. ExPASy TrEMBL
Match: A0A6J1DUE1 (uncharacterized protein LOC111023190 OS=Momordica charantia OX=3673 GN=LOC111023190 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.0e-95
Identity = 189/243 (77.78%), Postives = 212/243 (87.24%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELR-------APIGPSTPDADRESCDFPS 60
           MDFARC+DESKESE+ S+KCCSKVEAQPE+VELR       AP+GP+TPDADRES DFPS
Sbjct: 1   MDFARCSDESKESEHPSSKCCSKVEAQPEVVELRGPGAAMAAPLGPATPDADRESGDFPS 60

Query: 61  DCKSPLTQVVTSKPLLLTCVDSLGERAEAPLESS-DSFDPLCSPRTPKDGVFDPFSPAPA 120
           D KSP TQVV ++ L LTC+DSLGER+EAPLE   +S DPLCSPRTPKDGVFDPFSP PA
Sbjct: 61  DSKSPHTQVVPNRSLQLTCLDSLGERSEAPLEEGLESSDPLCSPRTPKDGVFDPFSPGPA 120

Query: 121 HLALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLE 180
           HLALAPLSRK F+GSVGFVARRLQFGSSSSSSS+QL E  EEQSISDSELLEAVYENLLE
Sbjct: 121 HLALAPLSRKYFSGSVGFVARRLQFGSSSSSSSMQLEEEAEEQSISDSELLEAVYENLLE 180

Query: 181 VIVSHQAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRK 236
           VIVS+QAE+SLAQLSSSQ+DS +C TPP  ++SG+AQTCPPAP+KP  K R+ D+GLCRK
Sbjct: 181 VIVSNQAEASLAQLSSSQSDSSNCITPPAQYLSGIAQTCPPAPIKPLGKFRDFDLGLCRK 240

BLAST of Lsi01G016420 vs. ExPASy TrEMBL
Match: A0A6J1IKP3 (uncharacterized protein LOC111478311 OS=Cucurbita maxima OX=3661 GN=LOC111478311 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.6e-91
Identity = 185/238 (77.73%), Postives = 202/238 (84.87%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKES+ S +KCCSK EAQPEIVELRAPI PSTPDADRES DFPSD KSPLT
Sbjct: 1   MDFARCTDESKESDQSPSKCCSKDEAQPEIVELRAPIEPSTPDADRESSDFPSDSKSPLT 60

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTS+ L+L+  D        PLE      PLCSPRTPKDGVFDPFSP PAHLALAPL 
Sbjct: 61  QVVTSRALVLSSSD--------PLE-----PPLCSPRTPKDGVFDPFSPGPAHLALAPLC 120

Query: 121 RKCFTGSVGFVARRLQFGSS---SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSH 180
           RKCF+GSVGFVARRLQF SS   SSSSSLQ VE+EEEQ+I+DSELLEAVYENLLE+I+SH
Sbjct: 121 RKCFSGSVGFVARRLQFDSSSSASSSSSLQFVESEEEQTITDSELLEAVYENLLELIISH 180

Query: 181 QAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           QAESSLA ++SS  DSLDCNTPP SF++G+AQTCP APVKPSRK RNLD+GLCRKLEF
Sbjct: 181 QAESSLAMITSSHTDSLDCNTPPASFITGIAQTCPAAPVKPSRKSRNLDLGLCRKLEF 225

BLAST of Lsi01G016420 vs. NCBI nr
Match: XP_004142723.1 (cyclin-dependent protein kinase inhibitor SMR11 isoform X1 [Cucumis sativus] >KGN54478.1 hypothetical protein Csa_012105 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 5.3e-111
Identity = 217/235 (92.34%), Postives = 222/235 (94.47%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESENSSTKCCSKVE Q EIVELR PI PSTPDADRES DFPSD KSP+T
Sbjct: 1   MDFARCTDESKESENSSTKCCSKVETQVEIVELRVPIEPSTPDADRESGDFPSDSKSPIT 60

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPLLLTC+DSLGER EAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAP+S
Sbjct: 61  QVVTSKPLLLTCLDSLGERTEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPIS 120

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RK F+GSVGFV RRLQFG  SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE
Sbjct: 121 RKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSLAQLSSSQ+DS DCNTPPTSFMSGVAQTCP APVKPSRKLRNLDMGLCRKLEF
Sbjct: 181 SSLAQLSSSQSDSPDCNTPPTSFMSGVAQTCPAAPVKPSRKLRNLDMGLCRKLEF 233

BLAST of Lsi01G016420 vs. NCBI nr
Match: XP_038883894.1 (unknown protein 1 [Benincasa hispida] >XP_038883895.1 unknown protein 1 [Benincasa hispida] >XP_038883896.1 unknown protein 1 [Benincasa hispida])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 210/235 (89.36%), Postives = 220/235 (93.62%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESEN STKCC+KVEAQPEIVELRAP+GPSTPDADRES DF SD KSPLT
Sbjct: 1   MDFARCTDESKESENLSTKCCNKVEAQPEIVELRAPLGPSTPDADRESGDFLSDSKSPLT 60

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPL LTC+DSL E+ EAPLE SDSFDPLCSPRTPKDGVFDPFSP PAHLALAP+S
Sbjct: 61  QVVTSKPLSLTCIDSLDEKIEAPLEDSDSFDPLCSPRTPKDGVFDPFSPGPAHLALAPIS 120

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RKCF GSVGFVARRLQFGSSSSSS LQ+VEAEEEQSISD+ELLEAVYENLLEVIVSHQAE
Sbjct: 121 RKCFNGSVGFVARRLQFGSSSSSSFLQIVEAEEEQSISDNELLEAVYENLLEVIVSHQAE 180

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSL QLSSSQ+DS DC+TPPTSF+SGVAQTCP APVKP RKLRNLDMGLCRKLEF
Sbjct: 181 SSLGQLSSSQSDSSDCSTPPTSFVSGVAQTCPAAPVKPLRKLRNLDMGLCRKLEF 235

BLAST of Lsi01G016420 vs. NCBI nr
Match: XP_008463308.1 (PREDICTED: uncharacterized protein LOC103501496 [Cucumis melo])

HSP 1 Score: 404.4 bits (1038), Expect = 6.5e-109
Identity = 214/235 (91.06%), Postives = 220/235 (93.62%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESEN STKCCSKVE Q EIVELR PI PSTPDADRES DFPSD KSP+T
Sbjct: 76  MDFARCTDESKESENLSTKCCSKVETQLEIVELRVPIEPSTPDADRESGDFPSDSKSPIT 135

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPLLLTC+DSLGER EAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAP+S
Sbjct: 136 QVVTSKPLLLTCLDSLGERIEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPIS 195

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RK F+GSVGFV RRLQFG  SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE
Sbjct: 196 RKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 255

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSLAQ SSSQ+DS DCNTPPTSF+SGVAQTCP APVKPSRKLRNLDMGLCRKLEF
Sbjct: 256 SSLAQPSSSQSDSPDCNTPPTSFLSGVAQTCPAAPVKPSRKLRNLDMGLCRKLEF 308

BLAST of Lsi01G016420 vs. NCBI nr
Match: KAA0055894.1 (PR domain zinc finger protein 8, putative isoform 1 [Cucumis melo var. makuwa] >TYK06202.1 PR domain zinc finger protein 8, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 404.4 bits (1038), Expect = 6.5e-109
Identity = 214/235 (91.06%), Postives = 220/235 (93.62%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELRAPIGPSTPDADRESCDFPSDCKSPLT 60
           MDFARCTDESKESEN STKCCSKVE Q EIVELR PI PSTPDADRES DFPSD KSP+T
Sbjct: 1   MDFARCTDESKESENLSTKCCSKVETQLEIVELRVPIEPSTPDADRESGDFPSDSKSPIT 60

Query: 61  QVVTSKPLLLTCVDSLGERAEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPLS 120
           QVVTSKPLLLTC+DSLGER EAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAP+S
Sbjct: 61  QVVTSKPLLLTCLDSLGERIEAPLESSDSFDPLCSPRTPKDGVFDPFSPAPAHLALAPIS 120

Query: 121 RKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180
           RK F+GSVGFV RRLQFG  SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE
Sbjct: 121 RKYFSGSVGFVPRRLQFG--SSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAE 180

Query: 181 SSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRKLEF 236
           SSLAQ SSSQ+DS DCNTPPTSF+SGVAQTCP APVKPSRKLRNLDMGLCRKLEF
Sbjct: 181 SSLAQPSSSQSDSPDCNTPPTSFLSGVAQTCPAAPVKPSRKLRNLDMGLCRKLEF 233

BLAST of Lsi01G016420 vs. NCBI nr
Match: XP_022156261.1 (uncharacterized protein LOC111023190 [Momordica charantia])

HSP 1 Score: 358.6 bits (919), Expect = 4.1e-95
Identity = 189/243 (77.78%), Postives = 212/243 (87.24%), Query Frame = 0

Query: 1   MDFARCTDESKESENSSTKCCSKVEAQPEIVELR-------APIGPSTPDADRESCDFPS 60
           MDFARC+DESKESE+ S+KCCSKVEAQPE+VELR       AP+GP+TPDADRES DFPS
Sbjct: 1   MDFARCSDESKESEHPSSKCCSKVEAQPEVVELRGPGAAMAAPLGPATPDADRESGDFPS 60

Query: 61  DCKSPLTQVVTSKPLLLTCVDSLGERAEAPLESS-DSFDPLCSPRTPKDGVFDPFSPAPA 120
           D KSP TQVV ++ L LTC+DSLGER+EAPLE   +S DPLCSPRTPKDGVFDPFSP PA
Sbjct: 61  DSKSPHTQVVPNRSLQLTCLDSLGERSEAPLEEGLESSDPLCSPRTPKDGVFDPFSPGPA 120

Query: 121 HLALAPLSRKCFTGSVGFVARRLQFGSSSSSSSLQLVEAEEEQSISDSELLEAVYENLLE 180
           HLALAPLSRK F+GSVGFVARRLQFGSSSSSSS+QL E  EEQSISDSELLEAVYENLLE
Sbjct: 121 HLALAPLSRKYFSGSVGFVARRLQFGSSSSSSSMQLEEEAEEQSISDSELLEAVYENLLE 180

Query: 181 VIVSHQAESSLAQLSSSQNDSLDCNTPPTSFMSGVAQTCPPAPVKPSRKLRNLDMGLCRK 236
           VIVS+QAE+SLAQLSSSQ+DS +C TPP  ++SG+AQTCPPAP+KP  K R+ D+GLCRK
Sbjct: 181 VIVSNQAEASLAQLSSSQSDSSNCITPPAQYLSGIAQTCPPAPIKPLGKFRDFDLGLCRK 240

BLAST of Lsi01G016420 vs. TAIR 10
Match: AT2G28330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08035.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-06
Identity = 52/159 (32.70%), Postives = 76/159 (47.80%), Query Frame = 0

Query: 81  EAPLESSDSFDPLCSPRTPKDGVFD--PFSPAPAHLALAPLSRKCFTGSVGFVARRLQFG 140
           E P E+ ++      P+TP   V D  P   + + L+   +  +   G V       Q  
Sbjct: 4   EEPCEAKETASSSIEPKTPNPNVPDSIPAIDSDSSLSEEEIVTEKDRGIVTLSPLCKQRI 63

Query: 141 SSSSSSSLQLVEAEEEQSISDSELLEAVYENLLEVIVSHQAESSLAQLSSSQNDSLDCNT 200
            S+S S   LV        SD E++E++Y+NLL VI+S Q   S+A +         C T
Sbjct: 64  DSASISDCVLV--------SDDEIIESLYQNLLRVILSLQQIQSVAVVPEIWCFD-GCKT 123

Query: 201 PPTSF----MSGVAQTCPPAPVKPSRKLRNLDMGLCRKL 234
           PP S      + V+ TCP AP+K ++  RN+D GL RKL
Sbjct: 124 PPPSSRNLDSNMVSDTCPGAPMKLTKISRNIDSGLRRKL 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P851929.7e-0735.59Unknown protein 1 OS=Helianthus annuus OX=4232 PE=1 SV=1[more]
Q9SKN73.1e-0532.70Cyclin-dependent protein kinase inhibitor SMR11 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A0A0KYB82.6e-11192.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337350 PE=4 SV=1[more]
A0A5A7UL343.1e-10991.06PR domain zinc finger protein 8, putative isoform 1 OS=Cucumis melo var. makuwa ... [more]
A0A1S3CIW83.1e-10991.06uncharacterized protein LOC103501496 OS=Cucumis melo OX=3656 GN=LOC103501496 PE=... [more]
A0A6J1DUE12.0e-9577.78uncharacterized protein LOC111023190 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1IKP36.6e-9177.73uncharacterized protein LOC111478311 OS=Cucurbita maxima OX=3661 GN=LOC111478311... [more]
Match NameE-valueIdentityDescription
XP_004142723.15.3e-11192.34cyclin-dependent protein kinase inhibitor SMR11 isoform X1 [Cucumis sativus] >KG... [more]
XP_038883894.11.3e-10989.36unknown protein 1 [Benincasa hispida] >XP_038883895.1 unknown protein 1 [Beninca... [more]
XP_008463308.16.5e-10991.06PREDICTED: uncharacterized protein LOC103501496 [Cucumis melo][more]
KAA0055894.16.5e-10991.06PR domain zinc finger protein 8, putative isoform 1 [Cucumis melo var. makuwa] >... [more]
XP_022156261.14.1e-9577.78uncharacterized protein LOC111023190 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT2G28330.12.2e-0632.70unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
IPR038971Cyclin-dependent protein kinase inhibitor SMR11/SMR16PANTHERPTHR36310CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR11coord: 1..235

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G016420.1Lsi01G016420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane