Lsi01G016340 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G016340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	KH domain-containing protein
Location	chr01: 14757383 .. 14763661 (-)
RNA-Seq Expression	Lsi01G016340
Synteny	Lsi01G016340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAACCTAATTTTAAAGAGAAAAAACCTAAATATTAAAGAGCAATTTCTGAAAAAGAAAAAAAAAAGAAATAAAAAGAAAAGAAAACGACGACCATTTACAATCATAGATTTTCCTCATTTCAGCTGCTTCCACCCTTTTACTCCTTAGCTCCGCCTCCGCCTCCGCCTCCCTTGTCGGAGCTGTCCTTATCCACCGTCTTCTCCGGCGACATCGTCGCCTTAATCTTCCAAAACCCTACTTCCACTTTCCAATCCCCCAATCCTCAGAACATCCACTTCTGCTCATAGTTTAATAGCTCACAGCCATGTCCGGTATGTACAGTACCAACTTCTCCCCTGCAAGAACTGCTTCTCCTCACATCAGAACTACTCCCGATGTCGACAGGTATCCGCTCTGATAACCCACTTCCCAGAATTGAATTTCCCTTTTTCTTGTTCTTATGTTTAATTTAGGATTTCTGAGTTTACTTAGCTTGATAAAAGCTGATTAATCGTTGAATAATCAATCCCCCTTTGGTTCTTTGTTCTTTGTTCTTTATCCTGTAGTCAGTACTTGTCGGAGCTACTAGCGGAGCATCAGAAGTTCGGTCCCTTCATGCAAGTTCTTCCGATCTGCGGCCGACTTTTGAATCAAGGTATTGTTCTTCTCTGAATTTTCGGTGTTCTGGACATTTTTTTAGTGTTTAATTGTTGCGGTGATGTATATGTGTATGTTTAGATCGGAGAAGCTGATGGGGATTTTTCCTTTTCCTTCTTTAGTCTTAACTCTTAACAGCGATTGTTCTTTTTGCCCTCGAGTTTGACTGTTGAATTGTGCATATGTTAGTCAAGGATAAGTTCTTTCATATTTTTGACTTGGGTTTTATGGGATAGAGTTTTTAGGAGGTTTTGATCAATGATTCATCCGCCTTTTAAGTTTGTTTGTATCTTGTTTTCATTATGTGTTGAAGAAAGAAAAATGTGTGTTGGCAATTACTTCTTATCTTTGTTCACTTCACTTTTTTCATTTCTTTGTTTTTTTCTATCCTTCGTTACTTAAAAAAAAAAAAAAAACGTAGAAATGGGTTTCTTTGTGTTCTTATTCTATGTTAGTATATTATAAGAAGTTATGAATTTCACTTGAAAATATCATTGAAAAATATATTGTTAAATATTATAATGGGGTATTTCTCTAGTTTGATATTTAGTAAGTCCTTTTTAAGGCAAAGACAACATTTCCGTTAATATTTTATAAAACAAATAATAAGAAATATGTATGATCGAAGTCGTTATCAAATGCATATCCTTTTCGAAATAAGGTGCTGGCAATGCAAATCAGTGAGTGAAAACATTATCAATCTAGAGAGTGCTTGAGAAACTAGGCTCGAGTGTGTATTTCTTGGGAAATGTCAATTTAATCTTATTAACCTCAAGTCTTTTAACTAAGCAGACATTTGCATATTGGTAACTTTTGTTTTGGCTTGTTGTGTTCTTGCCTTGCTCTTCTAATTGGTTTCATACCCAGCATATAACCTGAGTTTTCAGGTATTGGAAAAACCTTAGCTACTTCTGTATTGTGCTTAATTCTTCTAGTATATGATGTCCCACTTGTTTATACCTATCCATTCTAGTAGATTTTTCTTCTTAAAATTTGGATATTCTTTTATACTAATTTCTTTGACAAAAATCTCTACTGTATCACCATCATGAACCAATATACCATTGAAAGACTAAAATCCTTGTGGAAACAGTAAGCTTCAGAAAGCAATTTTCAAGCCTTTTGAGTTATTCCAATTGGAGCCTATTCGAATTGAAGGTTAAGTCATTAAGTACAATTTAGAATGCTATTAACTGCCAATCAGTAGTCGAGGTTCAAATTCATCTAAATTGGGTGATGCTGCAATCTCATGTTGACAATCTCTTCTTTGTTGTTCACTCATAATACCTTAGTCTGTGACATGAGAATTGAAGGCTGGATGTTGTTGTGGAAAAGTTTTTCAAGTGAAGGGTAATCATTTAATTAAGGTCATGAAGATATGTAGTAGTTTTAGAAATCAATGTACGAAAAATATGGTGCTTTTAGTCATTCTCCTGTATGAGCTTCATAGAGTAGGATCTGTTCTTTAGGTTGTTCCTTTGCATTCTTGAGTACTAAGGTTATTACTCTAGTGCTATTTGAACTTCAGGAGATCTCCTTGGAGTCTTTAGCATGTGATAGTCACGCAATGTTCCAAGGCTCTAGTTTCAACCTCCATTTAAATTGCCAAATAATGTGTTGATGAACTTTATTCTGCTCTGAGTAGTACAGTTTTTTTTTCTTTGCCCTTCCAACTTGATCTTGTTATAGAGTTCAGTTTTTTTTTTTTACTAGTATAGTATTCTTCTCTCTACTTAATGCACAAATATATTTCTATATCTTCCTTTTTATATATTTCTGCTTTTTAATTCTGTCAGCAACTTCTCACTGCAAGCTCTTTAAATGCAGAAATATTGCGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGCGACCTTGATAGGCTCCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATGTCTAATGTTAGTAGTACAGGTTTGAGTGGCTGGAATGGTCTTCCTCAGGAGGTAATTACTATTTTAGCATCAAAACTTCATTGGTAACTGGTGCCTGATACCCATTGTTCTCATAATTTTGAGTCCAATTTTACTATGTTTTGATATATGTGCTCACATATGCCGTAATTGTAACTTGATGGTTTGGAGGTAACATTGTAATCTCCCTCTAAAGTAGGGTCGTAAGTCATAGCTTGAGGGATTGGGACTGCGATAGAGGTTGCAGTGTGCCATTATTTAGAGCTAATTACAAAGCTTGTTTGTCACTTTCTTTACTATGAATTTTGGGAATATAAGCAGCAGATTTGATCTTGTCTTTGAGTCAGTATTTGTTCTGGGACAGAATATGTCTCATGAAAATGCTAGTTTCTTTTTCACTTTGTGGATCATCTTACTTTGTGTGCGTGTGTGTGTAAAATTTCAAGGTAGAAACGTGAAGCTTGTCTGTCTGTCTATCTATCTATATATTTTTTGGGTAAGAAATTGAGCTTTCATGGAGGGAAATGAAATAATCTACAAGGGCATGCAAAAAACTGGCCCAACAAAGAAAGAGGAACAACAGATAAACTACAAAAAGTGAAACTTGCGTATGTTAAGATCTTATCACTTTGCGAACTTTACTAGCATGTAAACTTCCAATCTTGAAAATCTTACTCCATTGACTTCCTTCAGAAATAAAAGAAGTGAGATGATTTCTTTGACTTCTCCAAGTTTAGGCTAATGGTAAATATATTTTACTATTTTTTACTTTCTTTGTGTGAGTGGTTCAAAAAGTTCTTCGCCAGTCTTGAGGGTTGTCTTGTTGGTCCTCCACTTAAAAGTTCAACTGAAAGCATCATCTATGAGACCAAAAAGCACCCTTTTGGATGAAATGCAAAAAACAAAGAATAAAATTTGTCAACTATTCATCTGTAGAAGTATGTGTAACAAATCTAGATAAACCCAACGTTTCTTACAAAAGTTGGCTTCTTGCTGCAAGCCTGCAACCTTTTCCAAAGCTATTGCAAGAACAACAATATATGCATTATGAATTTTTTTTTTCCTGGTTACGTTTTTCATGTTCCTATTCCATCTTCATTTTGGATCCCTTGATTGATTATTTTATCTCCTGTGCTTCCAGTCCTCTTATATTCATATAGAATTTTATCTATGTTAATAAGTCTTCTGGATAGTTTTCCTTGGTTTGTTTTAAAGTTGTATTAAGATGCTAGAACCTTTTGAAACATACAGCAGAGATTAAGTAGAGCCCCTGGGATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCACTCACCGTAAAGAGGATTCTACGTTTGGAAATACCCGTGGATACCTACCCTAATGTGAGTTCTGTCAAAGTACCAATGTTTTTCTATTTGCTGGTCATACGCCATCTGGCCTGTCTGACCCGTACTTGCACAAACATATATATTAATACTTGAAGTTTTGCTCTTTGTGGATAGTTCAATTTTGTAGGGCGGCTTTTGGGACCCCGTGGCAATTCCTTGAAACGGGTGGAAGTTACTACAGGTTGTCGTGTATATATTCGAGGGAAAGGGTCGATAAAGGATCCAGACAAGGTACTATAGTCTATAAGTATATTGCTATTTTGGAATTGATGAATGTCATTAACATTGATCCACATGGTGGATCTCTCTAGAGTCAAGACTAGTAAGAGATATTTTGCTTCTCTCATTGGATTGTTATCATTCTGTTAAGTAGTAGTATTTGTTATAAATCGCATTCTTACTTAATCTGTTAAACTTTTACATTATCAAGGAAGAGAAATTACGGGGAAGACCTGGTTATGAGCACTTGAACGAACCACTGCACATCTTGATTGAGGCAGACTTACCAGCCAATATTGTTGATATACGTCTCAGACAGGCACAAGAAATTATTGAAGAACTGCTCAAACCTGTGGTATGTATTCAACCTTGGATATGCTTTTGTAGTGCTTTTGGCTGGCCGAAATCAAATTTTCCATGCTCAAAAGAACTTCACTGTCAAAATCATCGTATTGTGGAAGAGATTTATAAGTTTGCTCATATAAAAAGCCAAAAGCTCCTGTTAAGTGTTTCTTACCAAAGTGATTGTTAGGGAGGACTTGTAAGCGCTCCCATACATACCTTTATAGTTTTTCTACTTAAGAGATTTATAAGTGTGCTCTTATAAAAAGCCAAAAGCTCTTGTTAAGTGTTTTTTACCAAAGTGATCGTTAGGGAGCACTTGAAATCTCTCAAGAGTGTAGAACAAACTATCAAAGTTATTTGTCATCACTTTTTATTGAAATGTATTTTTGCTAAACAAACTTATTTTAAAAGCGCTCCCATAAATACCTTTTTAGTTATTTTACTCGAGCTTTATTTTATTTATATTGGTAAAACATATCGGTTTAATTGTAACTCATATACTTGCTCACAAGATTAAAGTTGCTTTCAACAACATTTCTTGAATCAATGGGTCAAGGTATCTTTTTTACTTTTGCCTAGGCATCAACCTCTCATGGATTTCTTGCATTCCTCATCCTTTGATGCATTTGATTCAGATTTTCCCTTTTTCTTTTGCCAGTGCACTAACAAACTTCTGATTCCATTTGCAGGATGAGAGTCATGATTACATTAAAAGGCAGCAGTTACGCGAACTCGCGATGCTAAATTCGAGTTTCAGAGAAGAGAGTCCAGGACCTGGTGGTAGCGTCTCTCCTTTCAACTCAAGTGGAATGAAACGTGCCAAAACAGGTCGTTGAGTGCTCATATCATTTCGTACCCTAAACAATTTCTACCCCAGTCCAGATTTCGGTCACTTATATACCGTGAAGTGAATAGTGACCGACCGTGTGACATAGCTACAAGAAAGGGGAGGCTAACTTCAGTTCCAGGCGAGCCTTCTACTGGCTTTTTCTCTGTGTTCCCTTTAATATTCTTGACAGAAAGACTGGAAAAAGGTTAAAAAAGAAAAAAAAACAAAGGGTGAAAAGGAAAAAAAAATTGCTAGTATTAGTAGGCGATGGATTTTCATGTTGAGTGTAGGTTTGAATAGGTCAGTTTTCCAACAAAGTTAATATATTCATTGGATTTATTCTTGTGTTAGTGACTGCTGAGGAGTGTGTAGTTTTACATTATTGATGCAAAAACATTAGGAAGTGATGATGTAATACTATTTTATATTTGTTAGGTGTTGTATGCAATGTCAATGTCAATTATATTTTTGAACTGATGAAAGAACAGTGCAAAAACTCATACAAAGTGTTTGCTCAGCTTGTGTTTGCTTTCAAGTTTCAGAATATGATTCTCCTTTCTGTCTTTTCATTTTCTGAAAAAGTTCAAAACTTATGCCTTGTCTATTATTCCAACATGTATTGCATAGTTTTTTTTCCCTATTCTTTGGAGGAGTGTAAGCGGGTCGGTTTGGATTGGTTTTTGGATGATGTTAATGTTGAATCGACACGTTGGTTCAAGAGTAGTGAATTATTGACTGGACGGATTAAGTTTTGACTGATGAATTTACAAAGGTAATATAAATCGATATCGACCAACTTGCATTGCCATTGATTTGTTTTCCTTTTTCTCAGCAAAAGAATTTTTGGCCGTCGTCATCATGTCGAAAGACCTTGTGGTATCATCAGTTTTCTGTTAATTACTGAACTCATCCATCCATG

mRNA sequence

AAAAAGAAAACCTAATTTTAAAGAGAAAAAACCTAAATATTAAAGAGCAATTTCTGAAAAAGAAAAAAAAAAGAAATAAAAAGAAAAGAAAACGACGACCATTTACAATCATAGATTTTCCTCATTTCAGCTGCTTCCACCCTTTTACTCCTTAGCTCCGCCTCCGCCTCCGCCTCCCTTGTCGGAGCTGTCCTTATCCACCGTCTTCTCCGGCGACATCGTCGCCTTAATCTTCCAAAACCCTACTTCCACTTTCCAATCCCCCAATCCTCAGAACATCCACTTCTGCTCATAGTTTAATAGCTCACAGCCATGTCCGGTATGTACAGTACCAACTTCTCCCCTGCAAGAACTGCTTCTCCTCACATCAGAACTACTCCCGATGTCGACAGTCAGTACTTGTCGGAGCTACTAGCGGAGCATCAGAAGTTCGGTCCCTTCATGCAAGTTCTTCCGATCTGCGGCCGACTTTTGAATCAAGAAATATTGCGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGCGACCTTGATAGGCTCCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATGTCTAATGTTAGTAGTACAGGTTTGAGTGGCTGGAATGGTCTTCCTCAGGAGCAGAGATTAAGTAGAGCCCCTGGGATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCACTCACCGTAAAGAGGATTCTACGTTTGGAAATACCCGTGGATACCTACCCTAATTTCAATTTTGTAGGGCGGCTTTTGGGACCCCGTGGCAATTCCTTGAAACGGGTGGAAGTTACTACAGGTTGTCGTGTATATATTCGAGGGAAAGGGTCGATAAAGGATCCAGACAAGGAAGAGAAATTACGGGGAAGACCTGGTTATGAGCACTTGAACGAACCACTGCACATCTTGATTGAGGCAGACTTACCAGCCAATATTGTTGATATACGTCTCAGACAGGCACAAGAAATTATTGAAGAACTGCTCAAACCTGTGGATGAGAGTCATGATTACATTAAAAGGCAGCAGTTACGCGAACTCGCGATGCTAAATTCGAGTTTCAGAGAAGAGAGTCCAGGACCTGGTGGTAGCGTCTCTCCTTTCAACTCAAGTGGAATGAAACGTGCCAAAACAGGTCGTTGAGTGCTCATATCATTTCGTACCCTAAACAATTTCTACCCCAGTCCAGATTTCGGTCACTTATATACCGTGAAGTGAATAGTGACCGACCGTGTGACATAGCTACAAGAAAGGGGAGGCTAACTTCAGTTCCAGCAAAAGAATTTTTGGCCGTCGTCATCATGTCGAAAGACCTTGTGGTATCATCAGTTTTCTGTTAATTACTGAACTCATCCATCCATG

Coding sequence (CDS)

ATGTCCGGTATGTACAGTACCAACTTCTCCCCTGCAAGAACTGCTTCTCCTCACATCAGAACTACTCCCGATGTCGACAGTCAGTACTTGTCGGAGCTACTAGCGGAGCATCAGAAGTTCGGTCCCTTCATGCAAGTTCTTCCGATCTGCGGCCGACTTTTGAATCAAGAAATATTGCGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGCGACCTTGATAGGCTCCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATGTCTAATGTTAGTAGTACAGGTTTGAGTGGCTGGAATGGTCTTCCTCAGGAGCAGAGATTAAGTAGAGCCCCTGGGATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCACTCACCGTAAAGAGGATTCTACGTTTGGAAATACCCGTGGATACCTACCCTAATTTCAATTTTGTAGGGCGGCTTTTGGGACCCCGTGGCAATTCCTTGAAACGGGTGGAAGTTACTACAGGTTGTCGTGTATATATTCGAGGGAAAGGGTCGATAAAGGATCCAGACAAGGAAGAGAAATTACGGGGAAGACCTGGTTATGAGCACTTGAACGAACCACTGCACATCTTGATTGAGGCAGACTTACCAGCCAATATTGTTGATATACGTCTCAGACAGGCACAAGAAATTATTGAAGAACTGCTCAAACCTGTGGATGAGAGTCATGATTACATTAAAAGGCAGCAGTTACGCGAACTCGCGATGCTAAATTCGAGTTTCAGAGAAGAGAGTCCAGGACCTGGTGGTAGCGTCTCTCCTTTCAACTCAAGTGGAATGAAACGTGCCAAAACAGGTCGTTGA

Protein sequence

MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR

Homology

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BLAST of Lsi01G016340 vs. ExPASy Swiss-Prot
Match: Q9ZVI3 (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 7.8e-128
Identity = 241/287 (83.97%), Postives = 257/287 (89.55%), Query Frame = 0


Query: 1   MSGMY--STNFSPARTASPHIRTTPDVD-SQYLSELLAEHQKFGPFMQVLPICGRLLNQE 60
           MSG+Y  S+ FSPAR ASP IR+TP++D SQYL+ELLAEHQK  PFMQVLPIC RLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMT 120
           + RVSGMMSNQGF D DRLRHRSPSPMASSNLMSNVS+TGL GWNGL QE RLS  PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG 180
           MDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 KGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDES 240
           KGSIKDP+KE+KLRGRPGYEHLNE LHILIEADLPA+IV+IRLRQAQEIIEELLKPVDES
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 HDYIKRQQLRELAMLNS-SFREESPGP--GGSVSPFNSSGMKRAKTG 282
            D+IKRQQLRELA+LNS + REESPGP  GGSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Lsi01G016340 vs. ExPASy Swiss-Prot
Match: Q8GYR4 (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.5e-126
Identity = 228/284 (80.28%), Postives = 249/284 (87.68%), Query Frame = 0


Query: 1   MSGMYS-TNFSPARTASPHIRT-TPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEI 60
           MSG+Y+  NFSP+R ASP IRT + DVDSQY+S+LLAEHQK GPFMQVLPIC RLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTM 120
            R++GMM NQGF D DRLRHRSPSPMAS NLMSNVS  GL GWNGLP E R+    GM M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGGPHGMAM 120

Query: 121 DWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGK 180
           +WQ APASPSS  VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRGK
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 GSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESH 240
           GSIKDP+KEEKL+G+PGYEHLNE LHILIEADLP +IVDI+LRQAQEIIEEL+KPVDES 
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 241 DYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           DYIKRQQLRELA+LNS+ RE SPGP GSVSPFNS+ MKR KTGR
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Lsi01G016340 vs. ExPASy Swiss-Prot
Match: Q75GR5 (KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPIN1 PE=1 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 9.2e-113
Identity = 206/283 (72.79%), Postives = 237/283 (83.75%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTP-DVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEIL 60
           MSG+YS  FSPAR  SP IR+ P DVDSQYL+ELLAEHQK GPFMQVLPIC +LL+QEI+
Sbjct: 1   MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIM 60

Query: 61  RVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMD 120
           RVS ++ N GF D DR R RSPSPM+S N  SN S  G S WNGL QE RL    G +MD
Sbjct: 61  RVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQE-RLGFPQGTSMD 120

Query: 121 WQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKG 180
           WQ AP SPSS  VK+ILRL++PVD+YPNFNFVGR+LGPRGNSLKRVE +TGCRV+IRGKG
Sbjct: 121 WQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKG 180

Query: 181 SIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHD 240
           SIKDP KE+KLRG+PGYEHL++PLHILIEA+ PA+I+D RLR AQE+IEELLKPVDES D
Sbjct: 181 SIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQD 240

Query: 241 YIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           + KRQQLRELAMLNS+ RE+SP P GSVSPF++ GMKRAKTG+
Sbjct: 241 FYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAKTGQ 281

[Close]

BLAST of Lsi01G016340 vs. ExPASy Swiss-Prot
Match: Q0WLR1 (KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26480 PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.4e-78
Identity = 156/280 (55.71%), Postives = 198/280 (70.71%), Query Frame = 0


Query: 2   SGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILRV 61
           S   S NFS    + P      +   +YLSELLAE  K  PF+ VLP   RL+NQEILRV
Sbjct: 37  SAPQSPNFSGGLRSQPSFLVEQE---KYLSELLAERHKLTPFLPVLPHVCRLMNQEILRV 96

Query: 62  SGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGW-NGLPQEQRLSRAPGMTMDW 121
           + ++ N     L + R   PSP+AS  +  N S   ++GW +  P E+ +S +P    +W
Sbjct: 97  TTLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSP--APNW 156

Query: 122 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 181
            ++P S S L VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVE +T CRV IRG+GS
Sbjct: 157 LNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGS 216

Query: 182 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 241
           IKDP KE+ +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL PV+E+HD+
Sbjct: 217 IKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDF 276

Query: 242 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKT 281
            K+QQLRELA+LN S REE     GS+SP+NS GMKRAKT
Sbjct: 277 YKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Lsi01G016340 vs. ExPASy Swiss-Prot
Match: Q9FKT4 (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.8e-77
Identity = 158/286 (55.24%), Postives = 201/286 (70.28%), Query Frame = 0


Query: 5   YSTNFS--PARTASPH----IRTTPDV---DSQYLSELLAEHQKFGPFMQVLPICGRLLN 64
           YS++ S  P+   SP+    +R+   V     +YLSELLAE  K  PF+ VLP   RLLN
Sbjct: 32  YSSSLSVPPSAPQSPNYSGGLRSQSSVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLN 91

Query: 65  QEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGW-NGLPQEQRLSRAP 124
           QEILRV+ ++ N        L H  PSP+AS  +  N +   ++GW +  P E+ +  +P
Sbjct: 92  QEILRVTTLLENATVLSQSGLDH--PSPLASGGIFQN-ARADMNGWASQFPSERSVPSSP 151

Query: 125 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 184
           G   +W ++P S S L  KR +R++IPVD YPNFNFVGRLLGPRGNSLKRVE +T CRV 
Sbjct: 152 G--PNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVL 211

Query: 185 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 244
           IRG+GSIKDP KEE +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL P+
Sbjct: 212 IRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPM 271

Query: 245 DESHDYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKT 281
           +E+HD  K+QQLRELA+LN + REE     GSVSP+NS GMKRAKT
Sbjct: 272 EETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312

[Close]

BLAST of Lsi01G016340 vs. ExPASy TrEMBL
Match: A0A1S3CIV3 (KH domain-containing protein At2g38610 OS=Cucumis melo OX=3656 GN=LOC103501485 PE=4 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 2.0e-155
Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQE RLSRAPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQE-RLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Lsi01G016340 vs. ExPASy TrEMBL
Match: A0A0A0KXW7 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337270 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.5e-155
Identity = 279/282 (98.94%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLM+NVSSTGLSGWNGLPQE RLSRAPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMTNVSSTGLSGWNGLPQE-RLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Lsi01G016340 vs. ExPASy TrEMBL
Match: A0A6J1EB88 (KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432543 PE=4 SV=1)

HSP 1 Score: 554.3 bits (1427), Expect = 2.9e-154
Identity = 276/282 (97.87%), Postives = 277/282 (98.23%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL+SNVSS GLSGWNGLPQEQRLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Lsi01G016340 vs. ExPASy TrEMBL
Match: A0A6J1HTR7 (KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466075 PE=4 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.1e-153
Identity = 275/282 (97.52%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFM VLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMHVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL+SNVSS GLSGWNGLPQEQRLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Lsi01G016340 vs. ExPASy TrEMBL
Match: A0A5D3C4T5 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00820 PE=4 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.1e-153
Identity = 277/279 (99.28%), Postives = 278/279 (99.64%), Query Frame = 0


Query: 4   MYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILRVSG 63
           MYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILRVSG
Sbjct: 1   MYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILRVSG 60

Query: 64  MMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDWQSA 123
           MMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQE RLSRAPGMTMDWQSA
Sbjct: 61  MMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQE-RLSRAPGMTMDWQSA 120

Query: 124 PASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSIKD 183
           PASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSIKD
Sbjct: 121 PASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSIKD 180

Query: 184 PDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDYIKR 243
           PDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESHDYIKR
Sbjct: 181 PDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDYIKR 240

Query: 244 QQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           QQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 QQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 278

[Close]

BLAST of Lsi01G016340 vs. NCBI nr
Match: XP_011653733.1 (KH domain-containing protein At2g38610 isoform X1 [Cucumis sativus] >KAE8649596.1 hypothetical protein Csa_012547 [Cucumis sativus])

HSP 1 Score: 563.5 bits (1451), Expect = 1.0e-156
Identity = 280/282 (99.29%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLM+NVSSTGLSGWNGLPQEQRLSRAPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMTNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Lsi01G016340 vs. NCBI nr
Match: XP_008463293.1 (PREDICTED: KH domain-containing protein At2g38610 [Cucumis melo])

HSP 1 Score: 558.1 bits (1437), Expect = 4.2e-155
Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQE RLSRAPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQE-RLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Lsi01G016340 vs. NCBI nr
Match: XP_038882687.1 (KH domain-containing protein At2g38610 isoform X1 [Benincasa hispida])

HSP 1 Score: 557.8 bits (1436), Expect = 5.5e-155
Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMAS+NLMSNV STGLSGWNGLPQEQRLSRAPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASANLMSNV-STGLSGWNGLPQEQRLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Lsi01G016340 vs. NCBI nr
Match: XP_004142668.1 (KH domain-containing protein At2g38610 isoform X2 [Cucumis sativus])

HSP 1 Score: 557.0 bits (1434), Expect = 9.4e-155
Identity = 279/282 (98.94%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNLM+NVSSTGLSGWNGLPQE RLSRAPGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMTNVSSTGLSGWNGLPQE-RLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Lsi01G016340 vs. NCBI nr
Match: XP_022925242.1 (KH domain-containing protein At3g08620-like isoform X1 [Cucurbita moschata] >KAG7027519.1 KH domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 554.3 bits (1427), Expect = 6.1e-154
Identity = 276/282 (97.87%), Postives = 277/282 (98.23%), Query Frame = 0


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL+SNVSS GLSGWNGLPQEQRLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP NIVDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Lsi01G016340 vs. TAIR 10
Match: AT2G38610.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 458.0 bits (1177), Expect = 5.5e-129
Identity = 241/287 (83.97%), Postives = 257/287 (89.55%), Query Frame = 0


Query: 1   MSGMY--STNFSPARTASPHIRTTPDVD-SQYLSELLAEHQKFGPFMQVLPICGRLLNQE 60
           MSG+Y  S+ FSPAR ASP IR+TP++D SQYL+ELLAEHQK  PFMQVLPIC RLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMT 120
           + RVSGMMSNQGF D DRLRHRSPSPMASSNLMSNVS+TGL GWNGL QE RLS  PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG 180
           MDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 KGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDES 240
           KGSIKDP+KE+KLRGRPGYEHLNE LHILIEADLPA+IV+IRLRQAQEIIEELLKPVDES
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 HDYIKRQQLRELAMLNS-SFREESPGP--GGSVSPFNSSGMKRAKTG 282
            D+IKRQQLRELA+LNS + REESPGP  GGSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Lsi01G016340 vs. TAIR 10
Match: AT2G38610.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 458.0 bits (1177), Expect = 5.5e-129
Identity = 241/287 (83.97%), Postives = 257/287 (89.55%), Query Frame = 0


Query: 1   MSGMY--STNFSPARTASPHIRTTPDVD-SQYLSELLAEHQKFGPFMQVLPICGRLLNQE 60
           MSG+Y  S+ FSPAR ASP IR+TP++D SQYL+ELLAEHQK  PFMQVLPIC RLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMT 120
           + RVSGMMSNQGF D DRLRHRSPSPMASSNLMSNVS+TGL GWNGL QE RLS  PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG 180
           MDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 KGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDES 240
           KGSIKDP+KE+KLRGRPGYEHLNE LHILIEADLPA+IV+IRLRQAQEIIEELLKPVDES
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 HDYIKRQQLRELAMLNS-SFREESPGP--GGSVSPFNSSGMKRAKTG 282
            D+IKRQQLRELA+LNS + REESPGP  GGSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Lsi01G016340 vs. TAIR 10
Match: AT3G08620.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 453.8 bits (1166), Expect = 1.0e-127
Identity = 228/284 (80.28%), Postives = 249/284 (87.68%), Query Frame = 0


Query: 1   MSGMYS-TNFSPARTASPHIRT-TPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEI 60
           MSG+Y+  NFSP+R ASP IRT + DVDSQY+S+LLAEHQK GPFMQVLPIC RLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTM 120
            R++GMM NQGF D DRLRHRSPSPMAS NLMSNVS  GL GWNGLP E R+    GM M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGGPHGMAM 120

Query: 121 DWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGK 180
           +WQ APASPSS  VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRGK
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 GSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESH 240
           GSIKDP+KEEKL+G+PGYEHLNE LHILIEADLP +IVDI+LRQAQEIIEEL+KPVDES 
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 241 DYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           DYIKRQQLRELA+LNS+ RE SPGP GSVSPFNS+ MKR KTGR
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Lsi01G016340 vs. TAIR 10
Match: AT4G26480.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 292.0 bits (746), Expect = 5.3e-79
Identity = 156/280 (55.71%), Postives = 198/280 (70.71%), Query Frame = 0


Query: 2   SGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILRV 61
           S   S NFS    + P      +   +YLSELLAE  K  PF+ VLP   RL+NQEILRV
Sbjct: 37  SAPQSPNFSGGLRSQPSFLVEQE---KYLSELLAERHKLTPFLPVLPHVCRLMNQEILRV 96

Query: 62  SGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGW-NGLPQEQRLSRAPGMTMDW 121
           + ++ N     L + R   PSP+AS  +  N S   ++GW +  P E+ +S +P    +W
Sbjct: 97  TTLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSP--APNW 156

Query: 122 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 181
            ++P S S L VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVE +T CRV IRG+GS
Sbjct: 157 LNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGS 216

Query: 182 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESHDY 241
           IKDP KE+ +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL PV+E+HD+
Sbjct: 217 IKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDF 276

Query: 242 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKT 281
            K+QQLRELA+LN S REE     GS+SP+NS GMKRAKT
Sbjct: 277 YKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Lsi01G016340 vs. TAIR 10
Match: AT5G56140.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 289.3 bits (739), Expect = 3.4e-78
Identity = 158/286 (55.24%), Postives = 201/286 (70.28%), Query Frame = 0


Query: 5   YSTNFS--PARTASPH----IRTTPDV---DSQYLSELLAEHQKFGPFMQVLPICGRLLN 64
           YS++ S  P+   SP+    +R+   V     +YLSELLAE  K  PF+ VLP   RLLN
Sbjct: 32  YSSSLSVPPSAPQSPNYSGGLRSQSSVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLN 91

Query: 65  QEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGW-NGLPQEQRLSRAP 124
           QEILRV+ ++ N        L H  PSP+AS  +  N +   ++GW +  P E+ +  +P
Sbjct: 92  QEILRVTTLLENATVLSQSGLDH--PSPLASGGIFQN-ARADMNGWASQFPSERSVPSSP 151

Query: 125 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 184
           G   +W ++P S S L  KR +R++IPVD YPNFNFVGRLLGPRGNSLKRVE +T CRV 
Sbjct: 152 G--PNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVL 211

Query: 185 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 244
           IRG+GSIKDP KEE +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL P+
Sbjct: 212 IRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPM 271

Query: 245 DESHDYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKT 281
           +E+HD  K+QQLRELA+LN + REE     GSVSP+NS GMKRAKT
Sbjct: 272 EETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312

The following BLAST results are available for this feature:

BLAST of Lsi01G016340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVI3	7.8e-128	83.97	KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38...	[more]
Q8GYR4	1.5e-126	80.28	KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08...	[more]
Q75GR5	9.2e-113	72.79	KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
Q0WLR1	7.4e-78	55.71	KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26...	[more]
Q9FKT4	4.8e-77	55.24	KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56...	[more]

BLAST of Lsi01G016340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CIV3	2.0e-155	99.29	KH domain-containing protein At2g38610 OS=Cucumis melo OX=3656 GN=LOC103501485 P...	[more]
A0A0A0KXW7	4.5e-155	98.94	KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337270 PE=4 SV=...	[more]
A0A6J1EB88	2.9e-154	97.87	KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1HTR7	1.1e-153	97.52	KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A5D3C4T5	1.1e-153	99.28	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Lsi01G016340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653733.1	1.0e-156	99.29	KH domain-containing protein At2g38610 isoform X1 [Cucumis sativus] >KAE8649596....	[more]
XP_008463293.1	4.2e-155	99.29	PREDICTED: KH domain-containing protein At2g38610 [Cucumis melo]	[more]
XP_038882687.1	5.5e-155	99.29	KH domain-containing protein At2g38610 isoform X1 [Benincasa hispida]	[more]
XP_004142668.1	9.4e-155	98.94	KH domain-containing protein At2g38610 isoform X2 [Cucumis sativus]	[more]
XP_022925242.1	6.1e-154	97.87	KH domain-containing protein At3g08620-like isoform X1 [Cucurbita moschata] >KAG...	[more]

BLAST of Lsi01G016340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38610.1	5.5e-129	83.97	RNA-binding KH domain-containing protein	[more]
AT2G38610.2	5.5e-129	83.97	RNA-binding KH domain-containing protein	[more]
AT3G08620.1	1.0e-127	80.28	RNA-binding KH domain-containing protein	[more]
AT4G26480.1	5.3e-79	55.71	RNA-binding KH domain-containing protein	[more]
AT5G56140.1	3.4e-78	55.24	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 132..232 e-value: 1.3E-5 score: 34.6
IPR032377	STAR protein, homodimerisation region	PFAM	PF16544	STAR_dimer	coord: 23..70 e-value: 9.2E-13 score: 47.6
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 149..185 e-value: 1.2E-4 score: 21.8
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 19..263 e-value: 9.4E-69 score: 233.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 139..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11208:SF114	STAR PROTEIN, HOMODIMERIZATION REGION-RELATED	coord: 2..282
None	No IPR available	CDD	cd02395	SF1_like-KH	coord: 137..257 e-value: 2.98907E-54 score: 170.117
IPR045071	KH domain-containing BBP-like	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 2..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G016340.1	Lsi01G016340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048024	regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding