Lsi01G016160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G016160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Non-specific lipid-transfer protein
Location	chr01: 14536507 .. 14536875 (+)
RNA-Seq Expression	Lsi01G016160
Synteny	Lsi01G016160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTAACCTAATCACGATTGTAAAGTTGGGTTTGGTTGTGACATTCCTCTGCGCCGTGATAAGTGGACAGGTGACGACAGAGGCGGCCGTGACGTGTAACCAAGTGGTCAGCGACTTGAGTCCTTGTATTCAGTACGTTACCGGTGGAGGAGTCCCGTCGTCGACCTGTTGCTATGGTGTGGAACAACTAAATGCGGTAGCTCAGACGACACCGGACCGACAAGCAGTATGTCGGTGCTTGAAATCAGTGGTTGATGGAGTTAAGTATAATGATCAAAACGTTGCTAATGCTGCTGCTCTTCCGAGCAAGTGCGGCGTCAAGCTTCCCTACGCTATCAACCCCAATGTCAACTGTAACGCGTAA

mRNA sequence

ATGGCAAGTAACCTAATCACGATTGTAAAGTTGGGTTTGGTTGTGACATTCCTCTGCGCCGTGATAAGTGGACAGGTGACGACAGAGGCGGCCGTGACGTGTAACCAAGTGGTCAGCGACTTGAGTCCTTGTATTCAGTACGTTACCGGTGGAGGAGTCCCGTCGTCGACCTGTTGCTATGGTGTGGAACAACTAAATGCGGTAGCTCAGACGACACCGGACCGACAAGCAGTATGTCGGTGCTTGAAATCAGTGGTTGATGGAGTTAAGTATAATGATCAAAACGTTGCTAATGCTGCTGCTCTTCCGAGCAAGTGCGGCGTCAAGCTTCCCTACGCTATCAACCCCAATGTCAACTGTAACGCGTAA

Coding sequence (CDS)

ATGGCAAGTAACCTAATCACGATTGTAAAGTTGGGTTTGGTTGTGACATTCCTCTGCGCCGTGATAAGTGGACAGGTGACGACAGAGGCGGCCGTGACGTGTAACCAAGTGGTCAGCGACTTGAGTCCTTGTATTCAGTACGTTACCGGTGGAGGAGTCCCGTCGTCGACCTGTTGCTATGGTGTGGAACAACTAAATGCGGTAGCTCAGACGACACCGGACCGACAAGCAGTATGTCGGTGCTTGAAATCAGTGGTTGATGGAGTTAAGTATAATGATCAAAACGTTGCTAATGCTGCTGCTCTTCCGAGCAAGTGCGGCGTCAAGCTTCCCTACGCTATCAACCCCAATGTCAACTGTAACGCGTAA

Protein sequence

MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNCNA

Homology

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BLAST of Lsi01G016160 vs. ExPASy Swiss-Prot
Match: Q43019 (Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-25
Identity = 53/115 (46.09%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 8   IVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNA 67
           ++KL  +V  +C +  G     AAV+C QVV++L+PCI YV  GG  + +CC GV  L +
Sbjct: 7   LLKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYS 66

Query: 68  VAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNCNA 123
           +AQTT DRQ++C CLK  V+G+ Y + N   AA LP KCGV +PY I+P+ +C +
Sbjct: 67  LAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKS 121

[Close]

BLAST of Lsi01G016160 vs. ExPASy Swiss-Prot
Match: A0AT29 (Non-specific lipid-transfer protein 2 OS=Lens culinaris OX=3864 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-24
Identity = 58/113 (51.33%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 9   VKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNAV 68
           +KL  VV  +C V+   +  E A++C  V SDLSPC+ Y+TGG  PS  CC GV++L A 
Sbjct: 5   MKLACVVLVICMVVIAPM-AEGAISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAA 64

Query: 69  AQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNCN 122
           A TTPDRQA C CLKS    +     N  NAAALP KCGV +PY I+   NCN
Sbjct: 65  ANTTPDRQAACNCLKSAAGSI--TKLNTNNAAALPGKCGVNIPYKISTTTNCN 114

[Close]

BLAST of Lsi01G016160 vs. ExPASy Swiss-Prot
Match: A0AT32 (Non-specific lipid-transfer protein 6 OS=Lens culinaris OX=3864 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-24
Identity = 58/113 (51.33%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 9   VKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNAV 68
           +KL  VV  +C V+   +  E A++C  V SDLSPC+ Y+TGG  PS  CC GV++L A 
Sbjct: 5   MKLACVVLVMCMVVIAPM-AEGAISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAA 64

Query: 69  AQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNCN 122
           A TTPDRQA C CLKS    +     N  NAAALP KCGV +PY I+ + NCN
Sbjct: 65  ANTTPDRQAACNCLKSAAGSI--TKLNTNNAAALPGKCGVDIPYKISTSTNCN 114

[Close]

BLAST of Lsi01G016160 vs. ExPASy Swiss-Prot
Match: A0AT31 (Non-specific lipid-transfer protein 5 OS=Lens culinaris OX=3864 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-24
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 9   VKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNAV 68
           +KL  VV  +C +++     E A++C  V  DLSPC+ Y+TGG  PS  CC GV++L A 
Sbjct: 5   MKLACVVLVMCMIVAPM--AEGAISCGAVTGDLSPCLTYLTGGPGPSPQCCGGVKKLLAA 64

Query: 69  AQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNCN 122
           A TTPDRQA C C+KS    +     N  NAAALP KCGV +PY I+ + NCN
Sbjct: 65  ANTTPDRQAACNCMKSAASSI--TKLNTNNAAALPGKCGVNIPYKISTSTNCN 113

[Close]

BLAST of Lsi01G016160 vs. ExPASy Swiss-Prot
Match: A0AT33 (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris OX=3864 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-24
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 14  VVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNAVAQTTP 73
           VV  +C V+   +  E A++C  V SDLSPC+ Y+TGG  PS  CC GV++L A A TTP
Sbjct: 2   VVLVMCMVVIAPM-AEGAISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTP 61

Query: 74  DRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNCN 122
           DRQA C CLKS    +     N  NAAALP KCGV +PY I+ + NCN
Sbjct: 62  DRQAACNCLKSAAGSI--TKLNTNNAAALPGKCGVNIPYKISTSTNCN 106

[Close]

BLAST of Lsi01G016160 vs. ExPASy TrEMBL
Match: A0A0A0KY77 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.7e-46
Identity = 93/121 (76.86%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MASNLITI+KLGL VTFL AVI G VTTEA V+CNQV+++L PC+ YVTGGG PSS CC 
Sbjct: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV+QL+  A+TTPDRQAVCRCLKS+V+GVKYN QNVANAAALP+KCGV LPY+INPNV+C
Sbjct: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of Lsi01G016160 vs. ExPASy TrEMBL
Match: A0A5D3CEZ6 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00580 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.1e-44
Identity = 93/121 (76.86%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MASNLITI+KLGL VT L AVI G VTTEA VTCNQVVS+LSPCI YVTGGG PS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV QLN  AQTTPDRQ VCRCLKS+++GV YN QNVANAAALP+KCGV LPY INPN +C
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 N 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Lsi01G016160 vs. ExPASy TrEMBL
Match: A0A1S3CIS8 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.1e-44
Identity = 93/121 (76.86%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MASNLITI+KLGL VT L AVI G VTTEA VTCNQVVS+LSPCI YVTGGG PS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV QLN  AQTTPDRQ VCRCLKS+++GV YN QNVANAAALP+KCGV LPY INPN +C
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 N 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Lsi01G016160 vs. ExPASy TrEMBL
Match: A0A6J1HTX7 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.9e-35
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MAS+ +  VK+GLVV  +C +I G   +EAAVTCNQVVSDL  C+ YVTGGG PS+TCC 
Sbjct: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGAPSATCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV+ LN +A T  DRQAVC CL+S+V GV YN Q +ANAAALP++CGVKLPY I+P ++C
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPARCGVKLPYKIDPRIDC 120

Query: 121 N 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Lsi01G016160 vs. ExPASy TrEMBL
Match: A0A6J1EBM4 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111432531 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.9e-35
Identity = 76/121 (62.81%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MAS+ +  VK+GLVV  +C +I G   +EAAVTCNQVVSDL  C+ YVTGGG PS+TCC 
Sbjct: 1   MASSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV+ LN +A T  DRQAVC CL+S+V GV YN Q +ANAAALP+KCGVKLPY I+P  +C
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDC 120

Query: 121 N 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Lsi01G016160 vs. NCBI nr
Match: XP_004151695.1 (non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN54448.1 hypothetical protein Csa_012253 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 93/121 (76.86%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MASNLITI+KLGL VTFL AVI G VTTEA V+CNQV+++L PC+ YVTGGG PSS CC 
Sbjct: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV+QL+  A+TTPDRQAVCRCLKS+V+GVKYN QNVANAAALP+KCGV LPY+INPNV+C
Sbjct: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of Lsi01G016160 vs. NCBI nr
Match: XP_038883886.1 (non-specific lipid-transfer protein 1-like [Benincasa hispida])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 92/121 (76.03%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MASNLI  VKLGL++TFLC VI G+V TEA VTCNQV+S+L+PC+Q+VTGGG PS  CC 
Sbjct: 1   MASNLIGNVKLGLIITFLCTVIGGRVMTEAVVTCNQVISNLNPCVQFVTGGGAPSGNCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV QL A+AQTTPDRQAVCRCLKSVV+GV+Y+ +NVANAAALPSKCGV+LPYAI+PNV+C
Sbjct: 61  GVRQLFALAQTTPDRQAVCRCLKSVVNGVRYSGKNVANAAALPSKCGVQLPYAIDPNVDC 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of Lsi01G016160 vs. NCBI nr
Match: KAA0025399.1 (non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa] >TYK09774.1 non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 8.5e-44
Identity = 93/121 (76.86%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MASNLITI+KLGL VT L AVI G VTTEA VTCNQVVS+LSPCI YVTGGG PS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV QLN  AQTTPDRQ VCRCLKS+++GV YN QNVANAAALP+KCGV LPY INPN +C
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 N 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Lsi01G016160 vs. NCBI nr
Match: XP_008463259.1 (PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 8.5e-44
Identity = 93/121 (76.86%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MASNLITI+KLGL VT L AVI G VTTEA VTCNQVVS+LSPCI YVTGGG PS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV QLN  AQTTPDRQ VCRCLKS+++GV YN QNVANAAALP+KCGV LPY INPN +C
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 121 N 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Lsi01G016160 vs. NCBI nr
Match: XP_023518220.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 6.5e-36
Identity = 78/121 (64.46%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MASNLITIVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCY 60
           MASN +  VK+GLVV  +C +I G   +EAAVTCNQVVSDL  C+ YVTGGG PS+TCC 
Sbjct: 1   MASNGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 61  GVEQLNAVAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 120
           GV+ LN +A T  DRQAVC CL+S+V GV YN Q +ANAAALPSKCGVKLPY I+P ++C
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPSKCGVKLPYKIDPRIDC 120

Query: 121 N 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Lsi01G016160 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-24
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 29  EAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNAVAQTTPDRQAVCRCLKSVVDG 88
           EAAV+CN V++DL PC+ YVT GG   + CC G+  L + AQT+ DRQ VCRC+KS + G
Sbjct: 18  EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGG 77

Query: 89  VKYNDQNVANAAALPSKCGVKLPYAINPNVNCNA 123
           +  + + + NA  LPSKCGV LPY  +P+ +C++
Sbjct: 78  LTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDS 111

[Close]

BLAST of Lsi01G016160 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-24
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 29  EAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNAVAQTTPDRQAVCRCLKSVVDG 88
           EAAV+CN V++DL PC+ YVT GG   + CC G+  L + AQT+ DRQ VCRC+KS + G
Sbjct: 18  EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGG 77

Query: 89  VKYNDQNVANAAALPSKCGVKLPYAINPNVNCNA 123
           +  + + + NA  LPSKCGV LPY  +P+ +C++
Sbjct: 78  LTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDS 111

[Close]

BLAST of Lsi01G016160 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 3.9e-23
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 14  VVTFLCAVISGQVT--TEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNAVAQT 73
           VV  LC +++      +EAA++CN V ++L PC+ YV  GG    +CC G+  L+  A +
Sbjct: 4   VVLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATS 63

Query: 74  TPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNCNA 123
             D+Q VCRC+KSVV  V Y+   +  AAALP KCGVKLPY I+P+ NCN+
Sbjct: 64  ASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNS 114

[Close]

BLAST of Lsi01G016160 vs. TAIR 10
Match: AT5G59310.1 (lipid transfer protein 4 )

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-22
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 17  FLCAVISGQV--TTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNAVAQTTPD 76
           F C V++  +  + +AA+TC  V S LSPC+ Y++ GGV    CC GV++LN +AQTTPD
Sbjct: 8   FTCFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPD 67

Query: 77  RQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 121
           RQ  CRCL+S   GV     N + A+ LP KCGV +PY I+ + NC
Sbjct: 68  RQQACRCLQSAAKGV-----NPSLASGLPGKCGVSIPYPISTSTNC 108

[Close]

BLAST of Lsi01G016160 vs. TAIR 10
Match: AT2G38540.1 (lipid transfer protein 1 )

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-20
Identity = 45/113 (39.82%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 8   IVKLGLVVTFLCAVISGQVTTEAAVTCNQVVSDLSPCIQYVTGGGVPSSTCCYGVEQLNA 67
           ++KL  ++   C +++G +T+ AA++C  V S+L+ CI YV  GGV    CC GV+ LN+
Sbjct: 4   VMKLACLL-LACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNS 63

Query: 68  VAQTTPDRQAVCRCLKSVVDGVKYNDQNVANAAALPSKCGVKLPYAINPNVNC 121
           +A+TTPDRQ  C C++     +  +  N   AA +P  CGV +PY I+ + NC
Sbjct: 64  IAKTTPDRQQACNCIQGAARALG-SGLNAGRAAGIPKACGVNIPYKISTSTNC 114

The following BLAST results are available for this feature:

BLAST of Lsi01G016160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43019	1.8e-25	46.09	Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1	[more]
A0AT29	1.6e-24	51.33	Non-specific lipid-transfer protein 2 OS=Lens culinaris OX=3864 PE=1 SV=1	[more]
A0AT32	1.6e-24	51.33	Non-specific lipid-transfer protein 6 OS=Lens culinaris OX=3864 PE=1 SV=1	[more]
A0AT31	4.5e-24	48.67	Non-specific lipid-transfer protein 5 OS=Lens culinaris OX=3864 PE=3 SV=1	[more]
A0AT33	7.7e-24	51.85	Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris OX=3864 PE=1 ...	[more]

BLAST of Lsi01G016160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY77	9.7e-46	76.86	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 P...	[more]
A0A5D3CEZ6	4.1e-44	76.86	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CIS8	4.1e-44	76.86	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3...	[more]
A0A6J1HTX7	5.9e-35	61.98	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 ...	[more]
A0A6J1EBM4	5.9e-35	62.81	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11143253...	[more]

BLAST of Lsi01G016160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151695.1	2.0e-45	76.86	non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN54448.1 hypothetical...	[more]
XP_038883886.1	2.0e-45	76.03	non-specific lipid-transfer protein 1-like [Benincasa hispida]	[more]
KAA0025399.1	8.5e-44	76.86	non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa] >TYK09774....	[more]
XP_008463259.1	8.5e-44	76.86	PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo]	[more]
XP_023518220.1	6.5e-36	64.46	non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G016160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08770.1	3.6e-24	50.00	lipid transfer protein 6	[more]
AT3G08770.2	3.6e-24	50.00	lipid transfer protein 6	[more]
AT5G01870.1	3.9e-23	46.85	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G59310.1	2.0e-22	48.11	lipid transfer protein 4	[more]
AT2G38540.1	4.1e-20	39.82	lipid transfer protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 33..49 score: 47.24 coord: 74..89 score: 45.38 coord: 53..67 score: 42.15 coord: 111..122 score: 41.03 coord: 93..110 score: 44.1
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 7..121
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 34..120 e-value: 7.8E-15 score: 65.3
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 34..118 e-value: 9.9E-10 score: 38.7
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 32..122 e-value: 2.3E-28 score: 100.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 32..121
None	No IPR available	PANTHER	PTHR33076:SF50	NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED	coord: 7..121
None	No IPR available	CDD	cd01960	nsLTP1	coord: 32..121 e-value: 1.16876E-33 score: 110.517

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G016160.1	Lsi01G016160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding