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Lsi01G015720 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGCCAAAAAAATCCCTCATCCGACAACTTTAGAAAAATACGTGTAACCTGAAAAGAGCTTCCAATTTTCTAATCGTCACTAGAATCAGACGCTCGTCCATTCCTCTGCTTATACATACAAGAGAAGAAAGTCCTATAATTTCAAATTGAAACCCTTACTGAAACAACAAATCTGAAAACAATGGAAGACGGAATTGCAGAGGAATATCCTCAGAATCTCATTCAACAACGAGAAGAAGAAGAAGAACACGAAAAATCGAGTGGGTTTTTGAGGAATTTCATTTCTAACATGGTGTCAGCAGAGGGAAGTGAAGAAAAGAAAGCAGAGCAAGAAGATGGAGAAAAGTCAAGTGGGTTTCTGAAGAATTTGATTTCGAACATGGTCTCGGCAGAGGAGAGTGAAGAAAAAACAGAAGAAGAAGAAGAAGAAAAAGGAAAGACAAATGGGTTTCTGAAGAATTTCATCTCGAATATGGTCTCTGGAGAGGAAAGTGAAGAAAAAAAAGAGGAAGAAGAAGAAGAAGAAGGAAAGGAAAATGGGTTTCTGAAGAATTTCATGTCGAACAGAGTACATGCAGAGGAGAGTAGAGAAAAAACAGAGGAAGTAGAAGGAAAAGAAAAAGAAGAAAAGGAAGGTGGGTTTCTGAGGAATTTCATTTCGAACATGGTGTCCGCAGAGGGAAATGAAGATGAAGAAAAAGAGAAGGAAGATGGTGGGATTGTAAACAATGTAATGGTTTCTCAGAAAACAGGGGAAGGGGAAATAGACAAAAGCGGCGGTTCTGAGTCGGTTGAAGAAAAGGGCGGCGGCGGTGGTGGAGGAGGAGGAATTATAGAAAACATTGTCTCCCACTTGCCTGCTTCACTTCAAGGTATGTAATTTCATAAAATAGAAAATTTTAATTGATTGAATTTGAGAGATGAACAGAGTAATGAGAAATCTGAAGTTGTTGTATGTTTTGTGGTGAATGAAACAGGTGATGCAGTGACAACAACAGATGAAGCTGCAATTCTGATTCACTCCATTATCCATGAATGAAAATTTCTTGGTTTTTTATTTTCTTTTGTTTTGTGTTCATAAGTTTTGTTTTCCCATGTAAATTTAAGTTGTTGTGTTTGATTGTTTGGGATCTGTACTCTTCTTTTTTGTTAAACAGAGTACATAAAAAATAAAGGGAGGGATAAGAGAAGGAAGATCCTGATTATCAGGATATTTGACTTTCAAGTTGCAGTTATGTTCAACTTTGAATCCTTATTATTGACAATGGATTCGATGTTTTGTTAGATGTAACAATTTAACAATGGGAAATTTTTCTCATGCAATGAAGGTTTTATTCCATTACTTTTT CGCCAAAAAAATCCCTCATCCGACAACTTTAGAAAAATACGTGTAACCTGAAAAGAGCTTCCAATTTTCTAATCGTCACTAGAATCAGACGCTCGTCCATTCCTCTGCTTATACATACAAGAGAAGAAAGTCCTATAATTTCAAATTGAAACCCTTACTGAAACAACAAATCTGAAAACAATGGAAGACGGAATTGCAGAGGAATATCCTCAGAATCTCATTCAACAACGAGAAGAAGAAGAAGAACACGAAAAATCGAGTGGGTTTTTGAGGAATTTCATTTCTAACATGGTGTCAGCAGAGGGAAGTGAAGAAAAGAAAGCAGAGCAAGAAGATGGAGAAAAGTCAAGTGGGTTTCTGAAGAATTTGATTTCGAACATGGTCTCGGCAGAGGAGAGTGAAGAAAAAACAGAAGAAGAAGAAGAAGAAAAAGGAAAGACAAATGGGTTTCTGAAGAATTTCATCTCGAATATGGTCTCTGGAGAGGAAAGTGAAGAAAAAAAAGAGGAAGAAGAAGAAGAAGAAGGAAAGGAAAATGGGTTTCTGAAGAATTTCATGTCGAACAGAGTACATGCAGAGGAGAGTAGAGAAAAAACAGAGGAAGTAGAAGGAAAAGAAAAAGAAGAAAAGGAAGGTGGGTTTCTGAGGAATTTCATTTCGAACATGGTGTCCGCAGAGGGAAATGAAGATGAAGAAAAAGAGAAGGAAGATGGTGGGATTGTAAACAATGTAATGGTTTCTCAGAAAACAGGGGAAGGGGAAATAGACAAAAGCGGCGGTTCTGAGTCGGTTGAAGAAAAGGGCGGCGGCGGTGGTGGAGGAGGAGGAATTATAGAAAACATTGTCTCCCACTTGCCTGCTTCACTTCAAGGTGATGCAGTGACAACAACAGATGAAGCTGCAATTCTGATTCACTCCATTATCCATGAATGAAAATTTCTTGGTTTTTTATTTTCTTTTGTTTTGTGTTCATAAGTTTTGTTTTCCCATGTAAATTTAAGTTGTTGTGTTTGATTGTTTGGGATCTGTACTCTTCTTTTTTGTTAAACAGAGTACATAAAAAATAAAGGGAGGGATAAGAGAAGGAAGATCCTGATTATCAGGATATTTGACTTTCAAGTTGCAGTTATGTTCAACTTTGAATCCTTATTATTGACAATGGATTCGATGTTTTGTTAGATGTAACAATTTAACAATGGGAAATTTTTCTCATGCAATGAAGGTTTTATTCCATTACTTTTT ATGGAAGACGGAATTGCAGAGGAATATCCTCAGAATCTCATTCAACAACGAGAAGAAGAAGAAGAACACGAAAAATCGAGTGGGTTTTTGAGGAATTTCATTTCTAACATGGTGTCAGCAGAGGGAAGTGAAGAAAAGAAAGCAGAGCAAGAAGATGGAGAAAAGTCAAGTGGGTTTCTGAAGAATTTGATTTCGAACATGGTCTCGGCAGAGGAGAGTGAAGAAAAAACAGAAGAAGAAGAAGAAGAAAAAGGAAAGACAAATGGGTTTCTGAAGAATTTCATCTCGAATATGGTCTCTGGAGAGGAAAGTGAAGAAAAAAAAGAGGAAGAAGAAGAAGAAGAAGGAAAGGAAAATGGGTTTCTGAAGAATTTCATGTCGAACAGAGTACATGCAGAGGAGAGTAGAGAAAAAACAGAGGAAGTAGAAGGAAAAGAAAAAGAAGAAAAGGAAGGTGGGTTTCTGAGGAATTTCATTTCGAACATGGTGTCCGCAGAGGGAAATGAAGATGAAGAAAAAGAGAAGGAAGATGGTGGGATTGTAAACAATGTAATGGTTTCTCAGAAAACAGGGGAAGGGGAAATAGACAAAAGCGGCGGTTCTGAGTCGGTTGAAGAAAAGGGCGGCGGCGGTGGTGGAGGAGGAGGAATTATAGAAAACATTGTCTCCCACTTGCCTGCTTCACTTCAAGGTGATGCAGTGACAACAACAGATGAAGCTGCAATTCTGATTCACTCCATTATCCATGAATGA MEDGIAEEYPQNLIQQREEEEEHEKSSGFLRNFISNMVSAEGSEEKKAEQEDGEKSSGFLKNLISNMVSAEESEEKTEEEEEEKGKTNGFLKNFISNMVSGEESEEKKEEEEEEEGKENGFLKNFMSNRVHAEESREKTEEVEGKEKEEKEGGFLRNFISNMVSAEGNEDEEKEKEDGGIVNNVMVSQKTGEGEIDKSGGSESVEEKGGGGGGGGGIIENIVSHLPASLQGDAVTTTDEAAILIHSIIHE Homology
BLAST of Lsi01G015720 vs. ExPASy Swiss-Prot
Match: Q8T6B4 (ABC transporter F family member 4 OS=Dictyostelium discoideum OX=44689 GN=abcF4 PE=3 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 3.3e-05 Identity = 57/188 (30.32%), Postives = 88/188 (46.81%), Query Frame = 0
BLAST of Lsi01G015720 vs. ExPASy Swiss-Prot
Match: E9Q743 (Cilia- and flagella-associated protein 251 OS=Mus musculus OX=10090 GN=Cfap251 PE=1 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 6.3e-04 Identity = 60/176 (34.09%), Postives = 80/176 (45.45%), Query Frame = 0
BLAST of Lsi01G015720 vs. ExPASy TrEMBL
Match: A0A5D3CID7 (Cyclin-dependent kinase 11B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00140 PE=4 SV=1) HSP 1 Score: 329.3 bits (843), Expect = 1.4e-86 Identity = 197/256 (76.95%), Postives = 216/256 (84.38%), Query Frame = 0
BLAST of Lsi01G015720 vs. ExPASy TrEMBL
Match: A0A0A0L1D7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312840 PE=4 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 2.5e-80 Identity = 187/259 (72.20%), Postives = 215/259 (83.01%), Query Frame = 0
BLAST of Lsi01G015720 vs. ExPASy TrEMBL
Match: A0A5A7T838 (Cyclin-dependent kinase 11B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00200 PE=4 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 5.4e-67 Identity = 168/256 (65.62%), Postives = 184/256 (71.88%), Query Frame = 0
BLAST of Lsi01G015720 vs. ExPASy TrEMBL
Match: A0A1S3CMH8 (cyclin-dependent kinase 11B-like OS=Cucumis melo OX=3656 GN=LOC103502155 PE=4 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 5.4e-67 Identity = 168/256 (65.62%), Postives = 184/256 (71.88%), Query Frame = 0
BLAST of Lsi01G015720 vs. ExPASy TrEMBL
Match: A0A6J1GER9 (cilia- and flagella-associated protein 251 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453519 PE=4 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 4.5e-45 Identity = 140/256 (54.69%), Postives = 149/256 (58.20%), Query Frame = 0
BLAST of Lsi01G015720 vs. NCBI nr
Match: XP_038883081.1 (ABC transporter F family member 4 [Benincasa hispida]) HSP 1 Score: 331.3 bits (848), Expect = 7.4e-87 Identity = 212/308 (68.83%), Postives = 226/308 (73.38%), Query Frame = 0
BLAST of Lsi01G015720 vs. NCBI nr
Match: TYK10934.1 (cyclin-dependent kinase 11B-like [Cucumis melo var. makuwa]) HSP 1 Score: 329.3 bits (843), Expect = 2.8e-86 Identity = 197/256 (76.95%), Postives = 216/256 (84.38%), Query Frame = 0
BLAST of Lsi01G015720 vs. NCBI nr
Match: XP_004148627.1 (cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN54402.1 hypothetical protein Csa_018150 [Cucumis sativus]) HSP 1 Score: 308.5 bits (789), Expect = 5.2e-80 Identity = 187/259 (72.20%), Postives = 215/259 (83.01%), Query Frame = 0
BLAST of Lsi01G015720 vs. NCBI nr
Match: XP_008464224.1 (PREDICTED: cyclin-dependent kinase 11B-like [Cucumis melo] >KAA0037727.1 cyclin-dependent kinase 11B-like [Cucumis melo var. makuwa]) HSP 1 Score: 264.2 bits (674), Expect = 1.1e-66 Identity = 168/256 (65.62%), Postives = 184/256 (71.88%), Query Frame = 0
BLAST of Lsi01G015720 vs. NCBI nr
Match: KAG7033757.1 (hypothetical protein SDJN02_03482, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 195.7 bits (496), Expect = 4.9e-46 Identity = 139/256 (54.30%), Postives = 148/256 (57.81%), Query Frame = 0
BLAST of Lsi01G015720 vs. TAIR 10
Match: AT3G51750.1 (unknown protein; Has 15 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 2.9e-04 Identity = 45/147 (30.61%), Postives = 64/147 (43.54%), Query Frame = 0
BLAST of Lsi01G015720 vs. TAIR 10
Match: AT3G51750.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 2.9e-04 Identity = 45/147 (30.61%), Postives = 64/147 (43.54%), Query Frame = 0
BLAST of Lsi01G015720 vs. TAIR 10
Match: AT3G51750.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages. ) HSP 1 Score: 43.5 bits (101), Expect = 2.9e-04 Identity = 45/147 (30.61%), Postives = 64/147 (43.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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