Lsi01G015370 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G015370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Xyloglucan endotransglucosylase/hydrolase
Location	chr01: 13477162 .. 13478869 (-)
RNA-Seq Expression	Lsi01G015370
Synteny	Lsi01G015370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGGTCTAAAATGAGCAAGCTCTTTGTTTGTCTTGTTATTGTGTTTATAAGCATTTTGAAGAAGGATGTTGTTAGCCAACAAGTTAAGTTCGATGAAAATTATGTTGTTACATCTAGCCAAGATCATGTTGTGCGGTTAAGAGGTGGAGCAGAAGTTCAACTTTCTCTCGATCAAGCAGGAGGTCTGATCTTTAATTTTATTTTAAATGTTTAAATAAATTTCTTATAATTTGGTTAAATCTCTTAAAATGTCTTTATTGTTATCGATGTTTGCAATTTCTTTTAGGCTAAATTATAACGAATATTTTTAAATTTGCTTATTTATTTAAAAAATATCTCTATACTTTCAAAAGTTTCGATACTACTCTTTAATTTTCATAAATGTTTCACAACTACTCTTTGAGTATAAATTCTTTAGAATTATGAACAAATATCAGGATTTAGAACTGTGTGGTGATGACCTAAAATGATGCGGTGGTTTAAATTTTTGTTTTATGTCGCCTACTATGCTATTTTATATCTTACTTTTCATCCAAATTATAAAGAATTTCTACTTCAATGGTATTTTTGAAACGTTTGTGAAAGTTTAAAGGTAATATTGCAACTTTTAAAAGTACAAGGGTATGTTTGAAACAAATGACAATGTTCAAGGGTATTTAATACAATACCTCTTTCTTAAGGTTAAATTATAAATTTTGGTCTCTATAGTTTGAAGAAAGTTAGAATTTAGTCTCTATGCTTTGATAAAATCAAATAATTAAGGACCTATGTTTTGGAAACCATACTACTATAGGGATTAAATTTTAACTTCCAAATCATAGGGACCAAATTTGAAATTTAACCTTTCTTAAAAAAAAAAAAAAAAAGCCGCTCGTTTTCAAAGCTCCCGTCCATAACCATTTGGTTTTTTCATTTTAGTTTTTGAAAATTACGCTTATAAACACTTCTTCTATCTCTAAAATTTTTGTTTTTTTTTTATTTACTTTCTACCAATATTTTCAAAATTCAAATCAAATTTTGAAGACTAAAAAAAAAAAAAAATTTACTTTTAGAATTTGGATAAGAATTTAACTCTTGTATTTAAAAAGTATGCAATCCATCGTAAGAAAATAAAAGAAAATAAGCTTAAATCGAAATGGTTTCAACCTCCCTTCCTCCCACTCTCTCAATTTCTAAATGAATAGCCATACATGTTTTATTTGACTACTTGCCATGATTTATACTATACAAATATATTTATTATTTAATTATTAATTAGTTTGATTGTTACCAAATGAAGATGGCCAAATGACCCTTTTCTTTCAATAAAGAATGTCAAATGATATGATTTAATTTATATTATGATTAAATATTTCATCAACTCGCATGATTCAATAATTATTAAAAAAATGTTAGTTTAACATTTATTTTGTGATATCAAAGATCTTTTCTCTACTTCTCTTGATATTGTGATCATCTCAAAAGATTATTTAATTTTGTTTGGTTTTTTTAAGTAAATTTTTTTGACAAAAAAAATAAAATTAAAAAAGAGGAAGAATAAAATAGTTGAATATGACTTAAATCACCATTACGAGTATATAATTAAATGTGTGTTATTTTGGTGGCATTAACAAAACAAAGGAGCTGCTTTCCAGTCAAAGGTTGGGTATCCATCGGGATATTTTGAGATGAAAATAAAGCTACCATCCAAGCATTCTCCTGGA

mRNA sequence

ATGAAAGGGTCTAAAATGAGCAAGCTCTTTGTTTGTCTTGTTATTGTGTTTATAAGCATTTTGAAGAAGGATGTTGTTAGCCAACAAGTTAAGTTCGATGAAAATTATGTTGTTACATCTAGCCAAGATCATGTTGTGCGGTTAAGAGGTGGAGCAGAAGTTCAACTTTCTCTCGATCAAGCAGGAGGAGCTGCTTTCCAGTCAAAGGTTGGGTATCCATCGGGATATTTTGAGATGAAAATAAAGCTACCATCCAAGCATTCTCCTGGA

Coding sequence (CDS)

ATGAAAGGGTCTAAAATGAGCAAGCTCTTTGTTTGTCTTGTTATTGTGTTTATAAGCATTTTGAAGAAGGATGTTGTTAGCCAACAAGTTAAGTTCGATGAAAATTATGTTGTTACATCTAGCCAAGATCATGTTGTGCGGTTAAGAGGTGGAGCAGAAGTTCAACTTTCTCTCGATCAAGCAGGAGGAGCTGCTTTCCAGTCAAAGGTTGGGTATCCATCGGGATATTTTGAGATGAAAATAAAGCTACCATCCAAGCATTCTCCTGGA

Protein sequence

MKGSKMSKLFVCLVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGYPSGYFEMKIKLPSKHSPG

Homology

[Close]

BLAST of Lsi01G015370 vs. ExPASy Swiss-Prot
Match: Q9SV60 (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana OX=3702 GN=XTH2 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 30 VKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGYPSGYFEMKIKLPSKHSP 89
          + FD NYVVT  QDH+++L  G EVQLS+D + G+ F+SK  Y SG+F+M+IKLP + S 
Sbjct: 30 IDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSA 89

Query: 90 G 91
          G
Sbjct: 90 G 90

[Close]

BLAST of Lsi01G015370 vs. ExPASy Swiss-Prot
Match: Q9SV61 (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana OX=3702 GN=XTH1 PE=3 SV=3)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-11
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 29 QVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGYPSGYFEMKIKLPSKHS 88
          +V FD+NYVVT  Q++V++L  G EVQLSLD + G+ F+SK  Y SG+F+++IK+P K +
Sbjct: 36 KVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDT 95

Query: 89 PG 91
           G
Sbjct: 96 SG 97

[Close]

BLAST of Lsi01G015370 vs. ExPASy Swiss-Prot
Match: Q9LJR7 (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana OX=3702 GN=XTH3 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.7e-10
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 26 VSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGYPSGYFEMKIKLPS 85
          + + V F +NY+VT  Q HV  L  G EV L +DQ+ G  F+SK  Y SG FEM+IK+PS
Sbjct: 29 IEKFVTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPS 88

Query: 86 KHSPG 91
           ++ G
Sbjct: 89 GNTGG 93

[Close]

BLAST of Lsi01G015370 vs. ExPASy Swiss-Prot
Match: Q41542 (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum OX=4565 GN=XTH PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-08
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 1  MKGSKMSKLFVCLVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQ 60
          MK +  + L V   ++   +         V FD+NYV T +QDH+  + GG EVQLSLD+
Sbjct: 1  MKATAGALLAVVAAVLLRGVAAAPRKPVDVPFDKNYVPTWAQDHIHYVNGGREVQLSLDK 60

Query: 61 AGGAAFQSKVGYPSGYFEMKIKLPSKHSPG 91
            G  FQ++  Y  G+F M IKL    S G
Sbjct: 61 TTGTGFQTRGSYLFGHFSMHIKLVGGDSAG 90

[Close]

BLAST of Lsi01G015370 vs. ExPASy Swiss-Prot
Match: Q8LER3 (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana OX=3702 GN=XTH7 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 9  LFVCLVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQS 68
          +F  L +   + L + V+S+  KF++++ +  S  H+ ++ GG  +QL LD + G  F S
Sbjct: 11 VFYTLSLCLFAALYQPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFAS 70

Query: 69 KVGYPSGYFEMKIKLPSKHSPG 91
          K  Y  G   MKIKL    S G
Sbjct: 71 KKQYLFGRVSMKIKLIPGDSAG 92

[Close]

BLAST of Lsi01G015370 vs. ExPASy TrEMBL
Match: N0DX41 (Putative xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus OX=3659 GN=xth26 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MKGSKMSKLFVCLVIVFISILKKDVVSQQ-VKFDENYVVTSSQDHVVRLRGGAEVQLSLD 60
          MKGS    LF+CLV+VFIS LKKDVVSQ+ + FD+NYVVTSSQDHV+RL GG E QL+LD
Sbjct: 1  MKGS----LFLCLVLVFISCLKKDVVSQKYLNFDKNYVVTSSQDHVLRLNGGTEAQLTLD 60

Query: 61 QAGGAAFQSKVGYPSGYFEMKIKLPSKHSPG 91
          QAGG AFQS + Y SGYFEM+IKLPS HSPG
Sbjct: 61 QAGGGAFQSLLKYGSGYFEMQIKLPSNHSPG 87

[Close]

BLAST of Lsi01G015370 vs. ExPASy TrEMBL
Match: A0A0A0KXI7 (GH16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G308600 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.0e-25
Identity = 66/91 (72.53%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MKGSKMSKLFVCLVIVFISILKKDVVSQQ-VKFDENYVVTSSQDHVVRLRGGAEVQLSLD 60
          MKGS    LF+CLV+VFIS LKKDVVSQ+ + FD+NYVV SSQDHV+RL GG E QL+LD
Sbjct: 1  MKGS----LFLCLVLVFISCLKKDVVSQKYLNFDKNYVVMSSQDHVLRLNGGTEAQLTLD 60

Query: 61 QAGGAAFQSKVGYPSGYFEMKIKLPSKHSPG 91
          QAGG AFQS + Y SGYFEM+IKLPS HSPG
Sbjct: 61 QAGGGAFQSLLKYGSGYFEMQIKLPSNHSPG 87

[Close]

BLAST of Lsi01G015370 vs. ExPASy TrEMBL
Match: A0A6J1HBJ0 (xyloglucan endotransglucosylase/hydrolase protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111461864 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.8e-18
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 13 LVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGY 72
          LV++ +S LK  VV +++ FDENY VT SQDH VRLR G+EVQLSLDQA G  F+SK+ Y
Sbjct: 14 LVLMIMSCLKNRVVGEELTFDENYFVTYSQDHFVRLRDGSEVQLSLDQASGTCFKSKLEY 73

Query: 73 PSGYFEMKIKLPSKHSPG 91
           SGYF+MK+KLPS+ SPG
Sbjct: 74 GSGYFQMKLKLPSRASPG 91

[Close]

BLAST of Lsi01G015370 vs. ExPASy TrEMBL
Match: A0A0A0M3A1 (GH16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G662750 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 44/78 (56.41%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 13 LVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGY 72
          +V+V I+ L+ +VV ++  FD+NY+VT  QDH +R  GGA+VQLSLD A G  F+SK+GY
Sbjct: 15 IVVVIINCLRNEVVCEEANFDQNYIVTYGQDHFLRSEGGAQVQLSLDLASGTGFKSKIGY 74

Query: 73 PSGYFEMKIKLPSKHSPG 91
           SG+F +K+KLPS+HSPG
Sbjct: 75 GSGHFHIKLKLPSRHSPG 92

[Close]

BLAST of Lsi01G015370 vs. ExPASy TrEMBL
Match: A0A6J1JA91 (xyloglucan endotransglucosylase/hydrolase protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111484959 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.0e-17
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 13 LVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGY 72
          LV++ +  +K  VV +++ FDENY +T SQDH VRL+GG+EVQLSLDQA G  F+SK+ Y
Sbjct: 14 LVLMIMIRVKNRVVGEELTFDENYFITYSQDHFVRLQGGSEVQLSLDQASGTCFKSKLEY 73

Query: 73 PSGYFEMKIKLPSKHSPG 91
           SGYF MK+KLPS+ SPG
Sbjct: 74 GSGYFPMKLKLPSRASPG 91

[Close]

BLAST of Lsi01G015370 vs. NCBI nr
Match: CCH26636.1 (putative xyloglucan endotransglucosylase/hydrolase [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-25
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MKGSKMSKLFVCLVIVFISILKKDVVSQQ-VKFDENYVVTSSQDHVVRLRGGAEVQLSLD 60
          MKGS    LF+CLV+VFIS LKKDVVSQ+ + FD+NYVVTSSQDHV+RL GG E QL+LD
Sbjct: 1  MKGS----LFLCLVLVFISCLKKDVVSQKYLNFDKNYVVTSSQDHVLRLNGGTEAQLTLD 60

Query: 61 QAGGAAFQSKVGYPSGYFEMKIKLPSKHSPG 91
          QAGG AFQS + Y SGYFEM+IKLPS HSPG
Sbjct: 61 QAGGGAFQSLLKYGSGYFEMQIKLPSNHSPG 87

[Close]

BLAST of Lsi01G015370 vs. NCBI nr
Match: XP_031740431.1 (xyloglucan endotransglucosylase/hydrolase protein 2-like [Cucumis sativus] >KGN54635.2 hypothetical protein Csa_017891 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-25
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MKGSKMSKLFVCLVIVFISILKKDVVSQQ-VKFDENYVVTSSQDHVVRLRGGAEVQLSLD 60
          MKGS    LF+CLV+VFIS LKKDVVSQ+ + FD+NYVVTSSQDHV+RL GG E QL+LD
Sbjct: 1  MKGS----LFLCLVLVFISCLKKDVVSQKYLNFDKNYVVTSSQDHVLRLNGGTEAQLTLD 60

Query: 61 QAGGAAFQSKVGYPSGYFEMKIKLPSKHSPG 91
          QAGG AFQS + Y SGYFEM+IKLPS HSPG
Sbjct: 61 QAGGGAFQSLLKYGSGYFEMQIKLPSNHSPG 87

[Close]

BLAST of Lsi01G015370 vs. NCBI nr
Match: XP_022961348.1 (xyloglucan endotransglucosylase/hydrolase protein 2-like [Cucurbita moschata])

HSP 1 Score: 100.9 bits (250), Expect = 5.9e-18
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 13 LVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGY 72
          LV++ +S LK  VV +++ FDENY VT SQDH VRLR G+EVQLSLDQA G  F+SK+ Y
Sbjct: 14 LVLMIMSCLKNRVVGEELTFDENYFVTYSQDHFVRLRDGSEVQLSLDQASGTCFKSKLEY 73

Query: 73 PSGYFEMKIKLPSKHSPG 91
           SGYF+MK+KLPS+ SPG
Sbjct: 74 GSGYFQMKLKLPSRASPG 91

[Close]

BLAST of Lsi01G015370 vs. NCBI nr
Match: KAE8653589.1 (hypothetical protein Csa_007107 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 44/78 (56.41%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 13 LVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGY 72
          +V+V I+ L+ +VV ++  FD+NY+VT  QDH +R  GGA+VQLSLD A G  F+SK+GY
Sbjct: 15 IVVVIINCLRNEVVCEEANFDQNYIVTYGQDHFLRSEGGAQVQLSLDLASGTGFKSKIGY 74

Query: 73 PSGYFEMKIKLPSKHSPG 91
           SG+F +K+KLPS+HSPG
Sbjct: 75 GSGHFHIKLKLPSRHSPG 92

[Close]

BLAST of Lsi01G015370 vs. NCBI nr
Match: XP_022987397.1 (xyloglucan endotransglucosylase/hydrolase protein 2-like [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 13 LVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGY 72
          LV++ +  +K  VV +++ FDENY +T SQDH VRL+GG+EVQLSLDQA G  F+SK+ Y
Sbjct: 14 LVLMIMIRVKNRVVGEELTFDENYFITYSQDHFVRLQGGSEVQLSLDQASGTCFKSKLEY 73

Query: 73 PSGYFEMKIKLPSKHSPG 91
           SGYF MK+KLPS+ SPG
Sbjct: 74 GSGYFPMKLKLPSRASPG 91

[Close]

BLAST of Lsi01G015370 vs. TAIR 10
Match: AT4G13090.1 (xyloglucan endotransglucosylase/hydrolase 2 )

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-13
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 30 VKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGYPSGYFEMKIKLPSKHSP 89
          + FD NYVVT  QDH+++L  G EVQLS+D + G+ F+SK  Y SG+F+M+IKLP + S 
Sbjct: 30 IDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSA 89

Query: 90 G 91
          G
Sbjct: 90 G 90

[Close]

BLAST of Lsi01G015370 vs. TAIR 10
Match: AT4G13080.1 (xyloglucan endotransglucosylase/hydrolase 1 )

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 29 QVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGYPSGYFEMKIKLPSKHS 88
          +V FD+NYVVT  Q++V++L  G EVQLSLD + G+ F+SK  Y SG+F+++IK+P K +
Sbjct: 33 KVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDT 92

Query: 89 PG 91
           G
Sbjct: 93 SG 94

[Close]

BLAST of Lsi01G015370 vs. TAIR 10
Match: AT3G25050.1 (xyloglucan endotransglucosylase/hydrolase 3 )

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-11
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 26 VSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQSKVGYPSGYFEMKIKLPS 85
          + + V F +NY+VT  Q HV  L  G EV L +DQ+ G  F+SK  Y SG FEM+IK+PS
Sbjct: 29 IEKFVTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPS 88

Query: 86 KHSPG 91
           ++ G
Sbjct: 89 GNTGG 93

[Close]

BLAST of Lsi01G015370 vs. TAIR 10
Match: AT4G37800.1 (xyloglucan endotransglucosylase/hydrolase 7 )

HSP 1 Score: 50.4 bits (119), Expect = 8.5e-07
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 9  LFVCLVIVFISILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSLDQAGGAAFQS 68
          +F  L +   + L + V+S+  KF++++ +  S  H+ ++ GG  +QL LD + G  F S
Sbjct: 11 VFYTLSLCLFAALYQPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFAS 70

Query: 69 KVGYPSGYFEMKIKLPSKHSPG 91
          K  Y  G   MKIKL    S G
Sbjct: 71 KKQYLFGRVSMKIKLIPGDSAG 92

[Close]

BLAST of Lsi01G015370 vs. TAIR 10
Match: AT3G48580.1 (xyloglucan endotransglucosylase/hydrolase 11 )

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 29/92 (31.52%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 1  MKGSKMSKLFVCLVIVFI--SILKKDVVSQQVKFDENYVVTSSQDHVVRLRGGAEVQLSL 60
          M+GS    L + +V+V +  +   ++  +  V +  NY  T     +V +   +E+QL+L
Sbjct: 1  MRGSDQKILLMVMVVVAVVAAAQGQEETTGFVTWGNNYYQTWGHQALV-INKTSELQLTL 60

Query: 61 DQAGGAAFQSKVGYPSGYFEMKIKLPSKHSPG 91
          D+  G+ F+S++ Y SGYF ++IK P   S G
Sbjct: 61 DKNSGSGFESQLIYGSGYFNVRIKAPQTTSTG 91

The following BLAST results are available for this feature:

BLAST of Lsi01G015370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SV60	1.7e-12	54.10	Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana OX=3...	[more]
Q9SV61	2.5e-11	51.61	Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thal...	[more]
Q9LJR7	4.7e-10	47.69	Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana OX=3...	[more]
Q41542	3.4e-08	38.89	Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum OX=4565 ...	[more]
Q8LER3	1.2e-05	34.15	Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thal...	[more]

BLAST of Lsi01G015370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
N0DX41	1.4e-25	73.63	Putative xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus OX=3659 GN...	[more]
A0A0A0KXI7	7.0e-25	72.53	GH16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G308600 PE=4 S...	[more]
A0A6J1HBJ0	2.8e-18	64.10	xyloglucan endotransglucosylase/hydrolase protein 2-like OS=Cucurbita moschata O...	[more]
A0A0A0M3A1	1.4e-17	56.41	GH16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G662750 PE=4 S...	[more]
A0A6J1JA91	7.0e-17	60.26	xyloglucan endotransglucosylase/hydrolase protein 2-like OS=Cucurbita maxima OX=...	[more]

BLAST of Lsi01G015370 vs. NCBI nr


Match Name	E-value	Identity	Description
CCH26636.1	2.9e-25	73.63	putative xyloglucan endotransglucosylase/hydrolase [Cucumis sativus]	[more]
XP_031740431.1	2.9e-25	73.63	xyloglucan endotransglucosylase/hydrolase protein 2-like [Cucumis sativus] >KGN5...	[more]
XP_022961348.1	5.9e-18	64.10	xyloglucan endotransglucosylase/hydrolase protein 2-like [Cucurbita moschata]	[more]
KAE8653589.1	2.9e-17	56.41	hypothetical protein Csa_007107 [Cucumis sativus]	[more]
XP_022987397.1	1.4e-16	60.26	xyloglucan endotransglucosylase/hydrolase protein 2-like [Cucurbita maxima]	[more]

BLAST of Lsi01G015370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13090.1	1.2e-13	54.10	xyloglucan endotransglucosylase/hydrolase 2	[more]
AT4G13080.1	1.8e-12	51.61	xyloglucan endotransglucosylase/hydrolase 1	[more]
AT3G25050.1	3.3e-11	47.69	xyloglucan endotransglucosylase/hydrolase 3	[more]
AT4G37800.1	8.5e-07	34.15	xyloglucan endotransglucosylase/hydrolase 7	[more]
AT3G48580.1	1.0e-04	31.52	xyloglucan endotransglucosylase/hydrolase 11	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000757	Glycoside hydrolase family 16	PFAM	PF00722	Glyco_hydro_16	coord: 33..85 e-value: 6.7E-5 score: 22.5
None	No IPR available	GENE3D	2.60.120.200		coord: 18..90 e-value: 3.5E-12 score: 48.2
None	No IPR available	PANTHER	PTHR31062:SF113	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	coord: 8..89
IPR044791	Beta-glucanase/XTH	PANTHER	PTHR31062	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	coord: 8..89
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 32..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G015370.1	Lsi01G015370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042546	cell wall biogenesis
biological_process	GO:0010411	xyloglucan metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0016762	xyloglucan:xyloglucosyl transferase activity