Lsi01G014810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G014810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr01: 12898272 .. 12898682 (+)
RNA-Seq Expression	Lsi01G014810
Synteny	Lsi01G014810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCATTTCTACTCTTTCTCTTCATCCTCGCCAATGCTCTTCTCAATTCAGTCTCCGTCGGAGCCGCTCCACCGCCGACCTCCGCCGAATCGCCTTCCGGAAGAAAGCTCGGGAAGCACCAGAGTACGGCAGTTGTTTTTTCGAGTCCGTCTGAAGCGCCGCGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCGAGCGGTGGAGAGAGTGGAAATGAGATTCAGTTGGAAAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGTGGCGGCGTGATTTTGGGCGGACTTGCTACTACTTTTCTGGTGGCGGTTATATGTTACATTAGAGCTACGAGGCGACAGAACTCGGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

mRNA sequence

ATGCCTCCATTTCTACTCTTTCTCTTCATCCTCGCCAATGCTCTTCTCAATTCAGTCTCCGTCGGAGCCGCTCCACCGCCGACCTCCGCCGAATCGCCTTCCGGAAGAAAGCTCGGGAAGCACCAGAGTACGGCAGTTGTTTTTTCGAGTCCGTCTGAAGCGCCGCGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCGAGCGGTGGAGAGAGTGGAAATGAGATTCAGTTGGAAAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGTGGCGGCGTGATTTTGGGCGGACTTGCTACTACTTTTCTGGTGGCGGTTATATGTTACATTAGAGCTACGAGGCGACAGAACTCGGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

Coding sequence (CDS)

ATGCCTCCATTTCTACTCTTTCTCTTCATCCTCGCCAATGCTCTTCTCAATTCAGTCTCCGTCGGAGCCGCTCCACCGCCGACCTCCGCCGAATCGCCTTCCGGAAGAAAGCTCGGGAAGCACCAGAGTACGGCAGTTGTTTTTTCGAGTCCGTCTGAAGCGCCGCGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCGAGCGGTGGAGAGAGTGGAAATGAGATTCAGTTGGAAAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGTGGCGGCGTGATTTTGGGCGGACTTGCTACTACTTTTCTGGTGGCGGTTATATGTTACATTAGAGCTACGAGGCGACAGAACTCGGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

Protein sequence

MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMKVQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQNSEVNSAFETTCRPRC

Homology

[Close]

BLAST of Lsi01G014810 vs. ExPASy TrEMBL
Match: A0A5A7TSM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001230 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.9e-46
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           +PPFL  LFI ANA  +S++  AAPPPTSAESPS RKLGKHQSTA+ FSSP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           VQGTS AASGGESGN +QL NH+HHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 64  VQGTS-AASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 123

Query: 121 NSEVNS 127
            SE+ S
Sbjct: 124 KSELGS 128

[Close]

BLAST of Lsi01G014810 vs. ExPASy TrEMBL
Match: A0A1S3BJV8 (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.9e-46
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           +PPFL  LFI ANA  +S++  AAPPPTSAESPS RKLGKHQSTA+ FSSP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           VQGTS AASGGESGN +QL NH+HHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 64  VQGTS-AASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 123

Query: 121 NSEVNS 127
            SE+ S
Sbjct: 124 KSELGS 128

[Close]

BLAST of Lsi01G014810 vs. ExPASy TrEMBL
Match: A0A0A0KXQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.3e-46
Identity = 101/126 (80.16%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           +PPFL  LFI ANAL +S++  AAPPPTSAESPS RKLGKHQSTA+ FSSP+EAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           VQGTS  ASGGESGN ++L NH+HHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ
Sbjct: 62  VQGTS-GASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 121

Query: 121 NSEVNS 127
            SE+ S
Sbjct: 122 KSELGS 126

[Close]

BLAST of Lsi01G014810 vs. ExPASy TrEMBL
Match: A0A6J1DCH7 (uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019472 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 90/133 (67.67%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSV-----GAAPPP--TSAESPSGRKLGKHQSTAVVF--SSP 60
           M  FL  LFI ANA LNSV V     GAAP P  T AE+PS RKLGKH+S A V   SSP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  SEAPRSEMKVQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVI 120
           SEAPRSEMKVQ TSAAA+ G          H +HK+ DKSIAGGGVILGGLATTFLVA+I
Sbjct: 61  SEAPRSEMKVQATSAAATNGGD------HQHHNHKASDKSIAGGGVILGGLATTFLVAII 120

Query: 121 CYIRATRRQNSEV 125
           CYIRATRR NSEV
Sbjct: 121 CYIRATRRSNSEV 127

[Close]

BLAST of Lsi01G014810 vs. ExPASy TrEMBL
Match: A0A5D2BCQ1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G182300v1 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.8e-17
Identity = 65/151 (43.05%), Postives = 79/151 (52.32%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPT-----SAESPSGRKLGKHQSTAVV----FSSP 60
           M   LL    L NA +   + G AP P       AE+P+ RKLGKHQ          SSP
Sbjct: 1   MAQLLLLCLFLINAFVAMAASGNAPAPAPGEPYKAEAPTIRKLGKHQLLKTFDNAPASSP 60

Query: 61  SEAPRSEMKVQGTSAAASGGES---------------GNEIQLENHEHHKSRDKSIAGGG 120
           S+AP ++  +  T  + S   +               G  I L+NH HH S DKS+AGGG
Sbjct: 61  SQAPHTKKNMHPTVGSPSADHTAAITEPNKEENVSVDGEAIHLQNHHHHHSMDKSVAGGG 120

Query: 121 VILGGLATTFLVAVICYIRATRRQNSEVNSA 128
           VILGGLATTFLVAV CYIRAT R   E + +
Sbjct: 121 VILGGLATTFLVAVFCYIRATGRHKPETHQS 151

[Close]

BLAST of Lsi01G014810 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 uncharacterized protein E6C27_scaffold30G001250 [Cucumis melo var. makuwa] >TYK23611.1 uncharacterized protein E5676_scaffold500G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 5.9e-46
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           +PPFL  LFI ANA  +S++  AAPPPTSAESPS RKLGKHQSTA+ FSSP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           VQGTS AASGGESGN +QL NH+HHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 64  VQGTS-AASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 123

Query: 121 NSEVNS 127
            SE+ S
Sbjct: 124 KSELGS 128

[Close]

BLAST of Lsi01G014810 vs. NCBI nr
Match: KGN54308.1 (hypothetical protein Csa_017945 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-45
Identity = 101/126 (80.16%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           +PPFL  LFI ANAL +S++  AAPPPTSAESPS RKLGKHQSTA+ FSSP+EAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           VQGTS  ASGGESGN ++L NH+HHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ
Sbjct: 62  VQGTS-GASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 121

Query: 121 NSEVNS 127
            SE+ S
Sbjct: 122 KSELGS 126

[Close]

BLAST of Lsi01G014810 vs. NCBI nr
Match: KAG6603622.1 (hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033809.1 hypothetical protein SDJN02_03534, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.0 bits (458), Expect = 6.8e-42
Identity = 98/125 (78.40%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           M PFL  LFI ANALL SV+VGAAPPPT+AE PSGRKLGKH STAVVFSSPSEAPRSE K
Sbjct: 23  MAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKK 82

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           V    + A+ G +GNEI+LENHEHHKS DKS+AGGGVILGGLATTFLVA++CYIRATRRQ
Sbjct: 83  V----STANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQ 142

Query: 121 NSEVN 126
            SEV+
Sbjct: 143 -SEVS 142

[Close]

BLAST of Lsi01G014810 vs. NCBI nr
Match: XP_022151558.1 (uncharacterized protein LOC111019472 [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 5.4e-31
Identity = 90/133 (67.67%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSV-----GAAPPP--TSAESPSGRKLGKHQSTAVVF--SSP 60
           M  FL  LFI ANA LNSV V     GAAP P  T AE+PS RKLGKH+S A V   SSP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  SEAPRSEMKVQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVI 120
           SEAPRSEMKVQ TSAAA+ G          H +HK+ DKSIAGGGVILGGLATTFLVA+I
Sbjct: 61  SEAPRSEMKVQATSAAATNGGD------HQHHNHKASDKSIAGGGVILGGLATTFLVAII 120

Query: 121 CYIRATRRQNSEV 125
           CYIRATRR NSEV
Sbjct: 121 CYIRATRRSNSEV 127

[Close]

BLAST of Lsi01G014810 vs. NCBI nr
Match: KAG6595353.1 (hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027361.1 hypothetical protein SDJN02_11373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 8.0e-27
Identity = 77/124 (62.10%), Postives = 84/124 (67.74%), Query Frame = 0


Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           M PFL  LFI A+ALL+S +V A P       PS RKLG H S A V SSPSEAP+SE+K
Sbjct: 1   MAPFLFLLFIFASALLDSAAVAAEP-------PSARKLGNHWSAAAVSSSPSEAPQSEIK 60

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           V                 LEN EHHKSRD SIAGGGVILGGLATTF VA+ICYIRAT+RQ
Sbjct: 61  V-----------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQ 100

Query: 121 NSEV 125
           NSEV
Sbjct: 121 NSEV 100

[Close]

BLAST of Lsi01G014810 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 39/96 (40.62%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 24  APPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMKVQGTSAAASGGESGNEIQLENHE 83
           A   + AE P+ RKLG+H+       +P  +   E   +G                    
Sbjct: 19  AAASSEAEPPATRKLGRHEWPGEEAEAPEVSHLEETVRRG-------------------H 78

Query: 84  HHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRR 120
           HH + ++S+AGGGVILGGLATTFLV V CYIRATR+
Sbjct: 79  HHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of Lsi01G014810 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G014810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSM2	2.9e-46	80.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJV8	2.9e-46	80.95	uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=...	[more]
A0A0A0KXQ0	8.3e-46	80.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1	[more]
A0A6J1DCH7	2.6e-31	67.67	uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D2BCQ1	4.8e-17	43.05	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G182300v1 PE=...	[more]

BLAST of Lsi01G014810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448528.1	5.9e-46	80.95	PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 unc...	[more]
KGN54308.1	1.7e-45	80.16	hypothetical protein Csa_017945 [Cucumis sativus]	[more]
KAG6603622.1	6.8e-42	78.40	hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022151558.1	5.4e-31	67.67	uncharacterized protein LOC111019472 [Momordica charantia]	[more]
KAG6595353.1	8.0e-27	62.10	hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi01G014810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	1.5e-10	40.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..76
None	No IPR available	PANTHER	PTHR34558:SF9	F3L24.15 PROTEIN	coord: 2..129
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 2..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G014810.1	Lsi01G014810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane