Lsi01G014690 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G014690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCtenidin-1-like
Locationchr01: 12778221 .. 12778502 (-)
RNA-Seq ExpressionLsi01G014690
SyntenyLsi01G014690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAATCCGGCATTTATTATAATCCCAGTGGTTTTTCTTTCAGTTTGTGTAGTTGTAACGGCGTTGATTGTACTTTGCCGGTGGACATCTGGTGGCAGTTCCAGCGGAGGACATGCTCATTTCGTCGGAGCTGCCCATGATGGAGGATTTCATCATCATCATCATCATCATGGAGATGCCGGCGGCCACCACGCAGCACACCATTTTGGAGGTGGAGGACACGATTGTGGAGGTGGCGGTGGTGGAGGCGGCTTCGGCGGCGGTAGCTCTGCCTGTTGA

mRNA sequence

ATGGTTAATCCGGCATTTATTATAATCCCAGTGGTTTTTCTTTCAGTTTGTGTAGTTGTAACGGCGTTGATTGTACTTTGCCGGTGGACATCTGGTGGCAGTTCCAGCGGAGGACATGCTCATTTCGTCGGAGCTGCCCATGATGGAGGATTTCATCATCATCATCATCATCATGGAGATGCCGGCGGCCACCACGCAGCACACCATTTTGGAGGTGGAGGACACGATTGTGGAGGTGGCGGTGGTGGAGGCGGCTTCGGCGGCGGTAGCTCTGCCTGTTGA

Coding sequence (CDS)

ATGGTTAATCCGGCATTTATTATAATCCCAGTGGTTTTTCTTTCAGTTTGTGTAGTTGTAACGGCGTTGATTGTACTTTGCCGGTGGACATCTGGTGGCAGTTCCAGCGGAGGACATGCTCATTTCGTCGGAGCTGCCCATGATGGAGGATTTCATCATCATCATCATCATCATGGAGATGCCGGCGGCCACCACGCAGCACACCATTTTGGAGGTGGAGGACACGATTGTGGAGGTGGCGGTGGTGGAGGCGGCTTCGGCGGCGGTAGCTCTGCCTGTTGA

Protein sequence

MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGGHAHFVGAAHDGGFHHHHHHHGDAGGHHAAHHFGGGGHDCGGGGGGGGFGGGSSAC
Homology
BLAST of Lsi01G014690 vs. ExPASy TrEMBL
Match: A0A0A0KXN6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297480 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.0e-08
Identity = 58/94 (61.70%), Postives = 65/94 (69.15%), Query Frame = 0

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSS-GGHAHFVGAAHDGGFHHHHHHHG 60
          M +P F+I+P+VF+SV V+ T L  +C WTSG SSS GGHAHF GAAH GGFHHH   H 
Sbjct: 1  MADP-FVIVPLVFVSVVVLFTVLSFIC-WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHA 60

Query: 61 DAGGHHAAHHFGGGGHDCGGGGGGGGFGGGSSAC 94
              H A  H GGGGH CGGG GGG  GG SSAC
Sbjct: 61 H---HVAVAHSGGGGHGCGGGAGGG--GGSSSAC 87

BLAST of Lsi01G014690 vs. ExPASy TrEMBL
Match: A0A5D3DIY3 (Ctenidin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00980 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-06
Identity = 56/94 (59.57%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 7  IIIPVVFLSVCVVVTALIVLCRWTSGGSSS-GGHAHFVGAAHDGGFHHHHHHHGDAGGHH 66
          +II +VF+ + V    L ++C W SG SSS GGHAHF GAAHDGGFHHH   H     HH
Sbjct: 6  VIILLVFVPIVVFFALLSIIC-WNSGRSSSGGGHAHFGGAAHDGGFHHHAGGH----AHH 65

Query: 67 AA--HHFGGGGHDC----GGGGGGGGFGGGSSAC 94
           A   H GGGGHDC    GGGGGGGG GG SSAC
Sbjct: 66 VAIVTHSGGGGHDCGGAAGGGGGGGGGGGSSSAC 94

BLAST of Lsi01G014690 vs. ExPASy TrEMBL
Match: A0A0A0L128 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297470 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-05
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGGHAHFVGAAHDGGFHHHHHHHGD 60
          MV+ AFIIIPVVFLS+CVV   L +LCRWT GGSS+G  AHF GA   GG        G+
Sbjct: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGG----GDDGGE 60

Query: 61 AGGHHAAHHFGGGGHDCGGGGGGGGFGGG 90
           GG    +  GGGG+D GGG GGGG GGG
Sbjct: 61 DGGGGGGYDGGGGGYDGGGGSGGGGGGGG 85

BLAST of Lsi01G014690 vs. NCBI nr
Match: KAG6581831.1 (hypothetical protein SDJN03_21833, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 64/93 (68.82%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGGHAHFVGAAHDGGFHHHHHHHGD 60
          MV+PAFIIIPVVFLS+CVV T L +LCR T+GG++SGG AHF GAAH GG HH H     
Sbjct: 1  MVDPAFIIIPVVFLSICVVFTVLSLLCRGTAGGTTSGGGAHFGGAAHAGGLHHGH----- 60

Query: 61 AGGHHAAHHFGGGGHDCGGGGGGGGFGGGSSAC 94
          A  HHA  HFGGGGHD GGGGGGGG GGG   C
Sbjct: 61 AALHHAGGHFGGGGHDHGGGGGGGGGGGGGGGC 88

BLAST of Lsi01G014690 vs. NCBI nr
Match: KGN54298.1 (hypothetical protein Csa_017993 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 58/94 (61.70%), Postives = 65/94 (69.15%), Query Frame = 0

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSS-GGHAHFVGAAHDGGFHHHHHHHG 60
          M +P F+I+P+VF+SV V+ T L  +C WTSG SSS GGHAHF GAAH GGFHHH   H 
Sbjct: 1  MADP-FVIVPLVFVSVVVLFTVLSFIC-WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHA 60

Query: 61 DAGGHHAAHHFGGGGHDCGGGGGGGGFGGGSSAC 94
              H A  H GGGGH CGGG GGG  GG SSAC
Sbjct: 61 H---HVAVAHSGGGGHGCGGGAGGG--GGSSSAC 87

BLAST of Lsi01G014690 vs. NCBI nr
Match: XP_011654372.1 (glycine-rich protein DOT1 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 57/93 (61.29%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSS-GGHAHFVGAAHDGGFHHHHHHHG 60
          M +P F+I+P+VF+SV V+ T L  +C WTSG SSS GGHAHF GAAH GGFHHH   H 
Sbjct: 1  MADP-FVIVPLVFVSVVVLFTVLSFIC-WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHA 60

Query: 61 DAGGHHAAHHFGGGGHDCGGGGGGGGFGGGSSA 93
              H A  H GGGGH CGGG GGG  GG SSA
Sbjct: 61 H---HVAVAHSGGGGHGCGGGAGGG--GGSSSA 86

BLAST of Lsi01G014690 vs. NCBI nr
Match: KAA0045150.1 (ctenidin-1-like [Cucumis melo var. makuwa] >TYK23587.1 ctenidin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 56/94 (59.57%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 7  IIIPVVFLSVCVVVTALIVLCRWTSGGSSS-GGHAHFVGAAHDGGFHHHHHHHGDAGGHH 66
          +II +VF+ + V    L ++C W SG SSS GGHAHF GAAHDGGFHHH   H     HH
Sbjct: 6  VIILLVFVPIVVFFALLSIIC-WNSGRSSSGGGHAHFGGAAHDGGFHHHAGGH----AHH 65

Query: 67 AA--HHFGGGGHDC----GGGGGGGGFGGGSSAC 94
           A   H GGGGHDC    GGGGGGGG GG SSAC
Sbjct: 66 VAIVTHSGGGGHDCGGAAGGGGGGGGGGGSSSAC 94

BLAST of Lsi01G014690 vs. NCBI nr
Match: KGN54297.1 (hypothetical protein Csa_018030 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-05
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0

Query: 1  MVNPAFIIIPVVFLSVCVVVTALIVLCRWTSGGSSSGGHAHFVGAAHDGGFHHHHHHHGD 60
          MV+ AFIIIPVVFLS+CVV   L +LCRWT GGSS+G  AHF GA   GG        G+
Sbjct: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGG----GDDGGE 60

Query: 61 AGGHHAAHHFGGGGHDCGGGGGGGGFGGG 90
           GG    +  GGGG+D GGG GGGG GGG
Sbjct: 61 DGGGGGGYDGGGGGYDGGGGSGGGGGGGG 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXN68.0e-0861.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297480 PE=4 SV=1[more]
A0A5D3DIY35.8e-0659.57Ctenidin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G0098... [more]
A0A0A0L1282.2e-0558.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297470 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6581831.11.7e-1568.82hypothetical protein SDJN03_21833, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54298.11.7e-0761.70hypothetical protein Csa_017993 [Cucumis sativus][more]
XP_011654372.11.8e-0661.29glycine-rich protein DOT1 [Cucumis sativus][more]
KAA0045150.11.2e-0559.57ctenidin-1-like [Cucumis melo var. makuwa] >TYK23587.1 ctenidin-1-like [Cucumis ... [more]
KGN54297.14.5e-0558.43hypothetical protein Csa_018030 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G014690.1Lsi01G014690.1mRNA