Lsi01G014580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G014580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Early nodulin-75-like
Location	chr01: 12702333 .. 12703302 (-)
RNA-Seq Expression	Lsi01G014580
Synteny	Lsi01G014580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTCTAGTATTGATTAGGAATAAACGATATAATTAGATAAATTTTAGGAATAAAAAATATATAATTATATAAATTGGTAAAGAAAATAAATGGTGCAAGTGCAAAAAGATATAATTGTATAAACTTTATAAACCAATAATAAAAATTTTGAAATCAATAACAAATTAAAATAAATAATCTATAACCATACGTACTTGTTTTCTTAGGCCTTTTTTACAATGATTTTCATCTTTTATAACCAAACATACAAATTCTATTTTGTTTTTATTTTTTGTTTTTTGTTTTTTATTTTTTATTTTTTATTTTTAAAACCAATCGATAAAAGTAGTATTTGTAAACTTAAATTTTCAAAATCTGAAAACAAAAAACCAAATGGTTATCAATAGAGTCTTAACGTTTTTTTGTTCCCAAAAAATAGAAAAAAAAAAAAAAGCTTATATATATATATATATATATATATATATATATATAGTAAGAACCTTCCTAGAGTAAATTAAAGTCCTAATCTTTATTTTATTATCTAATTTTGAGAATAATTAAAAATTGAAGACTTGTTCTTCTTCCCACTCCTAATTAATTATATTATGTGCAGGCTGCAGGGGTCTGATATTCATGTATACAAAACCCTAAGCCTACCATCTCTTTGCTCTGTGGCAGTCCGAAACATGAATAATCCATATTATTCTTATTACAGCTATGGATATCCTTATCCTCATCAAGGATATCCCAAGTACCAAGCTGTTCCTTCTTATTATGGTGGATACACTACTACTTATCATGGACAATTGCATCCTTATCCTTATCAAGGATATCCTTATCCTGTAGCGACAACAAATCTTCCTCCTCCATATAATTATTATCAGCAAAACAATGGGACAAACACAGGGGGGATTTTGGCCTCCATGCTTTCGTCTGTCACTGGGAATATTGGTGCTTCTTTAATCTCTTCCCTTTTCTTTAACTAA

mRNA sequence

ATGAGGCTGCAGGGGTCTGATATTCATGTATACAAAACCCTAAGCCTACCATCTCTTTGCTCTGTGGCAGTCCGAAACATGAATAATCCATATTATTCTTATTACAGCTATGGATATCCTTATCCTCATCAAGGATATCCCAAGTACCAAGCTGTTCCTTCTTATTATGGTGGATACACTACTACTTATCATGGACAATTGCATCCTTATCCTTATCAAGGATATCCTTATCCTGTAGCGACAACAAATCTTCCTCCTCCATATAATTATTATCAGCAAAACAATGGGACAAACACAGGGGGGATTTTGGCCTCCATGCTTTCGTCTGTCACTGGGAATATTGGTGCTTCTTTAATCTCTTCCCTTTTCTTTAACTAA

Coding sequence (CDS)

ATGAGGCTGCAGGGGTCTGATATTCATGTATACAAAACCCTAAGCCTACCATCTCTTTGCTCTGTGGCAGTCCGAAACATGAATAATCCATATTATTCTTATTACAGCTATGGATATCCTTATCCTCATCAAGGATATCCCAAGTACCAAGCTGTTCCTTCTTATTATGGTGGATACACTACTACTTATCATGGACAATTGCATCCTTATCCTTATCAAGGATATCCTTATCCTGTAGCGACAACAAATCTTCCTCCTCCATATAATTATTATCAGCAAAACAATGGGACAAACACAGGGGGGATTTTGGCCTCCATGCTTTCGTCTGTCACTGGGAATATTGGTGCTTCTTTAATCTCTTCCCTTTTCTTTAACTAA

Protein sequence

MRLQGSDIHVYKTLSLPSLCSVAVRNMNNPYYSYYSYGYPYPHQGYPKYQAVPSYYGGYTTTYHGQLHPYPYQGYPYPVATTNLPPPYNYYQQNNGTNTGGILASMLSSVTGNIGASLISSLFFN

Homology

[Close]

BLAST of Lsi01G014580 vs. ExPASy TrEMBL
Match: A0A0A0KZN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296860 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 69/113 (61.06%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 27  MNNPYYSYYSYGYPYPHQGYPKY--QAVP---SYYGGYTTTYHGQLHPYP-------YQG 86
           MNNP Y +YSYGYPYPHQGYPKY  Q VP   +Y  GYT   HG +HPY        YQ 
Sbjct: 1   MNNP-YGHYSYGYPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQA 60

Query: 87  YPYPVATTNLPPPYNYYQQNNGTN-TGGILASMLSSVTGNIG-ASLISSLFFN 126
           YPYP  +T L PP   YQQN  TN  GGILASMLSSV+GN   AS +SSLFFN
Sbjct: 61  YPYPPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGNGSIASFVSSLFFN 112

[Close]

BLAST of Lsi01G014580 vs. ExPASy TrEMBL
Match: A0A5A7TUH5 (Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00750 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 67/108 (62.04%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 27  MNNPYYSYYSYGYPYPHQGYPKY--QAVP---SYYGGYTTTYHGQLHPYPY--QGYPYPV 86
           MNNP Y  YSYGYPYPHQGYPKY  Q VP    Y  GY    HG +HPYP     YPYP 
Sbjct: 1   MNNP-YGCYSYGYPYPHQGYPKYQGQGVPPNYKYGAGYINYGHGHVHPYPCYDYSYPYPP 60

Query: 87  ATTNLPPPYNYYQQNNGTN-TGGILASMLSSVTGNIG-ASLISSLFFN 126
            +T L PP   YQQN GTN T GIL SMLSSV+GN   AS ISSLFF+
Sbjct: 61  PSTTLIPPQYNYQQNYGTNITEGILPSMLSSVSGNGSIASFISSLFFS 107

[Close]

BLAST of Lsi01G014580 vs. ExPASy TrEMBL
Match: A0A5A7TUG4 (Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00850 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 59/137 (43.07%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 27  MNNPYYSYYSYGYPYPH-QGYPKYQAV--PSYYGGYTTTY-HGQLHPYP---YQGYP-YP 86
           MNNP Y YYS+GYPYPH + YPKY+A   P    GYT+ + +   +PYP   YQGYP Y 
Sbjct: 1   MNNP-YGYYSHGYPYPHKRSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYD 60

Query: 87  VATTNLPPPY--------NYYQQNNGTNTG----------------------GILASMLS 126
             TT  PPP+        +YY   +    G                      G L SMLS
Sbjct: 61  APTTKAPPPHQCSYHEYEDYYPYPSRNYQGYPKYDAPTTKAPPSHQYRPKKEGSLTSMLS 120

[Close]

BLAST of Lsi01G014580 vs. ExPASy TrEMBL
Match: A0A1S3BP00 (early nodulin-75-like OS=Cucumis melo OX=3656 GN=LOC103491729 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 59/137 (43.07%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 27  MNNPYYSYYSYGYPYPH-QGYPKYQAV--PSYYGGYTTTY-HGQLHPYP---YQGYP-YP 86
           MNNP Y YYS+GYPYPH + YPKY+A   P    GYT+ + +   +PYP   YQGYP Y 
Sbjct: 1   MNNP-YGYYSHGYPYPHKRSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYD 60

Query: 87  VATTNLPPPY--------NYYQQNNGTNTG----------------------GILASMLS 126
             TT  PPP+        +YY   +    G                      G L SMLS
Sbjct: 61  APTTKAPPPHQCSYHEYEDYYPYPSRNYQGYPKYDAPTTKAPPSHQYRPKKEGSLTSMLS 120

[Close]

BLAST of Lsi01G014580 vs. NCBI nr
Match: KAA0045171.1 (early nodulin-75-like [Cucumis melo var. makuwa] >TYK23567.1 early nodulin-75-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-17
Identity = 67/108 (62.04%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 27  MNNPYYSYYSYGYPYPHQGYPKY--QAVP---SYYGGYTTTYHGQLHPYPY--QGYPYPV 86
           MNNP Y  YSYGYPYPHQGYPKY  Q VP    Y  GY    HG +HPYP     YPYP 
Sbjct: 1   MNNP-YGCYSYGYPYPHQGYPKYQGQGVPPNYKYGAGYINYGHGHVHPYPCYDYSYPYPP 60

Query: 87  ATTNLPPPYNYYQQNNGTN-TGGILASMLSSVTGNIG-ASLISSLFFN 126
            +T L PP   YQQN GTN T GIL SMLSSV+GN   AS ISSLFF+
Sbjct: 61  PSTTLIPPQYNYQQNYGTNITEGILPSMLSSVSGNGSIASFISSLFFS 107

[Close]

BLAST of Lsi01G014580 vs. NCBI nr
Match: KAE8649545.1 (hypothetical protein Csa_017919 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 6.9e-17
Identity = 61/100 (61.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 27  MNNPYYSYYSYGYPYPHQGYPKY--QAVP---SYYGGYTTTYHGQLHPYP-------YQG 86
           MNNP Y +YSYGYPYPHQGYPKY  Q VP   +Y  GYT   HG +HPY        YQ 
Sbjct: 1   MNNP-YGHYSYGYPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQA 60

Query: 87  YPYPVATTNLPPPYNYYQQNNGTN-TGGILASMLSSVTGN 114
           YPYP  +T L PP   YQQN  TN  GGILASMLSSV+GN
Sbjct: 61  YPYPPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGN 99

[Close]

BLAST of Lsi01G014580 vs. NCBI nr
Match: XP_008450016.1 (PREDICTED: early nodulin-75-like [Cucumis melo] >KAA0045161.1 early nodulin-75-like [Cucumis melo var. makuwa] >TYK23577.1 early nodulin-75-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-08
Identity = 59/137 (43.07%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 27  MNNPYYSYYSYGYPYPH-QGYPKYQAV--PSYYGGYTTTY-HGQLHPYP---YQGYP-YP 86
           MNNP Y YYS+GYPYPH + YPKY+A   P    GYT+ + +   +PYP   YQGYP Y 
Sbjct: 1   MNNP-YGYYSHGYPYPHKRSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYD 60

Query: 87  VATTNLPPPY--------NYYQQNNGTNTG----------------------GILASMLS 126
             TT  PPP+        +YY   +    G                      G L SMLS
Sbjct: 61  APTTKAPPPHQCSYHEYEDYYPYPSRNYQGYPKYDAPTTKAPPSHQYRPKKEGSLTSMLS 120

The following BLAST results are available for this feature:

BLAST of Lsi01G014580 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G014580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZN9	1.6e-19	61.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296860 PE=4 SV=1	[more]
A0A5A7TUH5	2.6e-17	62.04	Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5A7TUG4	1.3e-08	43.07	Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A1S3BP00	1.3e-08	43.07	early nodulin-75-like OS=Cucumis melo OX=3656 GN=LOC103491729 PE=4 SV=1	[more]

BLAST of Lsi01G014580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045171.1	5.3e-17	62.04	early nodulin-75-like [Cucumis melo var. makuwa] >TYK23567.1 early nodulin-75-li...	[more]
KAE8649545.1	6.9e-17	61.00	hypothetical protein Csa_017919 [Cucumis sativus]	[more]
XP_008450016.1	2.6e-08	43.07	PREDICTED: early nodulin-75-like [Cucumis melo] >KAA0045161.1 early nodulin-75-l...	[more]

BLAST of Lsi01G014580 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G014580.1	Lsi01G014580.1	mRNA