Lsi01G014300 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G014300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Expansin
Location	chr01: 12459638 .. 12460757 (-)
RNA-Seq Expression	Lsi01G014300
Synteny	Lsi01G014300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTGAGTGACATTCCCTAAACTGCCCTGCCTTAGTGGGATTTTCAATTTTTTTTGGGATTTTCCTTTTTGTTTTTTTTTTTACTTAATTGAAAATTAAATAGATCAGAGACTTTAATTTATTTATTTTTAAATGTTACCTTACCTCAAATAAAATGGCCCACATATTGTAAAATAAAGTAATTTATAATGTTCAGCTTATTTCTTAGGACATAATATAACATATTAAAAAGACCCCATAAAAAGGAAAAAAACCATAAAGTGATAATTAATTTTCTTGCAATTACAGGGTGCCATGTAGGAAACAAGGCGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAACTTGGTACTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGATCAAACACCAATTGGATGAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACATTCACGGGAAAGAATTTCCGCGTTTGAAATTCCCTCCCTTTCTTTTTATCCTTTTTTTGAAAATTTTCCCTCTCTCTTTTTTTCCCCTCTTATTTACCCGGGAAAATTTGGAGTAGTGGGGAGAGGTAAAAGTAAAAGTAGGACGGTCAAAATGGTCTTTTTAGGGTTAAAAAGTCACAGCAATTATAAGTGTGTGTAATTCCGAATCATAGCCTCATAGGTGTAGGAAAAGTTACCGAGGTGTGGTAACTTCTTACTTTTTTACATTGTTTTGTTTTGGGGGTTTCTTTTTTTTCCGTTTGTTTGTTGGGTGTGTGCTTTTATGTTAAGTAGCCGTGGTGAATTTAAAAATTACCGCGGTTGAAAAGAATGTAGGGGGAGGCTGAAGTGGCTGCAATGGTAAATGTGTAGCCCGCAGCATTTTACTGCTACATACAGTAAAGTTATGTTATATTTATATCCTTATATGAAAGACTCAAATGTGTTATTATTATTCCAAAGAATTGTACCGTAAAATTGAAAAATGTTCGGAAGGTTATTATTTAA

mRNA sequence

ATGAAGGTGCCATGTAGGAAACAAGGCGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAACTTGGTACTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGATCAAACACCAATTGGATGAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACATTCACGGGAAAGAATTTCCGCGTTTGAAATTCCCTCCCTTTCTTTTTATCCTTTTTTTGAAAATTTTCCCTCTCTCTTTTTTTCCCCTCTTATTTACCCGGGAAAATTTGGAGTAGTGGGGAGAGGTAAAAGTAAAAGTAGGACGGTCAAAATGGTCTTTTTAGGGTTAAAAAGTCACAGCAATTATAAGTGTGTGTAATTCCGAATCATAGCCTCATAGGTGTAGGAAAAGTTACCGAGGTGTGGTAACTTCTTACTTTTTTACATTGTTTTGTTTTGGGGGTTTCTTTTTTTTCCGTTTGTTTGTTGGGTGTGTGCTTTTATGTTAAGTAGCCGTGGTGAATTTAAAAATTACCGCGGTTGAAAAGAATGTAGGGGGAGGCTGAAGTGGCTGCAATGGTAAATGTGTAGCCCGCAGCATTTTACTGCTACATACAGTAAAGTTATGTTATATTTATATCCTTATATGAAAGACTCAAATGTGTTATTATTATTCCAAAGAATTGTACCGTAAAATTGAAAAATGTTCGGAAGGTTATTATTTAA

Coding sequence (CDS)

ATGAAGGTGCCATGTAGGAAACAAGGCGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAACTTGGTACTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGATCAAACACCAATTGGATGAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACATTCACGGGAAAGAATTTCCGCGTTTGA

Protein sequence

MKVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV

Homology

[Close]

BLAST of Lsi01G014300 vs. ExPASy Swiss-Prot
Match: O48818 (Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.1e-50
Identity = 92/103 (89.32%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRK+GGIRFTING RYFNLVLITNVAGAGDIVR SVKGS T WMS+SRNWGQNWQSN
Sbjct: 155 RVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSN 214

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQALSFRVTGSDRRTSTSWN+ PSNWQFGQTF GKNFRV
Sbjct: 215 AVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFRV 257

[Close]

BLAST of Lsi01G014300 vs. ExPASy Swiss-Prot
Match: Q852A1 (Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.0e-49
Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRK+GG+RFTINGFRYFNLVLITNVAGAGDIVR SVKG++T WM MSRNWGQNWQSN
Sbjct: 162 RVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSN 221

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           SVLVGQALSFRVTGSDRRTSTSWN AP+ W FGQTF GKNFRV
Sbjct: 222 SVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFRV 264

[Close]

BLAST of Lsi01G014300 vs. ExPASy Swiss-Prot
Match: Q38865 (Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-48
Identity = 86/103 (83.50%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRK+GGIRFTINGFRYFNLVL+TNVAGAG+IVR+ VKG++T+WM+MSRNWGQNWQSN
Sbjct: 155 RVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSN 214

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           SVLVGQ+LSFRVT SDRR+STSWN+AP+NW+FGQTF GKNFRV
Sbjct: 215 SVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNFRV 257

[Close]

BLAST of Lsi01G014300 vs. ExPASy Swiss-Prot
Match: Q9M2S9 (Expansin-A16 OS=Arabidopsis thaliana OX=3702 GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.0e-48
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +V CRK GGIRFTING RYFNLVLITNVAGAGDI R SVKGS T WMS++RNWGQNWQSN
Sbjct: 158 RVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSN 217

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ+LSFRVT SDRRTSTSWN+APSNWQFGQTF GKNFRV
Sbjct: 218 AVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFRV 260

[Close]

BLAST of Lsi01G014300 vs. ExPASy Swiss-Prot
Match: O80932 (Expansin-A3 OS=Arabidopsis thaliana OX=3702 GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 7.2e-47
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRK GGIRFT+NGFRYFNLVL+TNVAGAGDI  VSVKGS T+W+ MSRNWGQNWQSN
Sbjct: 160 RVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSN 219

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VL+GQ+LSFRVT SDRR+STSWNVAP+ WQFGQTF+GKNFRV
Sbjct: 220 AVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFRV 262

[Close]

BLAST of Lsi01G014300 vs. ExPASy TrEMBL
Match: Q06BI7 (Expansin OS=Cucumis melo OX=3656 GN=EXP1 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN
Sbjct: 157 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSN 216

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV
Sbjct: 217 AVLVGQTLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 259

[Close]

BLAST of Lsi01G014300 vs. ExPASy TrEMBL
Match: A0A5D3DIS7 (Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00410 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN
Sbjct: 118 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSN 177

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV
Sbjct: 178 AVLVGQTLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 220

[Close]

BLAST of Lsi01G014300 vs. ExPASy TrEMBL
Match: A0A5A7STM7 (Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00420 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN
Sbjct: 157 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSN 216

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV
Sbjct: 217 AVLVGQTLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 259

[Close]

BLAST of Lsi01G014300 vs. ExPASy TrEMBL
Match: A0A218XD73 (Expansin OS=Punica granatum OX=22663 GN=LOC116207559 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 95/103 (92.23%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVR+S+KGSNT WMSMSRNWGQNWQSN
Sbjct: 158 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRLSIKGSNTGWMSMSRNWGQNWQSN 217

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ+LSFRVTGSDRRTSTSWN+AP+NWQFGQTFTGKNFRV
Sbjct: 218 AVLVGQSLSFRVTGSDRRTSTSWNIAPANWQFGQTFTGKNFRV 260

[Close]

BLAST of Lsi01G014300 vs. ExPASy TrEMBL
Match: C3U028 (Expansin OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIV+VSVKGSNT WMSMSRNWGQNWQSN
Sbjct: 157 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTGWMSMSRNWGQNWQSN 216

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ LSFR+TGSDRRTSTSWNVAPSNWQFGQTFTGKNFR+
Sbjct: 217 AVLVGQTLSFRLTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRI 259

[Close]

BLAST of Lsi01G014300 vs. NCBI nr
Match: XP_038880867.1 (expansin-A4-like [Benincasa hispida])

HSP 1 Score: 213.8 bits (543), Expect = 7.2e-52
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN
Sbjct: 159 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSN 218

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV
Sbjct: 219 SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 261

[Close]

BLAST of Lsi01G014300 vs. NCBI nr
Match: TYK23537.1 (expansin-A4 precursor [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 4.7e-51
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN
Sbjct: 118 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSN 177

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV
Sbjct: 178 AVLVGQTLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 220

[Close]

BLAST of Lsi01G014300 vs. NCBI nr
Match: KAA0032657.1 (expansin-A4 precursor [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 4.7e-51
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN
Sbjct: 157 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSN 216

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV
Sbjct: 217 AVLVGQTLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 259

[Close]

BLAST of Lsi01G014300 vs. NCBI nr
Match: NP_001284471.1 (expansin-A4 precursor [Cucumis melo] >ABI94060.1 ripening-related expansin [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 4.7e-51
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN
Sbjct: 157 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSN 216

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV
Sbjct: 217 AVLVGQTLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 259

[Close]

BLAST of Lsi01G014300 vs. NCBI nr
Match: KAG6595327.1 (Expansin-A4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027336.1 Expansin-A4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN
Sbjct: 157 RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSN 216

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           ++LVGQ+LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNF V
Sbjct: 217 AILVGQSLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFHV 259

[Close]

BLAST of Lsi01G014300 vs. TAIR 10
Match: AT2G39700.1 (expansin A4 )

HSP 1 Score: 198.7 bits (504), Expect = 2.2e-51
Identity = 92/103 (89.32%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRK+GGIRFTING RYFNLVLITNVAGAGDIVR SVKGS T WMS+SRNWGQNWQSN
Sbjct: 155 RVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSN 214

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQALSFRVTGSDRRTSTSWN+ PSNWQFGQTF GKNFRV
Sbjct: 215 AVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFRV 257

[Close]

BLAST of Lsi01G014300 vs. TAIR 10
Match: AT2G28950.1 (expansin A6 )

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-49
Identity = 86/103 (83.50%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRK+GGIRFTINGFRYFNLVL+TNVAGAG+IVR+ VKG++T+WM+MSRNWGQNWQSN
Sbjct: 155 RVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSN 214

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           SVLVGQ+LSFRVT SDRR+STSWN+AP+NW+FGQTF GKNFRV
Sbjct: 215 SVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNFRV 257

[Close]

BLAST of Lsi01G014300 vs. TAIR 10
Match: AT3G55500.1 (expansin A16 )

HSP 1 Score: 191.4 bits (485), Expect = 3.6e-49
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +V CRK GGIRFTING RYFNLVLITNVAGAGDI R SVKGS T WMS++RNWGQNWQSN
Sbjct: 158 RVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSN 217

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VLVGQ+LSFRVT SDRRTSTSWN+APSNWQFGQTF GKNFRV
Sbjct: 218 AVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFRV 260

[Close]

BLAST of Lsi01G014300 vs. TAIR 10
Match: AT2G37640.1 (Barwin-like endoglucanases superfamily protein )

HSP 1 Score: 187.6 bits (475), Expect = 5.1e-48
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           +VPCRK GGIRFT+NGFRYFNLVL+TNVAGAGDI  VSVKGS T+W+ MSRNWGQNWQSN
Sbjct: 160 RVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSN 219

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           +VL+GQ+LSFRVT SDRR+STSWNVAP+ WQFGQTF+GKNFRV
Sbjct: 220 AVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFRV 262

[Close]

BLAST of Lsi01G014300 vs. TAIR 10
Match: AT5G02260.1 (expansin A9 )

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-46
Identity = 80/103 (77.67%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 2   KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSN 61
           ++PCRK+GGIRFTINGF+YFNLVL+TNVAGAGD+++VSVKGSNT W+ +SRNWGQNWQSN
Sbjct: 156 RIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSN 215

Query: 62  SVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 105
           ++LVGQ+LSFRV  SD R+STS N+APSNWQFGQT++GKNFRV
Sbjct: 216 ALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFRV 258

The following BLAST results are available for this feature:

BLAST of Lsi01G014300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48818	3.1e-50	89.32	Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1	[more]
Q852A1	2.0e-49	87.38	Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1	[more]
Q38865	1.7e-48	83.50	Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2	[more]
Q9M2S9	5.0e-48	85.44	Expansin-A16 OS=Arabidopsis thaliana OX=3702 GN=EXPA16 PE=2 SV=1	[more]
O80932	7.2e-47	82.52	Expansin-A3 OS=Arabidopsis thaliana OX=3702 GN=EXPA3 PE=2 SV=1	[more]

BLAST of Lsi01G014300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q06BI7	2.3e-51	96.12	Expansin OS=Cucumis melo OX=3656 GN=EXP1 PE=2 SV=1	[more]
A0A5D3DIS7	2.3e-51	96.12	Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00410 PE=3 ...	[more]
A0A5A7STM7	2.3e-51	96.12	Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00420 PE=3 ...	[more]
A0A218XD73	1.5e-50	92.23	Expansin OS=Punica granatum OX=22663 GN=LOC116207559 PE=3 SV=1	[more]
C3U028	1.5e-50	93.20	Expansin OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]

BLAST of Lsi01G014300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880867.1	7.2e-52	98.06	expansin-A4-like [Benincasa hispida]	[more]
TYK23537.1	4.7e-51	96.12	expansin-A4 precursor [Cucumis melo var. makuwa]	[more]
KAA0032657.1	4.7e-51	96.12	expansin-A4 precursor [Cucumis melo var. makuwa]	[more]
NP_001284471.1	4.7e-51	96.12	expansin-A4 precursor [Cucumis melo] >ABI94060.1 ripening-related expansin [Cucu...	[more]
KAG6595327.1	1.8e-50	94.17	Expansin-A4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027336.1 Expan...	[more]

BLAST of Lsi01G014300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39700.1	2.2e-51	89.32	expansin A4	[more]
AT2G28950.1	1.2e-49	83.50	expansin A6	[more]
AT3G55500.1	3.6e-49	85.44	expansin A16	[more]
AT2G37640.1	5.1e-48	82.52	Barwin-like endoglucanases superfamily protein	[more]
AT5G02260.1	1.7e-46	77.67	expansin A9	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 9..21 score: 84.1 coord: 85..101 score: 67.65 coord: 21..42 score: 73.48 coord: 56..77 score: 73.94
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 47..61 score: 71.5 coord: 85..99 score: 60.17
IPR007117	Expansin, cellulose-binding-like domain	PFAM	PF01357	Expansin_C	coord: 11..88 e-value: 1.6E-28 score: 98.5
IPR007117	Expansin, cellulose-binding-like domain	PROSITE	PS50843	EXPANSIN_CBD	coord: 20..99 score: 22.132626
IPR036749	Expansin, cellulose-binding-like domain superfamily	GENE3D	2.60.40.760		coord: 10..102 e-value: 4.1E-26 score: 92.8
IPR036749	Expansin, cellulose-binding-like domain superfamily	SUPERFAMILY	49590	PHL pollen allergen	coord: 7..99
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 2..103
None	No IPR available	PANTHER	PTHR31867:SF100	EXPANSIN	coord: 2..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G014300.1	Lsi01G014300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane