Lsi01G014040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G014040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Histone H2A
Location	chr01: 12195265 .. 12197905 (-)
RNA-Seq Expression	Lsi01G014040
Synteny	Lsi01G014040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAATAACAAACTCGAAATTTGTTTATAATTTAGCCATATAATATAATTAAAATGAATAAAAATACAGCGATGTGTCCATGTCATCACGAATACGGCGTGTGTCATTCACTTTCCATTTTATTTCTCATTTCATCCAAATGTCATCTCCGTTGAAAACCCGTCGTTAACATCCCTCAAATTTTCACTTCTTTTTTTTCTGTTTGTTTCTCGAGAAAATTTTCTCTTCCAATGGACTTTGGCGGCAAGGCGAAGAGAGGCGTCGCCGGCAGAAGGGGCGGCGGCGGTCCCAAGAAGAAGCCTGTCTCTCGCTCCGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGCTACTCACGACGGGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCAGAGGTGAATATATACTACTTCGTTCTTCTTTGTTTCTCACTTTTGATTTACTTAATTTAGGGTTTCTTTTTTCAGCTTCTGTTAGAGGATTACACGTATTGAATGTGTGTGCGAAATCAAAACCTTTCTTCGATGGATTCAATGCTTGGATTGAAGTGCATTTTCTTTATTTCTTGTCAATGGCTTAGAATTTGATTTTATTAGTTCTTTCTTTCCGGAGATAAAATCCCAATTTGATGGAATTAGGTGCTTTTTTTTTTATTATTATTATTATTCTATCTAATCTATTCTCTGATAATTTCTCTATGTGGTTTTGTTTATATAGACAAGTCCATTCTAATAAGTTTTCAGACAATCTAGAAAGAAAAAAAATCACCTAAACTTTTTGGTATATTTTTTTAAAAAAATAGAATTTAAGGTCTGTTTGATATCAATTTCACTTTTAATTTTCTGTTTTTGAAATTTATGCCGGTTTTCTGTCTTTTTATTTTTGTTTTCCAAACACTTTTTGTTTTCATGTTTGGTAAAGAAACACTTGAATTTTCTGTCAAATTCTTAAAATAAATACAAGTTTTAGCTTGATTTTTTAAAACATGGCGCTTAGAAATTCTAAGCTTTTTTTTTTATTATTATTATTTTAAAAAAAGAGAAAACTGTATAGTTATCAAAATGGGATCTAAATTATTTTCTAAGTTTACTGATTATGATTTGAAAAATGATTTTATAAAAAATAGAATTTATTTCAGGTGTTTGTTGTCTTTTTAAAGATCTTTGTTTGGTAGAGATTTAATTTGAAAAAGCGTACAAATGTTGTTTATAATGTATATATAATTCAAATACTGTTTTAAAAAATAAATTCATTTTTTCAAATATTTAATTTAAAAAATTAGAAATTCAATCTGAATAGATTCCCAACTGCCTTCGGTATCCACTCGCTTGCTTTTTTACAACTCTTTTTCCGCTGCCCTTTATGTCCTGATTCCAATGCTTTATCCAAACTTGACTTTTGAAAGCTCCAAGCAAAGGGCCAAATATAGGATTTATTTATCAATGTTTTAATTTTGGCTTCATAAAAATGGCTGCCTTTTTTACTCTATTTTAGTTCAACAATTGCAGGATTGGATATCGAGCCATCGATCTTTGAGATGGTAAATTTATGTTTTTGTCTATTGAGCTATGCTCGAATTGACACTTTCTAAATTTATTATGAAATACAACCTTGAATTTCTATGTTTCTTATTAAGAAAAACTTCGATCATCCAACGAAGTTTAGTAGAATTCTTTTAATTTATTCACTGATGGAATCTTACACTTAGGAGTTTGATGATACTACAAGAAGTCATATTTTATACATAACGAACTTATAAACTTAAATGTTTTGACGAAGTGGTGATTCAATATAGGATATGAATTCATGGGTTTAATTCATGGTAACCACCTACGTAGGATTTAATATCCTACGAGGTTCCTTGACACCTAAATGTTATAGGATCAAACGGGTTGTCTCGTGAGATTAGTTGAGGTGTGCGTCAGCTGGCTCGGACACTCACGGATATTAAAAAAAAAAATGCATCTCAATTGGAGAACTTAGGTTCAAATACTTATAATAATTAATATCAATAATTAATTGTTGAGTTTTGTGCGAATTTCCGAGCAAGGAAGTACTAAGAATACCTGTAAAAGATTAAGCATACTATATCCTATCAGTTTAAGACTGAATTATGCTTTAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACATGTCCTTTTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCTGGGGTGACGATCGCTCATGGTGGGGTGCTTCCGAATATCAACCCTGTCCTTCTTCCAAAGAAATCTGAGAGAGCAGCAGCAGCAAAGGAGCCCAAGTCTCCCTCCAAGGGCACCAAGTCCCCAAAGAAGGCCTAGCTTAGCTTCTCATATGCCCCCACCTACTTAATTCTGTATTTAGATTGAACTTTATCTTCATGTTTAGGACCACTTTATATTGTAGGACATTCCTTTGTGTTCTCACAACGTAGTTGAAATGATGTAAGATTTAACCTCTCTTATGAATCTCTGTATTTTCTCCACTAATGGGTTAATGTATGTGATGTAAAAAATTATAAAATCATTAGTATGTTTTAGTTAA

mRNA sequence

AAACAAATAACAAACTCGAAATTTGTTTATAATTTAGCCATATAATATAATTAAAATGAATAAAAATACAGCGATGTGTCCATGTCATCACGAATACGGCGTGTGTCATTCACTTTCCATTTTATTTCTCATTTCATCCAAATGTCATCTCCGTTGAAAACCCGTCGTTAACATCCCTCAAATTTTCACTTCTTTTTTTTCTGTTTGTTTCTCGAGAAAATTTTCTCTTCCAATGGACTTTGGCGGCAAGGCGAAGAGAGGCGTCGCCGGCAGAAGGGGCGGCGGCGGTCCCAAGAAGAAGCCTGTCTCTCGCTCCGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGCTACTCACGACGGGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCAGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACATGTCCTTTTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCTGGGGTGACGATCGCTCATGGTGGGGTGCTTCCGAATATCAACCCTGTCCTTCTTCCAAAGAAATCTGAGAGAGCAGCAGCAGCAAAGGAGCCCAAGTCTCCCTCCAAGGGCACCAAGTCCCCAAAGAAGGCCTAGCTTAGCTTCTCATATGCCCCCACCTACTTAATTCTGTATTTAGATTGAACTTTATCTTCATGTTTAGGACCACTTTATATTGTAGGACATTCCTTTGTGTTCTCACAACGTAGTTGAAATGATGTAAGATTTAACCTCTCTTATGAATCTCTGTATTTTCTCCACTAATGGGTTAATGTATGTGATGTAAAAAATTATAAAATCATTAGTATGTTTTAGTTAA

Coding sequence (CDS)

ATGGACTTTGGCGGCAAGGCGAAGAGAGGCGTCGCCGGCAGAAGGGGCGGCGGCGGTCCCAAGAAGAAGCCTGTCTCTCGCTCCGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGCTACTCACGACGGGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCAGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACATGTCCTTTTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCTGGGGTGACGATCGCTCATGGTGGGGTGCTTCCGAATATCAACCCTGTCCTTCTTCCAAAGAAATCTGAGAGAGCAGCAGCAGCAAAGGAGCCCAAGTCTCCCTCCAAGGGCACCAAGTCCCCAAAGAAGGCCTAG

Protein sequence

MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAAAKEPKSPSKGTKSPKKA

Homology

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BLAST of Lsi01G014040 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.6e-66
Identity = 134/153 (87.58%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD G K K+G AGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAA-AKEPKSPSKGTKSPKKA 153
           INP+LLPKKSE+AA+  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of Lsi01G014040 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-65
Identity = 136/154 (88.31%), Postives = 144/154 (93.51%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD G K K+G AG R GGGPKKKPVSRSVKAGLQFPVGRIGR+LK GRY++RVG+GAPVY
Sbjct: 1   MDTGAKLKKG-AGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAA--KEPKSPSKGTKSPKKA 153
           INPVLLPKK+E+AAAA  KEPKSP+K TKSPKKA
Sbjct: 121 INPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

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BLAST of Lsi01G014040 vs. ExPASy Swiss-Prot
Match: A2Y5G8 (Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.7e-63
Identity = 134/160 (83.75%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 1   MDFGGKA--KRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAP 60
           M+ G K   K G  GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYS+R+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSERAAA-----AKEPKSPSKG-TKSPKKA 153
           PNINPVLLPKK+  AAA      K PKSP K  TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

[Close]

BLAST of Lsi01G014040 vs. ExPASy Swiss-Prot
Match: Q6L500 (Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.7e-63
Identity = 134/160 (83.75%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 1   MDFGGKA--KRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAP 60
           M+ G K   K G  GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYS+R+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSERAAA-----AKEPKSPSKG-TKSPKKA 153
           PNINPVLLPKK+  AAA      K PKSP K  TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

[Close]

BLAST of Lsi01G014040 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.5e-61
Identity = 127/152 (83.55%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           M+  GKAK+G  GR+  GGP+KK V+RSVKAGLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   METAGKAKKGFGGRK--GGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKK+    AAKEPKSPSK  KSPKKA
Sbjct: 121 INPVLLPKKTAE-KAAKEPKSPSKAGKSPKKA 149

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BLAST of Lsi01G014040 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 146/152 (96.05%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD GGKAK+G AGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERAAA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of Lsi01G014040 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.1e-70
Identity = 145/152 (95.39%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD GGKAK+G AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of Lsi01G014040 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.4e-70
Identity = 146/153 (95.42%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD GGKAK+G AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERA  AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of Lsi01G014040 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.4e-70
Identity = 146/153 (95.42%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD GGKAK+G AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERA  AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of Lsi01G014040 vs. ExPASy TrEMBL
Match: A0A2N9IZ61 (Histone H2A OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58509 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 139/152 (91.45%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD GGK KRG AGR+ GGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDTGGKVKRGAAGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKK+E+ AAAKEPKSP++ TKSPKKA
Sbjct: 121 INPVLLPKKTEK-AAAKEPKSPARATKSPKKA 150

[Close]

BLAST of Lsi01G014040 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 274.2 bits (700), Expect = 6.6e-70
Identity = 146/152 (96.05%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD GGKAK+G AGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERAAA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of Lsi01G014040 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 8.6e-70
Identity = 145/152 (95.39%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD GGKAK+G AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of Lsi01G014040 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 146/153 (95.42%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD GGKAK+G AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERA  AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of Lsi01G014040 vs. NCBI nr
Match: XP_038881325.1 (probable histone H2A.4 [Benincasa hispida])

HSP 1 Score: 261.9 bits (668), Expect = 3.4e-66
Identity = 142/153 (92.81%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD G KAK+GVAGR+GGGGPKKKPVSRSVKAGLQFPVGRI RYLK GRYSRRVGTGAPVY
Sbjct: 1   MDTGDKAKKGVAGRKGGGGPKKKPVSRSVKAGLQFPVGRIDRYLKEGRYSRRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAAKEPKSPSKGTKSPKKA 153
           INPVLL KKSERA AAAKEPKS SK T+SPKKA
Sbjct: 121 INPVLLRKKSERAVAAAKEPKSSSKSTRSPKKA 153

[Close]

BLAST of Lsi01G014040 vs. NCBI nr
Match: KAE9455642.1 (hypothetical protein C3L33_12460, partial [Rhododendron williamsianum])

HSP 1 Score: 258.5 bits (659), Expect = 3.7e-65
Identity = 137/152 (90.13%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           M+ GGKAK+G AGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRY++RVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKK+E+ AAAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKNEK-AAAKEPKSPSKATKSPKKA 150

[Close]

BLAST of Lsi01G014040 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-67
Identity = 134/153 (87.58%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD G K K+G AGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAA-AKEPKSPSKGTKSPKKA 153
           INP+LLPKKSE+AA+  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of Lsi01G014040 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-63
Identity = 134/177 (75.71%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MD G K K+G AGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAA-AKEPKSPSKGTKSPKKA 153
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSE+AA+  K PKSPSK TKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Lsi01G014040 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 201.8 bits (512), Expect = 3.9e-52
Identity = 110/152 (72.37%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 1   MDFGGKAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           M+  GK K+   GR+  G PK K VS+S+KAGLQFPVGRI R+LK GRY++R+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 153
           IN VLLPKKS  A    E K+     KSPKKA
Sbjct: 121 INSVLLPKKS--ATKPAEEKATKSPVKSPKKA 150

[Close]

BLAST of Lsi01G014040 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 198.0 bits (502), Expect = 5.6e-51
Identity = 110/147 (74.83%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 6   KAKRGVAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAAVL 65
           K  RG  GR+  GG +KK VS+SVKAGLQFPVGRI RYLK GRY+ R G+GAPVYLAAVL
Sbjct: 9   KPTRGAGGRK--GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVL 68

Query: 66  EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVL 125
           EYLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVL
Sbjct: 69  EYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVL 128

Query: 126 LPKKSERAAAAKEPKSPSKGTKSPKKA 153
           LPKKS  +++  E  S    TKSPKKA
Sbjct: 129 LPKKSTASSSQAEKAS---ATKSPKKA 150

[Close]

BLAST of Lsi01G014040 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 174.5 bits (441), Expect = 6.6e-44
Identity = 93/129 (72.09%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 13  GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAAVLEYLAAEV 72
           G+  G G  KK  SRS KAGLQFPVGRI R+LKNG+Y+ RVG GAPVYLAAVLEYLAAEV
Sbjct: 5   GKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEV 64

Query: 73  LELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSER 132
           LELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK   
Sbjct: 65  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKK--- 124

Query: 133 AAAAKEPKS 142
            A A +P +
Sbjct: 125 -AGASKPSA 129

The following BLAST results are available for this feature:

BLAST of Lsi01G014040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ46	1.6e-66	87.58	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q9M531	1.0e-65	88.31	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
A2Y5G8	4.7e-63	83.75	Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3...	[more]
Q6L500	4.7e-63	83.75	Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 ...	[more]
P19177	7.5e-61	83.55	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]

BLAST of Lsi01G014040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR43	3.2e-70	96.05	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A0A0KXF2	4.1e-70	95.39	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A5A7U1I6	5.4e-70	95.42	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	5.4e-70	95.42	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A2N9IZ61	1.1e-65	91.45	Histone H2A OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58509 PE=3 SV=1	[more]

BLAST of Lsi01G014040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143711.1	6.6e-70	96.05	histone H2A [Momordica charantia]	[more]
XP_004142082.1	8.6e-70	95.39	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_008447608.1	1.1e-69	95.42	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
XP_038881325.1	3.4e-66	92.81	probable histone H2A.4 [Benincasa hispida]	[more]
KAE9455642.1	3.7e-65	90.13	hypothetical protein C3L33_12460, partial [Rhododendron williamsianum]	[more]

BLAST of Lsi01G014040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	1.1e-67	87.58	histone H2A 12	[more]
AT5G02560.2	1.3e-63	75.71	histone H2A 12	[more]
AT5G59870.1	3.9e-52	72.37	histone H2A 6	[more]
AT5G27670.1	5.6e-51	74.83	histone H2A 7	[more]
AT3G20670.1	6.6e-44	72.09	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 23..45 score: 69.23 coord: 81..95 score: 73.78 coord: 109..127 score: 75.79 coord: 52..67 score: 86.43 coord: 67..80 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 12..132 e-value: 2.0E-77 score: 273.2
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 26..129 e-value: 7.40864E-65 score: 191.78
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 21..98 e-value: 6.0E-12 score: 46.0
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 101..134 e-value: 2.6E-18 score: 65.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..137 e-value: 3.2E-62 score: 210.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 14..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..152
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 9..147
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 9..147
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 31..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G014040.1	Lsi01G014040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity