Lsi01G013970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G013970
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDiaminopimelate epimerase
Locationchr01: 12112696 .. 12117237 (+)
RNA-Seq ExpressionLsi01G013970
SyntenyLsi01G013970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATATATGGGCCTGAGCATTTTATGGCCCGAGGCTAAATCTCACCAACGACGACTTCTTTCCCGTGAAACCTCCTCAACAGCCACAACACTTCCGGTCCGCACTCCGACACCACAGCGCCACCATGGCCATTGCCGCCACCATTTCTCTTCCACTTACCTCTCCATCTCCACGCTCTCTCGCTTCATTTCCTTCTCTCCGATCGTCTTTTTCTTCCACACTTCAACTGGATTCCCTTTCGAAGTATTCCCCGCGGAGAAGAAGCCCTAGGCTAACCGTCTCCGCGTCTTCCGCTGGTCTTGAAGTTACAGAGAAAGCGCCGTCCTTGTCTTTTCTTGACCGGAGAGAGAGTGGCCTCCTTCACTTTGTTAAGTACCACGGTCTCGGCAATGACTTCATCTTGGTAATGATTCTTTGAGTTTACTGTTTGATATGGCTTTTGTTTTGTTTAATCTTGAAATTGGCTGTAAATGCTTGTTCTTATCTAAAGCTTATCTGTTGGAGCTTTGGATTTGAAATGGTGGAAGTCTGAAATCGGTACTTGGTATCTTAACTTTCCGCCGTTGACGCCGGTGATGTTAATCATGGAAAATGAAACGGATTTTAATAAGAAACTAATTGGAAAGTTTTGTCGGTCAATTTTAGCTCCGTGCAGGGAAATTGTTAATTCATTACCAGCGAATCAGTCTACGTTTGTTTCTTAGTCTGGTATTGATTGCAATTGAGCTTGAATAGGTTGATAATAGGGACTCATCAGAGCCTAGGATCACCCCGGAGCAAGCTGCGAAGTTATGTGATCGAAACTTTGGGATCGGTGCTGATGGAGTAATCTTCGCTATGCCTGGCGTTAATGGTACTGATTATACCATGAGGATATTCAATTCCGACGGTAGTGAACCGGAGGTAGTTACTTGATCCCCCCCCACAACAAATAATTGTCTGTAGCTGTTATTGTATTTTTGTCAATTACGTCTGAGTCTGAATGTTTTTGCGCTTGTATCTTTTAGATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTTATTGCGGAGCTTGAGAATTTGCAGGGAAGACATAGGTATATCTTCTTTCTGTTCTACTATTACTTTATCTTTTGAGGCCATTTGTGCATACCTTCTTGTGAATTGCAACGTAGTATAGCCCTTTCAAGACACAATTAAGATTTAACTTTCTGTATTAATATTTTAAAAAACGAACGTTTGCTTTATATTCCAGGTCCTGGGCTTAGAAATCTGTTTCCTTATGTAGTTTACGTATGAAACTAATTAAATTACGATACCTTAGATCTTTTATTTCATATTTATTTATGCACTAGAATTTCTGAGCGCAGCATTATTGTTCACACTCTCGCAGTTTCACTATTCATACTGGTGCTGGTCTTATTATCCCAGAACTTCAGGATGATGGACAGGTATATTTCTATAGATTTTCTAATCTATTCAACTGCTGTTTCAATTTTTTAGAGATACTGGGAGGAGGTCTGGGAGGCTGTTGGGTTAATGCTTCTCTTTGGGCATCCGTTCATTGTTTTTTTTTGGGTAATTATCAGCTTCGTTTAGATCCTTTGGATTTAAGGCCCTTCTTGTAATTAGTTTGGAGATTTCTTTTGTGACCTTGTTTTTTGTATTCTCGTGTACGTTTTTTCAATTTTTTTCCCATCAACCCGTGGTTTCTTACACATTTTTTAAATTATCTTTTAGGCTCTTAATAGGCACATCTTTACCATTTTTCCATTGGCAAATGCAATCAGTACTTTTACAATTCAGTGCTATTATTATTATTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGTGGAATGCAATCAGCAATCTAATTTTTTGGATTCTGTGCCCATCTTAATGTACATGGAATTTCAGGTAAAAGTAGACATGGGCGAACCAATTCTCAAAGCATCAGACGTGCCTACCCGATTGACACCAACTACAGACCAATCTGTTGTTAAGGCAGACATAGAAGTAGATGGAGTTGCATGGAGCGTGACCTGTGTCAGTATGGGAAACCCCCATTGTGTAACTTTTGGCAACAAAATTGAGCAGGTATTTATTTAATATGTACGTTTTCCAACATCCCATTCACTCTTCTAAATCTTCTTAAAGTTCCTAATGTGAATTACTGTGGCTTGCCCTTTTGTTTTCTTTTCTCTTACTTAAATATAATCACTCAGCAAGTTGTATATATCGTGTACGTGATTTAGTAGATTATAGACAATATGTTACACTTTAATATTATGTAAAAGAAATTCTGAATAAACCATCATGGGTTGACCTAGTGGTAAAAAAGGAGATAAAGTCTCAATAAATGGCTAAGAGGTCATGATTCAATCTATGGTGGCCACCTACCTAGGAATTAATTTCCTACGAGTTTTCTTGACACCCAAATGTTGTAGGGTCAGGTGGGTTGTCCCGTGAGAAAGCTGACCCGGATACTTACGAATATAAAAAAATATAAAAGAAATTCTAAGTACTATGTAGGCTCCATAAATACATATATTGTATTTATCATAATTTAGTTGATTGATTGAGATGTGTTCAATGTTGTAATACTAATATTATCTATAGCCTATAGAAGAGCATTTATGAACCAATGAGTACAATTAAATTAAGAAGCAATACAAAGTTATGAGGAAGCCTCTGGTGATGGCTATGCTCCTTTGACATTTAAATAATTTCTTTCCTCCTTTGATCTAAAATAGCTTACATCAGTCTAAACTCTGCAATGCGACTTCATAGAGTCTTGAGTTACATTTGACTGACTTTAGTCATTCTGTTGGGGTACAACTATACCGTTCATTTACTGTTTGTGCTGACTTTAGCATGGTCATGAACAGAATCTGCAGGTTGATGACATAAATTTAGCTGCAATTGGTCCAAAATTTGAACATCATGAGATGTTTCCAGCACGAACAAATACAGGTTGGTTTTTTAGCAAGTTTGGAATTTCGGCCTTTTCTGGTTGATATGTTTATCTTTGAGCAAATGTGATTTTCTTCTAACCATTTAAAGGGTTTTCCCTTCCCTCTTTACGGATGTAATCTTTTTACGTTTATGTTCACTGAGATGCTCCTTCTACCCTGCTCATACAGAATTTGTGCAAGTCTTCTCCAATTCACACCTTAAAATGCGTGTGTGGGAGCGTGGTGCAGGTTCGAATTTAATATAATTAAGATAAATTTAAGTTATTAGCATATAAATATTGAATCATTTCATGACAAACCTGTGTATTTCTCAATGACACTACAGGCGCGACACTTGCTTGTGGAACCGGAGCCTGTGCGGTCGTTGTTGCAGCAGTTCTTGAAGGTCGTGCTGGACGGGTAAGAAGATCGTGTGTATCTTTTAACCACAACAGTAATAATATGATCTAATTTCATTACTATAATCGCTCAGTACGGTTATATAAACAGAGAAAGAAGCGAAAACCATCCAAATATTGTTCCTTTCTTTGCTTTAAATTTCCTAACGTTATATAAATATCTCGAGACAGAATTGCACCGTTGATCTGCCTGGAGGACCATTACAGATAGAGTGGAGCGAGCAGGACAACCATGTATACATGACGGGACCAGCCGAAGTAGTGTTCTATGGATCGGTTCCCCTACAATAAAAGCAACCTAAAGAATCAGGACAAAAGTAACTGTCAAATTTTGGCCTCAGCCGGTAGGTGGTAATTTATGAAAATGTATCTTCTGTTTGTACTTTCATTATTCTGTAATGCACAATATCTGTTCTGTGTGAATTATAACTGTCTTCTGTTTCTTCAGAAGAAAATTAATAATTTCTTTGTCTTTGCATTTGTACTGAATCAGTGTGAATATCTGTGTGTGAATTATAATTGTCGTCTGTTTCTCTGGAAACCGATGTGTCAGCAGTCGGCGTCGATTTTTGCCCAAAACCAACGTTAACCAACCGGTGCACAACCCTAGACTAC

mRNA sequence

TGAATATATGGGCCTGAGCATTTTATGGCCCGAGGCTAAATCTCACCAACGACGACTTCTTTCCCGTGAAACCTCCTCAACAGCCACAACACTTCCGGTCCGCACTCCGACACCACAGCGCCACCATGGCCATTGCCGCCACCATTTCTCTTCCACTTACCTCTCCATCTCCACGCTCTCTCGCTTCATTTCCTTCTCTCCGATCGTCTTTTTCTTCCACACTTCAACTGGATTCCCTTTCGAAGTATTCCCCGCGGAGAAGAAGCCCTAGGCTAACCGTCTCCGCGTCTTCCGCTGGTCTTGAAGTTACAGAGAAAGCGCCGTCCTTGTCTTTTCTTGACCGGAGAGAGAGTGGCCTCCTTCACTTTGTTAAGTACCACGGTCTCGGCAATGACTTCATCTTGGTTGATAATAGGGACTCATCAGAGCCTAGGATCACCCCGGAGCAAGCTGCGAAGTTATGTGATCGAAACTTTGGGATCGGTGCTGATGGAGTAATCTTCGCTATGCCTGGCGTTAATGGTACTGATTATACCATGAGGATATTCAATTCCGACGGTAGTGAACCGGAGATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTTATTGCGGAGCTTGAGAATTTGCAGGGAAGACATAGTTTCACTATTCATACTGGTGCTGGTCTTATTATCCCAGAACTTCAGGATGATGGACAGGTAAAAGTAGACATGGGCGAACCAATTCTCAAAGCATCAGACGTGCCTACCCGATTGACACCAACTACAGACCAATCTGTTGTTAAGGCAGACATAGAAGTAGATGGAGTTGCATGGAGCGTGACCTGTGTCAGTATGGGAAACCCCCATTGTGTAACTTTTGGCAACAAAATTGAGCAGAATCTGCAGGTTGATGACATAAATTTAGCTGCAATTGGTCCAAAATTTGAACATCATGAGATGTTTCCAGCACGAACAAATACAGAATTTGTGCAAGTCTTCTCCAATTCACACCTTAAAATGCGTGTGTGGGAGCGTGGTGCAGGCGCGACACTTGCTTGTGGAACCGGAGCCTGTGCGGTCGTTGTTGCAGCAGTTCTTGAAGGTCGTGCTGGACGGAATTGCACCGTTGATCTGCCTGGAGGACCATTACAGATAGAGTGGAGCGAGCAGGACAACCATGTATACATGACGGGACCAGCCGAAGTAGTGTTCTATGGATCGGTTCCCCTACAATAAAAGCAACCTAAAGAATCAGGACAAAAGTAACTGTCAAATTTTGGCCTCAGCCGGTAGGTGGTAATTTATGAAAATGTATCTTCTGTTTGTACTTTCATTATTCTGTAATGCACAATATCTGTTCTGTGTGAATTATAACTGTCTTCTGTTTCTTCAGAAGAAAATTAATAATTTCTTTGTCTTTGCATTTGTACTGAATCAGTGTGAATATCTGTGTGTGAATTATAATTGTCGTCTGTTTCTCTGGAAACCGATGTGTCAGCAGTCGGCGTCGATTTTTGCCCAAAACCAACGTTAACCAACCGGTGCACAACCCTAGACTAC

Coding sequence (CDS)

ATGGCCATTGCCGCCACCATTTCTCTTCCACTTACCTCTCCATCTCCACGCTCTCTCGCTTCATTTCCTTCTCTCCGATCGTCTTTTTCTTCCACACTTCAACTGGATTCCCTTTCGAAGTATTCCCCGCGGAGAAGAAGCCCTAGGCTAACCGTCTCCGCGTCTTCCGCTGGTCTTGAAGTTACAGAGAAAGCGCCGTCCTTGTCTTTTCTTGACCGGAGAGAGAGTGGCCTCCTTCACTTTGTTAAGTACCACGGTCTCGGCAATGACTTCATCTTGGTTGATAATAGGGACTCATCAGAGCCTAGGATCACCCCGGAGCAAGCTGCGAAGTTATGTGATCGAAACTTTGGGATCGGTGCTGATGGAGTAATCTTCGCTATGCCTGGCGTTAATGGTACTGATTATACCATGAGGATATTCAATTCCGACGGTAGTGAACCGGAGATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTTATTGCGGAGCTTGAGAATTTGCAGGGAAGACATAGTTTCACTATTCATACTGGTGCTGGTCTTATTATCCCAGAACTTCAGGATGATGGACAGGTAAAAGTAGACATGGGCGAACCAATTCTCAAAGCATCAGACGTGCCTACCCGATTGACACCAACTACAGACCAATCTGTTGTTAAGGCAGACATAGAAGTAGATGGAGTTGCATGGAGCGTGACCTGTGTCAGTATGGGAAACCCCCATTGTGTAACTTTTGGCAACAAAATTGAGCAGAATCTGCAGGTTGATGACATAAATTTAGCTGCAATTGGTCCAAAATTTGAACATCATGAGATGTTTCCAGCACGAACAAATACAGAATTTGTGCAAGTCTTCTCCAATTCACACCTTAAAATGCGTGTGTGGGAGCGTGGTGCAGGCGCGACACTTGCTTGTGGAACCGGAGCCTGTGCGGTCGTTGTTGCAGCAGTTCTTGAAGGTCGTGCTGGACGGAATTGCACCGTTGATCTGCCTGGAGGACCATTACAGATAGAGTGGAGCGAGCAGGACAACCATGTATACATGACGGGACCAGCCGAAGTAGTGTTCTATGGATCGGTTCCCCTACAATAA

Protein sequence

MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTVSASSAGLEVTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGSVPLQ
Homology
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BLAST of Lsi01G013970 vs. ExPASy Swiss-Prot
Match: Q9LFG2 (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPF PE=1 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 9.0e-153
Identity = 255/319 (79.94%), Postives = 286/319 (89.66%), Query Frame = 0 

Query: 46  RSPRLTVSASSAGLEVT-EKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRI 105
           +SP L VSA+++   VT EK    SFLD++E+G+LHFVKYHGLGNDFILVDNRDSSEP+I
Sbjct: 44  KSPSLRVSAAASMDAVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKI 103

Query: 106 TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 165
           T EQAAKLCDRNFG+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAE
Sbjct: 104 TQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAE 163

Query: 166 LENLQGRHSFTIHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADI 225
           LENLQG+HSFTIHTGAGLI+PE+QDDGQVKVDMG PILKA DVPT+L+    ++VV+A++
Sbjct: 164 LENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAEL 223

Query: 226 EVDGVAWSVTCVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQ 285
            VDGV+W+VTCVSMGNPHC+TFG K   NL+VDD+NL  IGPKFEHHEMFPARTNTEFV+
Sbjct: 224 VVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVE 283

Query: 286 VFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQD 345
           V S SHLKMRVWERGAGATLACGTGACA+VVAAVLEGRA R CTVDLPGGPL+IEW ++D
Sbjct: 284 VLSRSHLKMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQED 343

Query: 346 NHVYMTGPAEVVFYGSVPL 364
           NH+YMTGPAE VFYGS  L
Sbjct: 344 NHIYMTGPAEAVFYGSALL 362

[Close]
BLAST of Lsi01G013970 vs. ExPASy Swiss-Prot
Match: Q2QNF7 (Diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAPF PE=2 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 9.4e-142
Identity = 237/317 (74.76%), Postives = 267/317 (84.23%), Query Frame = 0 

Query: 45  RRSPRLTVSASSAGLEVTEKAPSLSFLDRRES-GLLHFVKYHGLGNDFILVDNRDSSEPR 104
           R +P      ++  +     A + +FL+RRES   LHFVKY GLGNDFI+VDNRDS+ P+
Sbjct: 35  RGNPTARRCVAAMAVSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDSAVPK 94

Query: 105 ITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIA 164
           +TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIA
Sbjct: 95  VTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIA 154

Query: 165 ELENLQGRHSFTIHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKAD 224
           ELENLQG HSF IHTGAGLIIPE+Q+DG+VKVDMG+PIL   D+PT+L  T +++VV+AD
Sbjct: 155 ELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQAD 214

Query: 225 IEVDGVAWSVTCVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFV 284
           + VDG  W VTCVSMGNPHCVTFG K  + L VDD+ L+ IGPKFEHHEMFPARTNTEFV
Sbjct: 215 LAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFV 274

Query: 285 QVFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQ 344
           +V S SHLKMRVWERGAGATLACGTGACAVVVAAVLEGRA R C VDLPGGPL+IEW E 
Sbjct: 275 EVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWRED 334

Query: 345 DNHVYMTGPAEVVFYGS 361
           DNH+YMTGPAE VFYGS
Sbjct: 335 DNHIYMTGPAEAVFYGS 351

[Close]
BLAST of Lsi01G013970 vs. ExPASy Swiss-Prot
Match: A2ZLS4 (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=DAPF PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 2.3e-140
Identity = 241/353 (68.27%), Postives = 283/353 (80.17%), Query Frame = 0 

Query: 15  SPRSLASFPSLRSSFSSTLQLDSLSKYSPRRR------SPRLTVSASSAGLEVTEKAPSL 74
           S  + A+  ++ ++ ++  +L +    +P RR      +P      ++  +     A + 
Sbjct: 2   SSATAAATATIAAAAAAAAKLAATPAPAPSRRRLTLRGNPTARRCVAAMAVSTPRSAAAA 61

Query: 75  SFLDRRES-GLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFA 134
           +FL+RRES   LHFVKY GLGNDFI++DNRDS+ P++TPE+AAKLCDRNFG+GADGVIF 
Sbjct: 62  AFLERRESERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV 121

Query: 135 MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGAGLIIPEL 194
           MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQG HSF IHTGAGLIIPE+
Sbjct: 122 MPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEI 181

Query: 195 QDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFG 254
           Q+DG+VKVDMG+PIL   D+PT+L  T +++VV+AD+ VDG  W VTCVSMGNPHCVTFG
Sbjct: 182 QNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFG 241

Query: 255 NKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGAGATLACG 314
            K  + L VDD+ L+ IGPKFEHHEMFPARTNTEFV+V S SHLKMRVWERGAGATLACG
Sbjct: 242 TKELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACG 301

Query: 315 TGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 361
           TGACAVVVAAVLEGRA R C VDLPGGPL+IEW E DNH+YMTGPAE VFYGS
Sbjct: 302 TGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 354

[Close]
BLAST of Lsi01G013970 vs. ExPASy Swiss-Prot
Match: P74667 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=dapF PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.3e-106
Identity = 187/285 (65.61%), Postives = 218/285 (76.49%), Query Frame = 0 

Query: 79  LHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
           L F KYHGLGNDFILVDNR S+EP +TP+QA +LCDR+FGIGADGVIFA+PG  GTDYTM
Sbjct: 3   LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTM 62

Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGAGLIIPELQDDGQVKVDMG 198
           RIFNSDGSEPEMCGNG+RC A+F+A+LE ++ + ++ IHT AG+I P+L  DGQVKVDMG
Sbjct: 63  RIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK-TYRIHTLAGVITPQLLADGQVKVDMG 122

Query: 199 EPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFGNKIEQNLQVDD 258
           EP L A  +PT L P   + VV   + V G  W+VTCVSMGNPHC+TF +       VD 
Sbjct: 123 EPQLLAELIPTTLAP-AGEKVVDLPLAVAGQTWAVTCVSMGNPHCLTFVD------DVDS 182

Query: 259 INLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGAGATLACGTGACAVVVAAV 318
           +NL  IGP FEHH  F  RTNTEF+QV  +  LKMRVWERGAG TLACGTGACA VVAAV
Sbjct: 183 LNLTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAAV 242

Query: 319 LEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGSVPL 364
           L GR  R CTV+LPGG L+IEWS QDN +YMTGPA+ VF G   +
Sbjct: 243 LTGRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQAEI 279

[Close]
BLAST of Lsi01G013970 vs. ExPASy Swiss-Prot
Match: Q8YVD0 (Diaminopimelate epimerase 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=dapF1 PE=3 SV=2)

HSP 1 Score: 384.4 bits (986), Expect = 1.4e-105
Identity = 185/284 (65.14%), Postives = 218/284 (76.76%), Query Frame = 0 

Query: 79  LHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
           + F KYHGLGNDFIL+DNR S  P ITPE+A ++CDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3   IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTM 62

Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENL-QGRHSFTIHTGAGLIIPELQDDGQVKVDM 198
           RIFNSDGSEPEMCGNG+RC A F+A+LE L + + ++ IHT AG+I P+L  DGQ+KVDM
Sbjct: 63  RIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVDM 122

Query: 199 GEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGNPHCVTFGNKIEQNLQVD 258
           G P L A ++PT L    D  V+   +EV+G  W VTCVSMGNPHC+TF   +E    V 
Sbjct: 123 GLPRLLAGEIPTTL-GAADGKVINQPLEVEGQTWEVTCVSMGNPHCITF---VE---DVA 182

Query: 259 DINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGAGATLACGTGACAVVVAA 318
            I L  IGPKFEHH  FP RTNTEF+QV S  +LKMRVWERGAG TLACGTGACA +VAA
Sbjct: 183 AIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAA 242

Query: 319 VLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGSV 362
           VL GR+ R  TV+LPGGPL+IEWSE D  +YMTGPA+ VF G +
Sbjct: 243 VLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279

[Close]
BLAST of Lsi01G013970 vs. ExPASy TrEMBL
Match: A0A5A7TV60 (Diaminopimelate epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001640 PE=3 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 5.6e-198
Identity = 347/363 (95.59%), Postives = 352/363 (96.97%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTVSASSAGLE 60
           MAIA TISLPLTSPS RSLAS PSLR SF+STLQLDSL KY  RRRSPRL+VSASSAGLE
Sbjct: 1   MAIATTISLPLTSPSSRSLASIPSLRLSFTSTLQLDSLPKYFARRRSPRLSVSASSAGLE 60

Query: 61  VTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120
           VTEKAPSLSFLD RESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG
Sbjct: 61  VTEKAPSLSFLDHRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120

Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 180
           ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFT+HTGA
Sbjct: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGA 180

Query: 181 GLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGN 240
           GLIIPELQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGN
Sbjct: 181 GLIIPELQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGN 240

Query: 241 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 300
           PHCVTFGNKIEQNLQV+DINLAAIGPKFEHHEMFPARTNTEFVQV SNSHLKMRVWERGA
Sbjct: 241 PHCVTFGNKIEQNLQVEDINLAAIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERGA 300

Query: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360
           GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS
Sbjct: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360

Query: 361 VPL 364
           VPL
Sbjct: 361 VPL 363

[Close]
BLAST of Lsi01G013970 vs. ExPASy TrEMBL
Match: A0A1S3BHL3 (Diaminopimelate epimerase OS=Cucumis melo OX=3656 GN=LOC103489934 PE=3 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 5.6e-198
Identity = 347/363 (95.59%), Postives = 352/363 (96.97%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTVSASSAGLE 60
           MAIA TISLPLTSPS RSLAS PSLR SF+STLQLDSL KY  RRRSPRL+VSASSAGLE
Sbjct: 1   MAIATTISLPLTSPSSRSLASIPSLRLSFTSTLQLDSLPKYFARRRSPRLSVSASSAGLE 60

Query: 61  VTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120
           VTEKAPSLSFLD RESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG
Sbjct: 61  VTEKAPSLSFLDHRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120

Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 180
           ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFT+HTGA
Sbjct: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGA 180

Query: 181 GLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGN 240
           GLIIPELQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGN
Sbjct: 181 GLIIPELQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGN 240

Query: 241 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 300
           PHCVTFGNKIEQNLQV+DINLAAIGPKFEHHEMFPARTNTEFVQV SNSHLKMRVWERGA
Sbjct: 241 PHCVTFGNKIEQNLQVEDINLAAIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERGA 300

Query: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360
           GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS
Sbjct: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360

Query: 361 VPL 364
           VPL
Sbjct: 361 VPL 363

[Close]
BLAST of Lsi01G013970 vs. ExPASy TrEMBL
Match: A0A0A0L244 (Diaminopimelate epimerase OS=Cucumis sativus OX=3659 GN=Csa_4G293310 PE=3 SV=1)

HSP 1 Score: 691.8 bits (1784), Expect = 1.5e-195
Identity = 342/364 (93.96%), Postives = 350/364 (96.15%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTVSASSAGLE 60
           MA+A  ISLPLTSPS RSLAS PSLR SF+S+LQLDSL KYS R RSPRL+VSA+SAGLE
Sbjct: 1   MAVATIISLPLTSPSSRSLASIPSLRLSFTSSLQLDSLPKYSARGRSPRLSVSATSAGLE 60

Query: 61  VTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120
           VTEKAPS SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG
Sbjct: 61  VTEKAPSFSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120

Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 180
           ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFT+HTGA
Sbjct: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGA 180

Query: 181 GLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGN 240
           GLIIPELQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGN
Sbjct: 181 GLIIPELQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGN 240

Query: 241 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 300
           PHCVTF NKIEQNLQVD INLAAIGPKFEHHEMFPARTNTEFVQV SNSHLKMRVWERGA
Sbjct: 241 PHCVTFSNKIEQNLQVDGINLAAIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERGA 300

Query: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360
           GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSE+DNHVYMTGPAEVVFYGS
Sbjct: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEEDNHVYMTGPAEVVFYGS 360

Query: 361 VPLQ 365
           VPLQ
Sbjct: 361 VPLQ 364

[Close]
BLAST of Lsi01G013970 vs. ExPASy TrEMBL
Match: A0A6J1GFR9 (Diaminopimelate epimerase OS=Cucurbita moschata OX=3662 GN=LOC111453781 PE=3 SV=1)

HSP 1 Score: 689.9 bits (1779), Expect = 5.8e-195
Identity = 347/370 (93.78%), Postives = 353/370 (95.41%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTV------SA 60
           MAIAATISLP +SPS RSLAS  SLRSS SSTLQLDS SKYS RRRSPRL+V      SA
Sbjct: 1   MAIAATISLPFSSPSRRSLASIFSLRSSVSSTLQLDSFSKYSARRRSPRLSVSASSASSA 60

Query: 61  SSAGLEVTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCD 120
           SSAGLEVTEKA S SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCD
Sbjct: 61  SSAGLEVTEKALSSSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCD 120

Query: 121 RNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSF 180
           RNFGIGADGVIFA+PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSF
Sbjct: 121 RNFGIGADGVIFALPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSF 180

Query: 181 TIHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVT 240
           TIHTGAGLI+P+LQD+G VKVDMGEPILKASDVPTRLTP TDQSVVKADIEVDGVAWSVT
Sbjct: 181 TIHTGAGLIVPQLQDNGLVKVDMGEPILKASDVPTRLTPNTDQSVVKADIEVDGVAWSVT 240

Query: 241 CVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMR 300
           CVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMR
Sbjct: 241 CVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMR 300

Query: 301 VWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAE 360
           VWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAE
Sbjct: 301 VWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAE 360

Query: 361 VVFYGSVPLQ 365
           VVFYGSVPLQ
Sbjct: 361 VVFYGSVPLQ 370

[Close]
BLAST of Lsi01G013970 vs. ExPASy TrEMBL
Match: A0A6J1IPE7 (Diaminopimelate epimerase OS=Cucurbita maxima OX=3661 GN=LOC111477617 PE=3 SV=1)

HSP 1 Score: 689.1 bits (1777), Expect = 9.9e-195
Identity = 343/364 (94.23%), Postives = 350/364 (96.15%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTVSASSAGLE 60
           MAI+ TISLP TSPS RSLAS   LRSS SSTLQLDSLSKYS RRRSPRL+VSASSAGLE
Sbjct: 39  MAISTTISLPFTSPSRRSLASISFLRSSVSSTLQLDSLSKYSARRRSPRLSVSASSAGLE 98

Query: 61  VTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120
           VTEKA S SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG
Sbjct: 99  VTEKALSSSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 158

Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 180
           ADGVIFA+PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA
Sbjct: 159 ADGVIFALPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 218

Query: 181 GLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGN 240
           GLI+P+LQD+G VKVDMGEPILKASDVPTRLTP  DQSVVK+DIEVDGVAWSVTCVSMGN
Sbjct: 219 GLIVPQLQDNGLVKVDMGEPILKASDVPTRLTPNKDQSVVKSDIEVDGVAWSVTCVSMGN 278

Query: 241 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 300
           PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA
Sbjct: 279 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 338

Query: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360
           GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQ NHVYMTGPAEVVFYGS
Sbjct: 339 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQANHVYMTGPAEVVFYGS 398

Query: 361 VPLQ 365
           VPLQ
Sbjct: 399 VPLQ 402

[Close]
BLAST of Lsi01G013970 vs. NCBI nr
Match: XP_038880931.1 (diaminopimelate epimerase, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 709.1 bits (1829), Expect = 1.9e-200
Identity = 350/364 (96.15%), Postives = 356/364 (97.80%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTVSASSAGLE 60
           MAIA TIS PLTSPSPRSLASFPSLRSSFSSTLQLDSLSK+S +RRSPRLT+SASSAGLE
Sbjct: 1   MAIAGTISFPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKHSAQRRSPRLTISASSAGLE 60

Query: 61  VTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120
           VTEKAPS SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG
Sbjct: 61  VTEKAPSSSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120

Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 180
           ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQG HSFT+HTGA
Sbjct: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFTVHTGA 180

Query: 181 GLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGN 240
           GLIIPELQD+GQVKVDMGEPILKASDVPTRL PTTDQSVVKADIEVDGVAWSVTCVSMGN
Sbjct: 181 GLIIPELQDNGQVKVDMGEPILKASDVPTRLAPTTDQSVVKADIEVDGVAWSVTCVSMGN 240

Query: 241 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 300
           PHCVTFGNKI+QNLQVDDINLAAIGPKFEHH MFPARTNTEFVQVFSNSHLKMRVWERGA
Sbjct: 241 PHCVTFGNKIDQNLQVDDINLAAIGPKFEHHVMFPARTNTEFVQVFSNSHLKMRVWERGA 300

Query: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360
           GATLACGTGACAVVVAAVLEG AGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS
Sbjct: 301 GATLACGTGACAVVVAAVLEGHAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360

Query: 361 VPLQ 365
           VPLQ
Sbjct: 361 VPLQ 364

[Close]
BLAST of Lsi01G013970 vs. NCBI nr
Match: XP_008447504.1 (PREDICTED: diaminopimelate epimerase, chloroplastic [Cucumis melo] >KAA0047342.1 diaminopimelate epimerase [Cucumis melo var. makuwa])

HSP 1 Score: 699.9 bits (1805), Expect = 1.2e-197
Identity = 347/363 (95.59%), Postives = 352/363 (96.97%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTVSASSAGLE 60
           MAIA TISLPLTSPS RSLAS PSLR SF+STLQLDSL KY  RRRSPRL+VSASSAGLE
Sbjct: 1   MAIATTISLPLTSPSSRSLASIPSLRLSFTSTLQLDSLPKYFARRRSPRLSVSASSAGLE 60

Query: 61  VTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120
           VTEKAPSLSFLD RESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG
Sbjct: 61  VTEKAPSLSFLDHRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120

Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 180
           ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFT+HTGA
Sbjct: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGA 180

Query: 181 GLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGN 240
           GLIIPELQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGN
Sbjct: 181 GLIIPELQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGN 240

Query: 241 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 300
           PHCVTFGNKIEQNLQV+DINLAAIGPKFEHHEMFPARTNTEFVQV SNSHLKMRVWERGA
Sbjct: 241 PHCVTFGNKIEQNLQVEDINLAAIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERGA 300

Query: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360
           GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS
Sbjct: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360

Query: 361 VPL 364
           VPL
Sbjct: 361 VPL 363

[Close]
BLAST of Lsi01G013970 vs. NCBI nr
Match: XP_004142088.1 (diaminopimelate epimerase, chloroplastic [Cucumis sativus] >KGN54221.1 hypothetical protein Csa_017980 [Cucumis sativus])

HSP 1 Score: 691.8 bits (1784), Expect = 3.2e-195
Identity = 342/364 (93.96%), Postives = 350/364 (96.15%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTVSASSAGLE 60
           MA+A  ISLPLTSPS RSLAS PSLR SF+S+LQLDSL KYS R RSPRL+VSA+SAGLE
Sbjct: 1   MAVATIISLPLTSPSSRSLASIPSLRLSFTSSLQLDSLPKYSARGRSPRLSVSATSAGLE 60

Query: 61  VTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120
           VTEKAPS SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG
Sbjct: 61  VTEKAPSFSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120

Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 180
           ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFT+HTGA
Sbjct: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTVHTGA 180

Query: 181 GLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGN 240
           GLIIPELQDDGQVKVDMGEPILKA+DVPTRLTPT DQSVVKA IEVDGVAWSVTCVSMGN
Sbjct: 181 GLIIPELQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGN 240

Query: 241 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 300
           PHCVTF NKIEQNLQVD INLAAIGPKFEHHEMFPARTNTEFVQV SNSHLKMRVWERGA
Sbjct: 241 PHCVTFSNKIEQNLQVDGINLAAIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERGA 300

Query: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360
           GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSE+DNHVYMTGPAEVVFYGS
Sbjct: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEEDNHVYMTGPAEVVFYGS 360

Query: 361 VPLQ 365
           VPLQ
Sbjct: 361 VPLQ 364

[Close]
BLAST of Lsi01G013970 vs. NCBI nr
Match: XP_022950776.1 (diaminopimelate epimerase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 689.9 bits (1779), Expect = 1.2e-194
Identity = 347/370 (93.78%), Postives = 353/370 (95.41%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTV------SA 60
           MAIAATISLP +SPS RSLAS  SLRSS SSTLQLDS SKYS RRRSPRL+V      SA
Sbjct: 1   MAIAATISLPFSSPSRRSLASIFSLRSSVSSTLQLDSFSKYSARRRSPRLSVSASSASSA 60

Query: 61  SSAGLEVTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCD 120
           SSAGLEVTEKA S SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCD
Sbjct: 61  SSAGLEVTEKALSSSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCD 120

Query: 121 RNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSF 180
           RNFGIGADGVIFA+PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSF
Sbjct: 121 RNFGIGADGVIFALPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSF 180

Query: 181 TIHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVT 240
           TIHTGAGLI+P+LQD+G VKVDMGEPILKASDVPTRLTP TDQSVVKADIEVDGVAWSVT
Sbjct: 181 TIHTGAGLIVPQLQDNGLVKVDMGEPILKASDVPTRLTPNTDQSVVKADIEVDGVAWSVT 240

Query: 241 CVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMR 300
           CVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMR
Sbjct: 241 CVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMR 300

Query: 301 VWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAE 360
           VWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAE
Sbjct: 301 VWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAE 360

Query: 361 VVFYGSVPLQ 365
           VVFYGSVPLQ
Sbjct: 361 VVFYGSVPLQ 370

[Close]
BLAST of Lsi01G013970 vs. NCBI nr
Match: XP_022977248.1 (diaminopimelate epimerase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 689.1 bits (1777), Expect = 2.0e-194
Identity = 343/364 (94.23%), Postives = 350/364 (96.15%), Query Frame = 0 

Query: 1   MAIAATISLPLTSPSPRSLASFPSLRSSFSSTLQLDSLSKYSPRRRSPRLTVSASSAGLE 60
           MAI+ TISLP TSPS RSLAS   LRSS SSTLQLDSLSKYS RRRSPRL+VSASSAGLE
Sbjct: 39  MAISTTISLPFTSPSRRSLASISFLRSSVSSTLQLDSLSKYSARRRSPRLSVSASSAGLE 98

Query: 61  VTEKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 120
           VTEKA S SFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG
Sbjct: 99  VTEKALSSSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAAKLCDRNFGIG 158

Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 180
           ADGVIFA+PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA
Sbjct: 159 ADGVIFALPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGRHSFTIHTGA 218

Query: 181 GLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADIEVDGVAWSVTCVSMGN 240
           GLI+P+LQD+G VKVDMGEPILKASDVPTRLTP  DQSVVK+DIEVDGVAWSVTCVSMGN
Sbjct: 219 GLIVPQLQDNGLVKVDMGEPILKASDVPTRLTPNKDQSVVKSDIEVDGVAWSVTCVSMGN 278

Query: 241 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 300
           PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA
Sbjct: 279 PHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQVFSNSHLKMRVWERGA 338

Query: 301 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQDNHVYMTGPAEVVFYGS 360
           GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQ NHVYMTGPAEVVFYGS
Sbjct: 339 GATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQANHVYMTGPAEVVFYGS 398

Query: 361 VPLQ 365
           VPLQ
Sbjct: 399 VPLQ 402

[Close]
BLAST of Lsi01G013970 vs. TAIR 10
Match: AT3G53580.1 (diaminopimelate epimerase family protein )

HSP 1 Score: 541.2 bits (1393), Expect = 6.4e-154
Identity = 255/319 (79.94%), Postives = 286/319 (89.66%), Query Frame = 0 

Query: 46  RSPRLTVSASSAGLEVT-EKAPSLSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRI 105
           +SP L VSA+++   VT EK    SFLD++E+G+LHFVKYHGLGNDFILVDNRDSSEP+I
Sbjct: 44  KSPSLRVSAAASMDAVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKI 103

Query: 106 TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 165
           T EQAAKLCDRNFG+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAE
Sbjct: 104 TQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAE 163

Query: 166 LENLQGRHSFTIHTGAGLIIPELQDDGQVKVDMGEPILKASDVPTRLTPTTDQSVVKADI 225
           LENLQG+HSFTIHTGAGLI+PE+QDDGQVKVDMG PILKA DVPT+L+    ++VV+A++
Sbjct: 164 LENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAEL 223

Query: 226 EVDGVAWSVTCVSMGNPHCVTFGNKIEQNLQVDDINLAAIGPKFEHHEMFPARTNTEFVQ 285
            VDGV+W+VTCVSMGNPHC+TFG K   NL+VDD+NL  IGPKFEHHEMFPARTNTEFV+
Sbjct: 224 VVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVE 283

Query: 286 VFSNSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEQD 345
           V S SHLKMRVWERGAGATLACGTGACA+VVAAVLEGRA R CTVDLPGGPL+IEW ++D
Sbjct: 284 VLSRSHLKMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQED 343

Query: 346 NHVYMTGPAEVVFYGSVPL 364
           NH+YMTGPAE VFYGS  L
Sbjct: 344 NHIYMTGPAEAVFYGSALL 362

The following BLAST results are available for this feature:
BLAST of Lsi01G013970 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFG29.0e-15379.94Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPF... [more]
Q2QNF79.4e-14274.76Diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
A2ZLS42.3e-14068.27Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica ... [more]
P746671.3e-10665.61Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111... [more]
Q8YVD01.4e-10565.14Diaminopimelate epimerase 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 25... [more]
BLAST of Lsi01G013970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TV605.6e-19895.59Diaminopimelate epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A1S3BHL35.6e-19895.59Diaminopimelate epimerase OS=Cucumis melo OX=3656 GN=LOC103489934 PE=3 SV=1[more]
A0A0A0L2441.5e-19593.96Diaminopimelate epimerase OS=Cucumis sativus OX=3659 GN=Csa_4G293310 PE=3 SV=1[more]
A0A6J1GFR95.8e-19593.78Diaminopimelate epimerase OS=Cucurbita moschata OX=3662 GN=LOC111453781 PE=3 SV=... [more]
A0A6J1IPE79.9e-19594.23Diaminopimelate epimerase OS=Cucurbita maxima OX=3661 GN=LOC111477617 PE=3 SV=1[more]
BLAST of Lsi01G013970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880931.11.9e-20096.15diaminopimelate epimerase, chloroplastic-like [Benincasa hispida][more]
XP_008447504.11.2e-19795.59PREDICTED: diaminopimelate epimerase, chloroplastic [Cucumis melo] >KAA0047342.1... [more]
XP_004142088.13.2e-19593.96diaminopimelate epimerase, chloroplastic [Cucumis sativus] >KGN54221.1 hypotheti... [more]
XP_022950776.11.2e-19493.78diaminopimelate epimerase, chloroplastic-like [Cucurbita moschata][more]
XP_022977248.12.0e-19494.23diaminopimelate epimerase, chloroplastic-like [Cucurbita maxima][more]
BLAST of Lsi01G013970 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G53580.16.4e-15479.94diaminopimelate epimerase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001653Diaminopimelate epimerase, DapFPFAMPF01678DAP_epimerasecoord: 235..355
e-value: 2.1E-30
score: 105.3
coord: 81..201
e-value: 3.1E-35
score: 121.0
IPR001653Diaminopimelate epimerase, DapFTIGRFAMTIGR00652TIGR00652coord: 80..360
e-value: 2.7E-95
score: 316.8
IPR001653Diaminopimelate epimerase, DapFPANTHERPTHR31689DIAMINOPIMELATE EPIMERASE, CHLOROPLASTICcoord: 45..362
IPR001653Diaminopimelate epimerase, DapFHAMAPMF_00197DAP_epimerasecoord: 79..363
score: 38.007675
NoneNo IPR availableGENE3D3.10.310.10Diaminopimelate Epimerase; Chain A, domain 1coord: 214..347
e-value: 2.8E-43
score: 149.0
NoneNo IPR availableGENE3D3.10.310.10Diaminopimelate Epimerase; Chain A, domain 1coord: 53..211
e-value: 4.9E-61
score: 206.6
NoneNo IPR availablePANTHERPTHR31689:SF0DIAMINOPIMELATE EPIMERASE, CHLOROPLASTICcoord: 45..362
NoneNo IPR availableSUPERFAMILY54506Diaminopimelate epimerase-likecoord: 79..208
NoneNo IPR availableSUPERFAMILY54506Diaminopimelate epimerase-likecoord: 222..360
IPR018510Diaminopimelate epimerase, active sitePROSITEPS01326DAP_EPIMERASEcoord: 142..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G013970.1Lsi01G013970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008837 diaminopimelate epimerase activity