Lsi01G013940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G013940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SLOW GREEN 1, chloroplastic-like
Location	chr01: 12087831 .. 12089082 (-)
RNA-Seq Expression	Lsi01G013940
Synteny	Lsi01G013940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTCGAATTGGGTTATTTTGGCAAAGCTTTATGGGCTTTTGGAATGGGTCCAAAGCCCAAATAGAGTTGAATAGTTGAGATTTGGGCCTTTTGGAATAAAGCTAAACACCTTGTAAACCTCCGGGCCAGAGATGACTTGAAAATCGCTTGTTCTCTTCACAGAGCATCACGAAGGTAACAGCCATGGAGTCTCTACCTACACTTCACCACCGTCGTAATCCTTCTCACCAACTTCTTTCCTTCAGCCACCGTCTCCCTTCATTCTCTAAACCCATTTCTTCTCTCTCCTTCCGGTCTCCGCCGCCGTCTCGCCTCCGTTCCTCTTTCAGGTCGTTGTCTGTTAAAGCCTCATCCTCTCCGTCGACCTCCGACGAAACCCTTCGGAACGCTGAATCTTCCATTTCCGATACCACGAATGGCGGCCTTCTGTCGGGATTTCTCAAAACCGCTTGTATCTCCGTTGCCGCTGCTGCATTCTTCTTCCTTCGCTTTGACCATCGACGCGCTGTTGCTGTTGCTGTCCCGGTGGCGCCGGAGACGACGGAGTCTACTGAGGAATCGACGGAATTTGAGGAAAATGAGAGCGTTGTGGAAGAGAAACAGACAGATGATTCGAATGATGTCGAAGCCCTTCGATCCCTCGTTGAGGAGAATGTAAAATCAGGTAAACTCCCTGAAGCGATTGAAGCCCTAAACCGTTTGATCGAACTTGAACCAAATGACCGTGAGTTGCCATTGCTAAGAGCCAATTTCCGTAGCTATATGGGTGAGCTCGAATTGGCGAAAAATGAATTTGAGGAGATTTTAGCGGAAGACCCATTTCGTGTTGAGGCTTACCATGGCCTTGCAATGGTGTCGGAGCAATTAAATGATAATTCATTGAAGGACGTTGCTAAAAGGATCGAAGAGGCAATGGAGAAATGCAAGAAGCAGAATGACAAGTCAGATATCAGGGATTTCAAGCTCTTGGTTGCGCAAATTAAGGTAATGGAGGGAAGTTATTTTGATGCATTGAAAGCTTATCAAGAACTTGTGAGGGAGGAGCCAAGGGATTTTAGGCCGTATCTATGTCAGGGGATCATATATACTCTTTTAAGGAAGAATGAGGAGGCTGAGAAACAGTTTGAGAAATTTAGGAGACTTGTTCCAAAAAACCATCCTTACAAAGAGTACTTTGATGAAAACATGTTTGCAACAAAGCTTTTTGCTCAGAAAATAGAAAAGGAGGGAGCTGGTTTGAAAAGCTGA

mRNA sequence

ATGTGTTCGAATTGGGTTATTTTGGCAAAGCTTTATGGGCTTTTGGAATGGAGCATCACGAAGGTAACAGCCATGGAGTCTCTACCTACACTTCACCACCGTCGTAATCCTTCTCACCAACTTCTTTCCTTCAGCCACCGTCTCCCTTCATTCTCTAAACCCATTTCTTCTCTCTCCTTCCGGTCTCCGCCGCCGTCTCGCCTCCGTTCCTCTTTCAGGTCGTTGTCTGTTAAAGCCTCATCCTCTCCGTCGACCTCCGACGAAACCCTTCGGAACGCTGAATCTTCCATTTCCGATACCACGAATGGCGGCCTTCTGTCGGGATTTCTCAAAACCGCTTGTATCTCCGTTGCCGCTGCTGCATTCTTCTTCCTTCGCTTTGACCATCGACGCGCTGTTGCTGTTGCTGTCCCGGTGGCGCCGGAGACGACGGAGTCTACTGAGGAATCGACGGAATTTGAGGAAAATGAGAGCGTTGTGGAAGAGAAACAGACAGATGATTCGAATGATGTCGAAGCCCTTCGATCCCTCGTTGAGGAGAATGTAAAATCAGGTAAACTCCCTGAAGCGATTGAAGCCCTAAACCGTTTGATCGAACTTGAACCAAATGACCGTGAGTTGCCATTGCTAAGAGCCAATTTCCGTAGCTATATGGGTGAGCTCGAATTGGCGAAAAATGAATTTGAGGAGATTTTAGCGGAAGACCCATTTCGTGTTGAGGCTTACCATGGCCTTGCAATGGTGTCGGAGCAATTAAATGATAATTCATTGAAGGACGTTGCTAAAAGGATCGAAGAGGCAATGGAGAAATGCAAGAAGCAGAATGACAAGTCAGATATCAGGGATTTCAAGCTCTTGGTTGCGCAAATTAAGGTAATGGAGGGAAGTTATTTTGATGCATTGAAAGCTTATCAAGAACTTGTGAGGGAGGAGCCAAGGGATTTTAGGCCGTATCTATGTCAGGGGATCATATATACTCTTTTAAGGAAGAATGAGGAGGCTGAGAAACAGTTTGAGAAATTTAGGAGACTTGTTCCAAAAAACCATCCTTACAAAGAGTACTTTGATGAAAACATGTTTGCAACAAAGCTTTTTGCTCAGAAAATAGAAAAGGAGGGAGCTGGTTTGAAAAGCTGA

Coding sequence (CDS)

ATGTGTTCGAATTGGGTTATTTTGGCAAAGCTTTATGGGCTTTTGGAATGGAGCATCACGAAGGTAACAGCCATGGAGTCTCTACCTACACTTCACCACCGTCGTAATCCTTCTCACCAACTTCTTTCCTTCAGCCACCGTCTCCCTTCATTCTCTAAACCCATTTCTTCTCTCTCCTTCCGGTCTCCGCCGCCGTCTCGCCTCCGTTCCTCTTTCAGGTCGTTGTCTGTTAAAGCCTCATCCTCTCCGTCGACCTCCGACGAAACCCTTCGGAACGCTGAATCTTCCATTTCCGATACCACGAATGGCGGCCTTCTGTCGGGATTTCTCAAAACCGCTTGTATCTCCGTTGCCGCTGCTGCATTCTTCTTCCTTCGCTTTGACCATCGACGCGCTGTTGCTGTTGCTGTCCCGGTGGCGCCGGAGACGACGGAGTCTACTGAGGAATCGACGGAATTTGAGGAAAATGAGAGCGTTGTGGAAGAGAAACAGACAGATGATTCGAATGATGTCGAAGCCCTTCGATCCCTCGTTGAGGAGAATGTAAAATCAGGTAAACTCCCTGAAGCGATTGAAGCCCTAAACCGTTTGATCGAACTTGAACCAAATGACCGTGAGTTGCCATTGCTAAGAGCCAATTTCCGTAGCTATATGGGTGAGCTCGAATTGGCGAAAAATGAATTTGAGGAGATTTTAGCGGAAGACCCATTTCGTGTTGAGGCTTACCATGGCCTTGCAATGGTGTCGGAGCAATTAAATGATAATTCATTGAAGGACGTTGCTAAAAGGATCGAAGAGGCAATGGAGAAATGCAAGAAGCAGAATGACAAGTCAGATATCAGGGATTTCAAGCTCTTGGTTGCGCAAATTAAGGTAATGGAGGGAAGTTATTTTGATGCATTGAAAGCTTATCAAGAACTTGTGAGGGAGGAGCCAAGGGATTTTAGGCCGTATCTATGTCAGGGGATCATATATACTCTTTTAAGGAAGAATGAGGAGGCTGAGAAACAGTTTGAGAAATTTAGGAGACTTGTTCCAAAAAACCATCCTTACAAAGAGTACTTTGATGAAAACATGTTTGCAACAAAGCTTTTTGCTCAGAAAATAGAAAAGGAGGGAGCTGGTTTGAAAAGCTGA

Protein sequence

MCSNWVILAKLYGLLEWSITKVTAMESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPSTSDETLRNAESSISDTTNGGLLSGFLKTACISVAAAAFFFLRFDHRRAVAVAVPVAPETTESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPNDRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKRIEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGIIYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS

Homology

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BLAST of Lsi01G013940 vs. ExPASy Swiss-Prot
Match: Q9LS48 (protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-26
Identity = 104/323 (32.20%), Postives = 163/323 (50.46%), Query Frame = 0


Query: 55  ISSLSFRSPPPSRLRSSFRSLSVKASSSPSTSDETLRNAESSISDTTNGG------LLSG 114
           ISSLS      S L SSF ++     + P      L +     S   N            
Sbjct: 2   ISSLS----ASSSLVSSFVAVKATPVTGPLIPRRDLLSIRIRASSNQNSSGYCFPEKFKS 61

Query: 115 FLKTACISVAAAAFFFLRFDHRRAVAVAVPVAPETTESTEESTEFEENESVVEE----KQ 174
           F K+A I + AA     +F         +PV  E+  +T E T  E  E  + E     +
Sbjct: 62  FAKSA-ILIGAAVSMTGKFS-------TLPVKAESPVTTIEKTYEEVKEEKLSEITPLSE 121

Query: 175 TDDSND--VEALRSLVEENVKSGKLPEAIEALNRLIELEPNDRELPLLRANFRSYMGELE 234
             DS    VE LRSL+++ ++ G+  EA++ L RL+  +P + E   L A     MG  E
Sbjct: 122 LLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETEWKFLMARLLGEMGRPE 181

Query: 235 LAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKRIEEAMEKCKKQNDKSDIRD 294
            A+  FEEIL  +P   EA    A++ ++  + +   V +R+E+A+   + +    + RD
Sbjct: 182 NARQMFEEILQRNPLSFEALFENALLMDRSGEGNA--VLQRLEDALAVAEAEYLVKEARD 241

Query: 295 FKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGIIYTLLRKNEEAEKQFEKFR 354
            +L++AQI  ++ +  +ALK+Y++L +E+P+DFRPY C+G+IY+LL KN EA++QF K+R
Sbjct: 242 VRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNVEAKEQFAKYR 301

Query: 355 RLVPKNHPYKEYFDENMFATKLF 366
            L PK    + Y    +   KLF
Sbjct: 302 ELSPKKFEVEGYLRTPLSKMKLF 310

[Close]

BLAST of Lsi01G013940 vs. ExPASy Swiss-Prot
Match: F8RP11 (Hsp70-Hsp90 organizing protein OS=Triticum aestivum OX=4565 GN=HOP PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.5e-04
Identity = 60/221 (27.15%), Postives = 91/221 (41.18%), Query Frame = 0


Query: 167 DSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPNDREL-----PLLRANFRSYMGEL 226
           D  D+  L +     ++ GK  E IE  ++ +E     REL      + RA  R      
Sbjct: 283 DDEDISYLTNRAAVYIEMGKYDECIEDCDKAVE---RGRELRADFKMVARALTRKGTALA 342

Query: 227 ELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKRIEEAMEKCKKQNDKSDIR 286
           +LAKN  +  +A + F+           + L ++   D  KR+ EA EK KK  ++ +  
Sbjct: 343 KLAKNSKDYDIAIETFQ-----------KALTEHRNPDTLKRLNEA-EKAKKDLEQQEYY 402

Query: 287 DFKLLVAQIK-----VMEGSYFDALKAYQELVREEPRDFRPYLCQGIIYTLLRKNEEAEK 346
           D KL   + +       +  Y +A+K Y E +R  P+D R Y  +   YT L    E  K
Sbjct: 403 DPKLADEEREKGNEMFKQQKYPEAIKHYNEAIRRNPKDARVYSNRAACYTKLGAMPEGLK 462

Query: 347 QFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLK 378
             EK   L P             F  K + + +E   AGLK
Sbjct: 463 DAEKCIELDPTFTKGYTRKGAVQFFMKEYEKAMETYQAGLK 488

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BLAST of Lsi01G013940 vs. ExPASy TrEMBL
Match: A0A6J1IQW2 (protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477618 PE=4 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 2.2e-160
Identity = 310/355 (87.32%), Postives = 326/355 (91.83%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESLPT+HHR +PS QLLSFSHRLPSF KPISSLSF   PP+RLRSSFRSLSVKASSS S
Sbjct: 1   MESLPTVHHRHHPSQQLLSFSHRLPSFPKPISSLSFAHTPPTRLRSSFRSLSVKASSSQS 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISV-AAAAFFFLRFDHRRAVAVAVPVAPET 144
           TSDE  RNA+SSIS+TTNGGLLSGFLKTACISV AAAAF+FLRFDHRR VAVAVPVAP T
Sbjct: 61  TSDEPSRNAKSSISETTNGGLLSGFLKTACISVAAAAAFYFLRFDHRRVVAVAVPVAPVT 120

Query: 145 TESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPN 204
           TEST+EST  EENESVVEEK TDD    E LRSLVEENVKSGKLPEAIE L+RLIE+EPN
Sbjct: 121 TESTDESTVHEENESVVEEKPTDDLRGAETLRSLVEENVKSGKLPEAIETLSRLIEIEPN 180

Query: 205 DRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKR 264
           DRELPLLRAN RSY G+LELAKNEFEEIL EDPFRVEAYHGL MVSEQLNDNSLKDV KR
Sbjct: 181 DRELPLLRANIRSYAGQLELAKNEFEEILREDPFRVEAYHGLVMVSEQLNDNSLKDVTKR 240

Query: 265 IEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGI 324
           IEEAMEKCKKQNDKS IRDFKLL+AQIKVM+GSYFDALKAY ELVREEP+DFRPYLC+GI
Sbjct: 241 IEEAMEKCKKQNDKSVIRDFKLLLAQIKVMKGSYFDALKAYDELVREEPKDFRPYLCRGI 300

Query: 325 IYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS 379
           IYTLLRKN+EAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQK+EKE AGLKS
Sbjct: 301 IYTLLRKNKEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKLEKEKAGLKS 355

[Close]

BLAST of Lsi01G013940 vs. ExPASy TrEMBL
Match: A0A6J1GF65 (protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453392 PE=4 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 1.4e-159
Identity = 309/355 (87.04%), Postives = 326/355 (91.83%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESLPT+HHR +PS QLLSFSHRLPSF KPISSLSF   PP+RLRSSFRSLSVKASSS S
Sbjct: 1   MESLPTVHHRHHPSQQLLSFSHRLPSFPKPISSLSFAHTPPTRLRSSFRSLSVKASSSQS 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISV-AAAAFFFLRFDHRRAVAVAVPVAPET 144
           TSDE  RNA+SSIS+T NGGLLSGFLKTACISV AAAAF+FLRFDHRR VAVAVPVA ET
Sbjct: 61  TSDEPSRNAKSSISETRNGGLLSGFLKTACISVAAAAAFYFLRFDHRRVVAVAVPVASET 120

Query: 145 TESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPN 204
           TEST+EST  EENESVVEEK TDDS+  E LRSLVEENVK GKLPEAIE L+RLIELEPN
Sbjct: 121 TESTDESTAHEENESVVEEKPTDDSSGAETLRSLVEENVKLGKLPEAIETLSRLIELEPN 180

Query: 205 DRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKR 264
           DRELPLLRAN RSY G+LELA+NEFEEIL EDPFRVEAYHGL MVSEQLNDNSLKDV KR
Sbjct: 181 DRELPLLRANVRSYAGQLELARNEFEEILREDPFRVEAYHGLVMVSEQLNDNSLKDVTKR 240

Query: 265 IEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGI 324
           IEEA+EKCKKQNDKS IRDFKLL+AQIKVM+GSYFDALKAY ELVREEP+DFRPYLCQGI
Sbjct: 241 IEEAVEKCKKQNDKSVIRDFKLLLAQIKVMKGSYFDALKAYDELVREEPKDFRPYLCQGI 300

Query: 325 IYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS 379
           IYTLLRKN+EAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQK+EKE AGLKS
Sbjct: 301 IYTLLRKNKEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKLEKEKAGLKS 355

[Close]

BLAST of Lsi01G013940 vs. ExPASy TrEMBL
Match: A0A6J1HFV1 (protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111463182 PE=4 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 2.0e-158
Identity = 308/356 (86.52%), Postives = 324/356 (91.01%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRS--SFRSLSVKASSS 84
           ME L T HHR  PS Q LSFS RLPSFS P SSL F SPPPSRLRS  SFRSLSVKASSS
Sbjct: 1   MEGLATFHHRPLPSQQHLSFSRRLPSFSYPSSSLFFLSPPPSRLRSPLSFRSLSVKASSS 60

Query: 85  PSTSDETLRNAESSISDTTNGGLLSGFLKTACISVAAAAFFFLRFDHRRAVAVAVPVAPE 144
           PSTSDET RNA+ SIS+TTN GLLSGFL+TACISVAAAAFFFLRFDHRRAV VA PVAPE
Sbjct: 61  PSTSDETSRNAKPSISETTNDGLLSGFLRTACISVAAAAFFFLRFDHRRAVVVAAPVAPE 120

Query: 145 TTESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEP 204
            TES EES  +EENESVVEE+  D+SNDVEALRSLVEENVKSGKLPEAIEALNRLIE+EP
Sbjct: 121 MTESIEESNPYEENESVVEEQPMDNSNDVEALRSLVEENVKSGKLPEAIEALNRLIEIEP 180

Query: 205 NDRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAK 264
           N+ ELPLLRANF SYMGELELAK+EFEEIL EDP RVEAYHGLA+VSEQLNDNSLK VAK
Sbjct: 181 NELELPLLRANFHSYMGELELAKSEFEEILMEDPLRVEAYHGLALVSEQLNDNSLKGVAK 240

Query: 265 RIEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQG 324
           RIE+AMEKCKKQN KSDIRDFKLL+AQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQG
Sbjct: 241 RIEQAMEKCKKQNKKSDIRDFKLLIAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQG 300

Query: 325 IIYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS 379
           IIY+LLRKNEEAEKQFEKFRRLVPKNHPY+EYFDEN+FATKLF QK+EKEGAGLKS
Sbjct: 301 IIYSLLRKNEEAEKQFEKFRRLVPKNHPYREYFDENVFATKLFGQKLEKEGAGLKS 356

[Close]

BLAST of Lsi01G013940 vs. ExPASy TrEMBL
Match: A0A6J1I5P2 (protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471257 PE=4 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 1.3e-157
Identity = 306/356 (85.96%), Postives = 323/356 (90.73%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRS--SFRSLSVKASSS 84
           ME L T HHR  PS Q LSFS RLP FS P SSL FRSPP SRLRS  SFRSLSVKASSS
Sbjct: 1   MEGLATFHHRPLPSQQHLSFSRRLPLFSYPTSSLFFRSPPLSRLRSPLSFRSLSVKASSS 60

Query: 85  PSTSDETLRNAESSISDTTNGGLLSGFLKTACISVAAAAFFFLRFDHRRAVAVAVPVAPE 144
           PSTSDET RNA+ SIS+TTN G LSGFL+TACISVAAAAFFFLRFDHRRAV VA PVAPE
Sbjct: 61  PSTSDETSRNAKPSISETTNDGFLSGFLRTACISVAAAAFFFLRFDHRRAVVVAAPVAPE 120

Query: 145 TTESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEP 204
            T+S EES  +EENESVVEE+  D+SNDVEALRSLVEENVKSGKLPEAIEALNRLIE+EP
Sbjct: 121 MTDSIEESNPYEENESVVEEQPVDNSNDVEALRSLVEENVKSGKLPEAIEALNRLIEIEP 180

Query: 205 NDRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAK 264
           N+ ELPLLRANF SYMGELELAK+EFEEIL EDP RVEAYHGLAMVSEQLNDNSLKDVAK
Sbjct: 181 NELELPLLRANFHSYMGELELAKSEFEEILMEDPLRVEAYHGLAMVSEQLNDNSLKDVAK 240

Query: 265 RIEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQG 324
           RIE+AMEKCKKQN KSDIRDFKLL+AQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQG
Sbjct: 241 RIEQAMEKCKKQNKKSDIRDFKLLIAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQG 300

Query: 325 IIYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS 379
           IIY+LLRKN+EAEKQFEKFRRLVPKNHPY+EYFDEN+FATKLF QK+EKEGAGLKS
Sbjct: 301 IIYSLLRKNDEAEKQFEKFRRLVPKNHPYREYFDENVFATKLFGQKLEKEGAGLKS 356

[Close]

BLAST of Lsi01G013940 vs. ExPASy TrEMBL
Match: A0A5A7TWQ7 (Protein SLOW GREEN 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001590 PE=4 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 8.5e-157
Identity = 304/353 (86.12%), Postives = 320/353 (90.65%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESLP+LHHRR  SHQLLSFSHRL SFSKPISSLSFRSPPPSRLRSS RSL VKASSS S
Sbjct: 1   MESLPSLHHRRFSSHQLLSFSHRLSSFSKPISSLSFRSPPPSRLRSSVRSLRVKASSSSS 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISVAAAAFFFLRFDHRRAVAVAVPVAPETT 144
           TSD+T          + NGGLLSGFLKTACISVA AAFFF RFD+RR VAVAV VAPETT
Sbjct: 61  TSDDT---------TSPNGGLLSGFLKTACISVAVAAFFFHRFDYRRFVAVAVQVAPETT 120

Query: 145 ESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPND 204
           EST+ESTE+EENESVVEEK+ DDSNDVEALRSLVEE+VKSGKLPEA+EALNRLIELEPND
Sbjct: 121 ESTDESTEYEENESVVEEKRADDSNDVEALRSLVEESVKSGKLPEAVEALNRLIELEPND 180

Query: 205 RELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKRI 264
            ELP+LRANF SYMGELELAKNEFEEILA+DP RVEAYHGLAMV+EQLNDNSLKDV KRI
Sbjct: 181 VELPMLRANFHSYMGELELAKNEFEEILAKDPLRVEAYHGLAMVAEQLNDNSLKDVTKRI 240

Query: 265 EEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGII 324
           EEAMEKCK Q DKSDIRDFKLLVAQIKVMEGSY DALKAYQELVREEPRDFRPYLCQGII
Sbjct: 241 EEAMEKCKNQKDKSDIRDFKLLVAQIKVMEGSYLDALKAYQELVREEPRDFRPYLCQGII 300

Query: 325 YTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLK 378
           YTLLRK+EEAEK FEKFRRLVPKNHPYKEY D+NM+ATK FAQK+EKEGAG K
Sbjct: 301 YTLLRKSEEAEKHFEKFRRLVPKNHPYKEYLDDNMYATKFFAQKVEKEGAGSK 344

[Close]

BLAST of Lsi01G013940 vs. NCBI nr
Match: XP_038883735.1 (protein SLOW GREEN 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 626.7 bits (1615), Expect = 1.3e-175
Identity = 335/354 (94.63%), Postives = 343/354 (96.89%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESLPTLHHRR+PSHQLLS SHRLPSFSKPISSLSFRSPPPS LRSSFRSLSVKASSS S
Sbjct: 1   MESLPTLHHRRHPSHQLLSSSHRLPSFSKPISSLSFRSPPPSPLRSSFRSLSVKASSSSS 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISVAAAAFFFLRFDHRRAVAVAVPVAPETT 144
           TSDETLRN +SSIS+TTN GLLSGFLKTACISVAAAAFFFLRFDHRRAVAVAVPVAPETT
Sbjct: 61  TSDETLRNDKSSISETTNCGLLSGFLKTACISVAAAAFFFLRFDHRRAVAVAVPVAPETT 120

Query: 145 ESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPND 204
           EST+EST +EENESVVEEK TDD NDVEALRSLVEE VKSGKLPEA+EALNRLIELEPND
Sbjct: 121 ESTDESTAYEENESVVEEKPTDDLNDVEALRSLVEEKVKSGKLPEAVEALNRLIELEPND 180

Query: 205 RELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKRI 264
            ELPLLRANF SYMGELELAKNEFEEILAEDPFRVEAYHGLAMV+EQLNDNSLKDVAKRI
Sbjct: 181 LELPLLRANFHSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVAEQLNDNSLKDVAKRI 240

Query: 265 EEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGII 324
           EEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGII
Sbjct: 241 EEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGII 300

Query: 325 YTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS 379
           YTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQK+EKEGAGLKS
Sbjct: 301 YTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKLEKEGAGLKS 354

[Close]

BLAST of Lsi01G013940 vs. NCBI nr
Match: XP_023545038.1 (protein SLOW GREEN 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 575.9 bits (1483), Expect = 2.6e-160
Identity = 310/355 (87.32%), Postives = 327/355 (92.11%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESLPT+HHR +PS QLLSFSHRLPSF KPISSLSF   PP+RLRSSFRSLSVKASSS S
Sbjct: 1   MESLPTVHHRHHPSQQLLSFSHRLPSFPKPISSLSFAHTPPTRLRSSFRSLSVKASSSQS 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISV-AAAAFFFLRFDHRRAVAVAVPVAPET 144
           TSDE  RN++SSIS+TTN GLLSGFLKTACISV AAAAF+FLRFDHRR VAVAVPVAPET
Sbjct: 61  TSDEPSRNSKSSISETTNSGLLSGFLKTACISVAAAAAFYFLRFDHRRVVAVAVPVAPET 120

Query: 145 TESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPN 204
            EST+EST  EENESVVEEK TDDS+  E LRSLVEENVKSGKLPEAIE L+RLIELEPN
Sbjct: 121 MESTDESTAHEENESVVEEKPTDDSSGAETLRSLVEENVKSGKLPEAIETLSRLIELEPN 180

Query: 205 DRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKR 264
           DRELPLLRAN RSY G+LELA+NEFEEIL EDPFRVEAYHGL MVSEQLNDNSLKDV KR
Sbjct: 181 DRELPLLRANVRSYAGQLELARNEFEEILREDPFRVEAYHGLVMVSEQLNDNSLKDVTKR 240

Query: 265 IEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGI 324
           IEEAMEKCKKQNDKS IRDFKLL+AQIKVM+GSYFDALKAY ELVREEP+DFRPYLCQGI
Sbjct: 241 IEEAMEKCKKQNDKSIIRDFKLLLAQIKVMKGSYFDALKAYDELVREEPKDFRPYLCQGI 300

Query: 325 IYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS 379
           IYTLLRKN+EAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQK+EKE AGLKS
Sbjct: 301 IYTLLRKNKEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKLEKEKAGLKS 355

[Close]

BLAST of Lsi01G013940 vs. NCBI nr
Match: XP_022977249.1 (protein SLOW GREEN 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 575.1 bits (1481), Expect = 4.5e-160
Identity = 310/355 (87.32%), Postives = 326/355 (91.83%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESLPT+HHR +PS QLLSFSHRLPSF KPISSLSF   PP+RLRSSFRSLSVKASSS S
Sbjct: 1   MESLPTVHHRHHPSQQLLSFSHRLPSFPKPISSLSFAHTPPTRLRSSFRSLSVKASSSQS 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISV-AAAAFFFLRFDHRRAVAVAVPVAPET 144
           TSDE  RNA+SSIS+TTNGGLLSGFLKTACISV AAAAF+FLRFDHRR VAVAVPVAP T
Sbjct: 61  TSDEPSRNAKSSISETTNGGLLSGFLKTACISVAAAAAFYFLRFDHRRVVAVAVPVAPVT 120

Query: 145 TESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPN 204
           TEST+EST  EENESVVEEK TDD    E LRSLVEENVKSGKLPEAIE L+RLIE+EPN
Sbjct: 121 TESTDESTVHEENESVVEEKPTDDLRGAETLRSLVEENVKSGKLPEAIETLSRLIEIEPN 180

Query: 205 DRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKR 264
           DRELPLLRAN RSY G+LELAKNEFEEIL EDPFRVEAYHGL MVSEQLNDNSLKDV KR
Sbjct: 181 DRELPLLRANIRSYAGQLELAKNEFEEILREDPFRVEAYHGLVMVSEQLNDNSLKDVTKR 240

Query: 265 IEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGI 324
           IEEAMEKCKKQNDKS IRDFKLL+AQIKVM+GSYFDALKAY ELVREEP+DFRPYLC+GI
Sbjct: 241 IEEAMEKCKKQNDKSVIRDFKLLLAQIKVMKGSYFDALKAYDELVREEPKDFRPYLCRGI 300

Query: 325 IYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS 379
           IYTLLRKN+EAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQK+EKE AGLKS
Sbjct: 301 IYTLLRKNKEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKLEKEKAGLKS 355

[Close]

BLAST of Lsi01G013940 vs. NCBI nr
Match: KAG6603680.1 (protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033857.1 protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 572.4 bits (1474), Expect = 2.9e-159
Identity = 309/355 (87.04%), Postives = 326/355 (91.83%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESLPT+HHR +PS QLLS SHRLPSF KPISSLSF   PP+RLRSSFRSLSVKASSS S
Sbjct: 1   MESLPTVHHRHHPSQQLLSISHRLPSFPKPISSLSFAHTPPNRLRSSFRSLSVKASSSQS 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISV-AAAAFFFLRFDHRRAVAVAVPVAPET 144
           TSDE+ RNA+SSIS+T NGGLLSGFLKTACISV AAAAF+FLRFDHRR VAVAVPVA ET
Sbjct: 61  TSDESSRNAKSSISETRNGGLLSGFLKTACISVAAAAAFYFLRFDHRRVVAVAVPVASET 120

Query: 145 TESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPN 204
           TEST+EST  EENESVVEEK TDDS+  E LRSLVEENVK GKLPEAIE L+RLIELEPN
Sbjct: 121 TESTDESTAHEENESVVEEKPTDDSSGAETLRSLVEENVKLGKLPEAIETLSRLIELEPN 180

Query: 205 DRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKR 264
           DRELPLLRAN RSY G+LELA+NEFEEIL EDPFRVEAYHGL MVSEQLNDNSLKDV KR
Sbjct: 181 DRELPLLRANVRSYAGQLELARNEFEEILREDPFRVEAYHGLVMVSEQLNDNSLKDVTKR 240

Query: 265 IEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGI 324
           IEEAMEKCKKQNDKS IRDFKLL+AQIKVM+GSYFDALKAY ELVREEP+DFRPYLCQGI
Sbjct: 241 IEEAMEKCKKQNDKSVIRDFKLLLAQIKVMKGSYFDALKAYDELVREEPKDFRPYLCQGI 300

Query: 325 IYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS 379
           IYTLLRKN+EAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQK+EKE AGLKS
Sbjct: 301 IYTLLRKNKEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKLEKEKAGLKS 355

[Close]

BLAST of Lsi01G013940 vs. NCBI nr
Match: XP_022950245.1 (protein SLOW GREEN 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 572.4 bits (1474), Expect = 2.9e-159
Identity = 309/355 (87.04%), Postives = 326/355 (91.83%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESLPT+HHR +PS QLLSFSHRLPSF KPISSLSF   PP+RLRSSFRSLSVKASSS S
Sbjct: 1   MESLPTVHHRHHPSQQLLSFSHRLPSFPKPISSLSFAHTPPTRLRSSFRSLSVKASSSQS 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISV-AAAAFFFLRFDHRRAVAVAVPVAPET 144
           TSDE  RNA+SSIS+T NGGLLSGFLKTACISV AAAAF+FLRFDHRR VAVAVPVA ET
Sbjct: 61  TSDEPSRNAKSSISETRNGGLLSGFLKTACISVAAAAAFYFLRFDHRRVVAVAVPVASET 120

Query: 145 TESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPN 204
           TEST+EST  EENESVVEEK TDDS+  E LRSLVEENVK GKLPEAIE L+RLIELEPN
Sbjct: 121 TESTDESTAHEENESVVEEKPTDDSSGAETLRSLVEENVKLGKLPEAIETLSRLIELEPN 180

Query: 205 DRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKR 264
           DRELPLLRAN RSY G+LELA+NEFEEIL EDPFRVEAYHGL MVSEQLNDNSLKDV KR
Sbjct: 181 DRELPLLRANVRSYAGQLELARNEFEEILREDPFRVEAYHGLVMVSEQLNDNSLKDVTKR 240

Query: 265 IEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGI 324
           IEEA+EKCKKQNDKS IRDFKLL+AQIKVM+GSYFDALKAY ELVREEP+DFRPYLCQGI
Sbjct: 241 IEEAVEKCKKQNDKSVIRDFKLLLAQIKVMKGSYFDALKAYDELVREEPKDFRPYLCQGI 300

Query: 325 IYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGAGLKS 379
           IYTLLRKN+EAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQK+EKE AGLKS
Sbjct: 301 IYTLLRKNKEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKLEKEKAGLKS 355

[Close]

BLAST of Lsi01G013940 vs. TAIR 10
Match: AT2G37400.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-84
Identity = 190/355 (53.52%), Postives = 243/355 (68.45%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESL  L   + P+H  LSF+H   SF K  SS S RS P  R  SSF+ +S+KASSS  
Sbjct: 1   MESLGKLQLHQQPNH--LSFTHFSSSFPKKPSSFSLRSLP--RSTSSFKCISIKASSS-- 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACIS-VAAAAFFFLRFDHRRAVAVAVPVAP-- 144
                 ++ +S +S           LK+ C+S  AAAA F +    + + A+A PVA   
Sbjct: 61  ------KSQDSKLS----------ILKSTCVSFTAAAALFLVNLQLKPSPAIAAPVAATP 120

Query: 145 --ETTESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIE 204
             E+ + +  +  FEE E  +EE      +DVEALRSL+E  +KS KL EAIE ++RLIE
Sbjct: 121 LMESLKQSNGNVSFEEEERSLEEYLASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIE 180

Query: 205 LEPNDRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKD 264
           LEP ++E P+L+AN  SY G+LE AK  FEEIL +DP RVEAYHGL M      D+ L  
Sbjct: 181 LEPEEKEWPMLKANIFSYSGDLESAKTGFEEILVKDPLRVEAYHGLVMAYSDSGDD-LNA 240

Query: 265 VAKRIEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYL 324
           V KRIEEAM +CKK+ ++ D+RDFKLLVAQI+V+EG + +ALK Y+ELV+EEPRDFRPYL
Sbjct: 241 VEKRIEEAMVRCKKEKNRKDLRDFKLLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYL 300

Query: 325 CQGIIYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGA 375
           CQGIIYT+L+K  EAEKQFEKFRRLVPKNHPY+EYF +NM A+KLFA+K+++E A
Sbjct: 301 CQGIIYTVLKKENEAEKQFEKFRRLVPKNHPYREYFMDNMVASKLFAEKVQREMA 332

[Close]

BLAST of Lsi01G013940 vs. TAIR 10
Match: AT3G53560.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 291.2 bits (744), Expect = 1.2e-78
Identity = 173/350 (49.43%), Postives = 236/350 (67.43%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           MESL  L     P H  LSF+H         SS +F   P +  +SS + +S   S+S  
Sbjct: 1   MESLGKLQLHHQPFH--LSFTH--------TSSSTF---PKNLFKSSIQPISSLKSASIK 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISVAAAAFFFLRFDHRRAVAVAVPVAPETT 144
            S    +N+ + +  +T   L     K+ CI++  AA   L   H ++ A+A P+AP  +
Sbjct: 61  ASSSKFQNSITPLPKSTPFRL----FKSTCITLTTAAALLLANLHLKSPAIAAPIAPPPS 120

Query: 145 ESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRLIELEPND 204
             ++E+   EE E  ++E      +DV+ALRSL+E  +KS KL EA+E ++RLI+LEP +
Sbjct: 121 VESKENVTLEEEERALDEHLITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRLIKLEPEE 180

Query: 205 RELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSLKDVAKRI 264
           +E P+L+AN  +Y G+L+LAK  FEEILA+DP RVEAYHGL M         LK+V  RI
Sbjct: 181 KEWPVLKANIFTYSGDLDLAKTGFEEILAKDPLRVEAYHGLLMAYSDAG-LDLKEVESRI 240

Query: 265 EEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRPYLCQGII 324
           EEAM KCKK+N+++D RDFKLLVAQI+V+EG + +ALK YQELV+EEPRDFRPYLCQGII
Sbjct: 241 EEAMLKCKKENNQNDFRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPYLCQGII 300

Query: 325 YTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATKLFAQKIEKEGA 375
           YTLL+K ++AE+QF+ FR+LVPKNHPY+EYF +NM ATKLF++K ++E A
Sbjct: 301 YTLLKKKDKAEEQFDNFRKLVPKNHPYREYFMDNMIATKLFSEKAQREMA 332

[Close]

BLAST of Lsi01G013940 vs. TAIR 10
Match: AT5G02590.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 237.3 bits (604), Expect = 2.1e-62
Identity = 150/355 (42.25%), Postives = 215/355 (60.56%), Query Frame = 0


Query: 25  MESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFRSPPPSRLRSSFRSLSVKASSSPS 84
           M SL   H+     H  L  +HR P   KP+S      PPPSR+    R+ S  ++  PS
Sbjct: 1   MVSLAKFHYCDQTLHLRLD-THRKPQ-PKPVSYRILHKPPPSRV---IRASSFSSNPKPS 60

Query: 85  TSDETLRNAESSISDTTNGGLLSGFLKTACISVAAAAFFFLRFDH--RRAVAVAVPVAPE 144
                                   FLKT C+++  AA       H   + V  A  V+P 
Sbjct: 61  ------------------------FLKTTCVTLTTAAALLSASLHLSTKPVTAATLVSPP 120

Query: 145 ---------TTESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEA 204
                    T++      + EE E+ +E+  T + NDVEAL+SL++   ++  +  A+E 
Sbjct: 121 PPPSTAADLTSDQISSRPKEEEEEAALEKHLTKNPNDVEALQSLMKIKFQTKNIDHALEI 180

Query: 205 LNRLIELEPNDRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLN 264
           LNRLIE++P ++E  +L+A  ++Y G+ + A   FEE+L++DPFRVEAYHGL M   + +
Sbjct: 181 LNRLIEIQPEEQEWRILKAQVQTYGGDFDSATKGFEEVLSKDPFRVEAYHGLVMAYSE-S 240

Query: 265 DNSLKDVAKRIEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPR 324
           ++ L ++  RI EA+EKCKK+N K D RDF LL+AQI+V++G+  +AL+ YQELV++EP+
Sbjct: 241 ESKLSEIESRINEAIEKCKKEN-KKDFRDFMLLIAQIRVIKGNPIEALRVYQELVKDEPK 300

Query: 325 DFRPYLCQGIIYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFAT-KLFAQ 368
           DFRPYLCQG+IYTL++K +EAEKQF +FRRLVP+NHPYKEY D N+  T KLFA+
Sbjct: 301 DFRPYLCQGLIYTLMKKKDEAEKQFAEFRRLVPENHPYKEYLDANVLNTNKLFAK 324

[Close]

BLAST of Lsi01G013940 vs. TAIR 10
Match: AT3G09490.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 5.5e-39
Identity = 113/302 (37.42%), Postives = 167/302 (55.30%), Query Frame = 0


Query: 53  KPISSLSFRSPPPSRLRSSFRSLSVKASSSPSTSDETLRNAESSISDTTNGGLLSGFLKT 112
           K  S LSF    P   R   +S  ++     ++S  +  N + S+  TT   L      T
Sbjct: 24  KSPSKLSF----PLLFRDQAKSTPIRFPVIRASSSSSASNHKPSLLKTTFISL------T 83

Query: 113 ACISVAAAAFFFLRFDHRRAVAVAVPVAPETTESTEESTEFEENESVVEEKQTDDSNDVE 172
           A  ++ +A+F+F+   ++RA    V V                 E+ +E+     SNDV 
Sbjct: 84  AAAALFSASFYFV---NKRAAMTPVAVV----------------ETTLEKHLETQSNDVN 143

Query: 173 ALRSLVEENVKSGKLPEAIEALNRLIELEPNDRELPLLRANFRSYMGELELAKNEFEEIL 232
           AL  L E   KS K  +AI  L+RLIE+EP +R+ P ++A   SY G+ E A   FEEIL
Sbjct: 144 ALSLLTEIKFKSDKHEQAIVFLDRLIEIEPYERKWPAMKARILSYHGKSESAIEAFEEIL 203

Query: 233 AEDPFRVEAYHGLAMVSEQLNDN-SLKDVAKRIEEAMEKCKKQNDKSDIRDFKLLVAQIK 292
            +DP RV+AYH L M  E  N    L ++ KRI + + +CKK+    +I  F++L+AQI+
Sbjct: 204 EKDPIRVDAYHYLVM--EYYNSKPKLTEIEKRINKVIRRCKKEKKTKEILGFRMLIAQIR 263

Query: 293 VMEGSYFDALKAYQELVREEPRDFRPYLCQGIIYTLLRKNEEAEKQFEKFRRLVPKNHPY 352
            +EG   +A++  +ELV+E+P DF  YL QG++YTL+ K EEA KQFE   R++P+NHP 
Sbjct: 264 FIEGKSVEAIRICEELVKEDPNDFTIYLFQGVVYTLMNKGEEAAKQFEHVARVIPRNHPS 294

Query: 353 KE 354
           +E
Sbjct: 324 RE 294

[Close]

BLAST of Lsi01G013940 vs. TAIR 10
Match: AT4G39470.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-32
Identity = 113/346 (32.66%), Postives = 185/346 (53.47%), Query Frame = 0


Query: 22  VTAMESLPTLHHRRNPSHQLLSFSHRLPSFSKPISSLSFR----SPPPSRLRSSFRSLSV 81
           VTA+ S    HHRR    Q L F+   P+  +  +   FR     P   RL         
Sbjct: 6   VTALCSPAKFHHRR---EQSLIFT---PTHLRNPNGFQFRWRKSRPFAPRL--------- 65

Query: 82  KASSSPSTSDETLRNAESSISDTTNGGLLSGFLKTACISVAAAAFFFLRFDHRRAVAVAV 141
              + P      L    SS S  ++   +    + A I +   +F FL F   +  A+A+
Sbjct: 66  ---AQPDNFAPPLPLIRSSTSLLSSKDFVQMLARKAAI-LLVGSFVFLGFCSSKP-ALAL 125

Query: 142 PVAPETTESTEESTEFEENESVVEEKQTDDSNDVEALRSLVEENVKSGKLPEAIEALNRL 201
           P A      T  S    E+E + E+   ++  ++EA++++V + ++ GK  +A++ + +L
Sbjct: 126 PTA------TVVSQAELEDEKMFEKLLENEPENMEAMKAVVYKKMRRGKNEDAVKYVEKL 185

Query: 202 IELEPNDRELPLLRANFRSYMGELELAKNEFEEILAEDPFRVEAYHGLAMVSEQLNDNSL 261
           ++LEP++ E  LL A     MGEL  AK  +++IL E P  + A HGLAMV  + +D S+
Sbjct: 186 MKLEPHEVEWKLLEALCYETMGELSKAKRLYKDILKEQPLLIRALHGLAMVMHKTHDTSV 245

Query: 262 KDVAKRIEEAMEKCKKQNDKSDIRDFKLLVAQIKVMEGSYFDALKAYQELVREEPRDFRP 321
            D+   + EAME  ++ N  ++ R+ ++L+ Q+ ++EG + + LK +Q++V + PRDFRP
Sbjct: 246 FDM---LIEAMEVARQGNRVTEERNIQVLIGQMHIVEGQFEEGLKIFQQMVNDNPRDFRP 305

Query: 322 YLCQGIIYTLLRKNEEAEKQFEKFRRLVPKNHPYKEYFDENMFATK 364
           YLCQGI+Y+L+ K EEA +QFE +  LVP   P K + D+   A +
Sbjct: 306 YLCQGIVYSLMDKKEEAAQQFEIYWSLVPGEFPQKGFLDDVALAAQ 322

The following BLAST results are available for this feature:

BLAST of Lsi01G013940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS48	5.2e-26	32.20	protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 ...	[more]
F8RP11	2.5e-04	27.15	Hsp70-Hsp90 organizing protein OS=Triticum aestivum OX=4565 GN=HOP PE=1 SV=1	[more]

BLAST of Lsi01G013940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQW2	2.2e-160	87.32	protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1GF65	1.4e-159	87.04	protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1HFV1	2.0e-158	86.52	protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I5P2	1.3e-157	85.96	protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A5A7TWQ7	8.5e-157	86.12	Protein SLOW GREEN 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908...	[more]

BLAST of Lsi01G013940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883735.1	1.3e-175	94.63	protein SLOW GREEN 1, chloroplastic-like [Benincasa hispida]	[more]
XP_023545038.1	2.6e-160	87.32	protein SLOW GREEN 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977249.1	4.5e-160	87.32	protein SLOW GREEN 1, chloroplastic-like [Cucurbita maxima]	[more]
KAG6603680.1	2.9e-159	87.04	protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022950245.1	2.9e-159	87.04	protein SLOW GREEN 1, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Lsi01G013940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37400.1	1.1e-84	53.52	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53560.1	1.2e-78	49.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G02590.1	2.1e-62	42.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09490.1	5.5e-39	37.42	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39470.1	1.3e-32	32.66	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 257..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..168
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 25..369
None	No IPR available	PANTHER	PTHR26312:SF146	TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 25..369
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 281..314 e-value: 400.0 score: 0.9 coord: 315..348 e-value: 13.0 score: 13.9 coord: 171..204 e-value: 8.3 score: 15.4
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 171..204 score: 9.2929
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 129..361 e-value: 5.1E-24 score: 86.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 170..349

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G013940.1	Lsi01G013940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding