Lsi01G013760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G013760
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein MODIFIER OF SNC1 11-like
Locationchr01: 11944577 .. 11948497 (+)
RNA-Seq ExpressionLsi01G013760
SyntenyLsi01G013760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAGACCCAAAAACGAATAGAAAAGCTGTGCCCTCTCTTTTCACGCGGCAATTCCTCTTGCAGCTTTCGCAGTTCGCAAGCAGTCTCCGATTAGGTTTCCGGTCTCAAATCTGCTCTCCAATGGCGACGGTAGCATCTGCAGGACTTAATGACATTAGCAACAGCAAGAATCCGCTTGGAGAAAACCCAAGTCAAACCCTAGACCCGACGATTTCTTCCTCGGCCCAGCCTCCTGCCTCCGTTCCGCCTTCGTCAACTGATGGCGGGTCATCAAAGGAAAGGGATGAATCCAAGGGCCCCGGCAAGGCGTCGGTTGAAGATGATGGTGCACCGGTTACTGATGTCCAGAGGAAAATGCGCCGTGCCGAGCGTTTTGGGATTTCAGTGCAATTGTCTGAAGAAGAAAAGCGTAATTCTCGAGCGGAACGGTGAGTCTATTTCTTGGTTATCGGCCTTCGTCGCATGCCTGTGCTCGTTCTTGTCTTGTTGCGTATTTGAATCTATCTCTCTTGGGAGATCATGCCCTTCTGCATAGTTTGTTTCCTTTGATTGTTTTGAATCTAGATGTTTTTATTTATTTTTACGGACAAATGTAGTGATAAGTCACTGGTATAAATATTACATTTCTATCTCATAAACTGCCTGAGTAGGGACTTTAACAAACCACCCAAAAATTCATGTATCTCCCGTCATATGTTAGACCGAGGATTTGCTTGTGTAGTTACGAGGTTATTTGGAACTTGTAAGTTATGGTTTTGTGGAGCATATCAACCCTGTATCGTTATTTAGTCCTATGTTTAGGTTTTAGTGCCCAATCTAATTGTTCATATTCGGGCAATGGCTTGAAATTCTAATTGGAATGGCATATATATATTTGAAACCCAAAATGATTGCAGTGGCTTATTTTTATATGTCAAAAGTTATATCTATGTTAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAGAGAGGAAAGTTGAAGCCCTTTCTCTCTTTCCTGTCCCTTCTCAAGTGAACTTTGGAACGATGTGCAATGCTCTTTCAGTCTTTCTCGGGGCTTACAGAATTGTGCCTCGCACACAAAGCAGCTAAACCGTTGTACTTTCATAATTACGATCTTCGTGTCGTGGTTTTGTCTTGTCTATAGTGTCTTGTGGAATTTTGGTTGGAAAGAGCTGCTAAAATCTTCGAAGATAAGTTATAAAATTGACACACCGTGTGGGAATTAATTCTTTTTCGGGCTCGTATTGGTGTTCTCTGTCTTCTTGTTTCTATAATTTAAATATTCACACTTTTCTTTCCTTTTCCAAGTTATGTTGAGAGCCATGTTTCTCTTTTAGTTTTCCGTCAAATATCTTTAATGTCGATTGCTGGGGATAATTGCAGATTTGGTATGGGTTCCACAACTAATGGATTGGGAGCATCTAATAAGACGGAGGAGGTGAAGAGAAAGGCTAGAGCTGAGAGGTATTTATCATTTCTTTATGTATTGATTGCTCACCCTGTCAAAGAAATTGTATTTATTGTCTTTTACTCAGTTAACTTTTCTTTCAAACTTTTGCCCCCTTTTTTTGGTTATTTAGATTTGGGCTTTCTGCATCTGTGACTACTGATGATGAGGCAAAGAAGAAAGCTCGTCTTGCTAGGTTTTCATCAACATCAAAGCCAGACCCCCAGGAGGAAGAAAAGAGGAAAGCAAGGGCAATCAGGTAGTGGGCTTGGATTTTTGTTTCCCTGGTTGTAGCGAATTGAAATGCTTCCAGTTCTATCATCTGTGGTTCATGGAGGTCTTGTATGGAGTCTATAAACATTAGAATGCATCTAACATATTGTTTGTTTTTCCCTTTATTTTCTGGGTGAAGGTTTTCTAATCCAACATCAAACTCTCTCACACAAGTGGATGGGAAAGGAAACGTTGAGACGGTAATGTTATCCTTTTAAGTTTCTTTTGCTATCTTGTAGGATATAGGAAACAGTAGTGTGTGCTAGTTTCCAATGCTCTTGTTCCCATTGATGATTCCTATTGTTTGTAATCAGATTGCAGATGATGCAGGCAAGGCTGGAGGTGGTGCCTGAAAAGAACATCCCCTTTTGATGGCAAGATAGCTTTTGCTTGTAAATTTCTTTTGTGGTTCGTGTTTCTTTTTAAAGTCTGATTGGCATTCCACCTTCAGAAATTTATATCTTATTCAAATCTGTATTGTTTCTTGTTGTACCTGTGTTATTGAATCTGATGATTGATTTCTTTCTCTGGCAGGTCTAGTATCCTGGTTAGGATTCCCTGTAATGGCTTCCATACCCATGTGCATTCCTTTATAATATTATCTAGTTCAAAAGTCTTCCATTCTGAGGGCAGATTCCATACTGCAAGGTGCTGTACTACGTGTTGCTTTGAGACGAGGGTCCCTAGATTCAGTTGTGTCAGGATATTAATTCTCTGGTTAGGTGATATATATTAGCAAATACCTTCCTAGGTCAAACCTATCTTACAAGTTTATTGAAGAATATCGGAAATTTCTGAAGTTTTAAGCCCTCCAAAGTCCAATGTTTTGGTTATCATCTTCAGTTTATATCTCCTCTGTGATGACAAGTTGGATGTTCATGATATCATTTGAACGGCAGTGTTAAGTTTCCATGTGCATTGGTACCATCTGCTATTGACAGGTTGAAATTTTCTAATTTGTCAAATTGACTTTCAGGATTAGGAAGTTAACATATCTTGCTTTTCTTTGACTTAATATCACTAGGTTTTTAGTTTTCTAACTATAATTTAGTTCGAATTCTTAGGTTGTTCCTTTTTAATGATGGGTTTTTATTTTGCTGACTGTAAGAGTGTAAGACTAATGGCCAACTATCAATGTTAGGAAACTTGCATGTATATCTTTTGCCTTTTCTTTTTCAGAGACAGATCAATAGTCTGAGCACAGCCAGTTGTTATCCAATTACTTACGTTCGAGGTTTGGTCTCTTTGTATGATGCTAACACATCTCATCTCATGGCATCACTTATAATTACTCATCATGGAAGTGACTACTCCTAGTTTTACTATAACCTGCAGAATACTTCGGTTAGAATGGGTCATGTGTTGAATGTTATTTAGAACTGCCGTTCAAAATGTCATCATGAAATAATAGCTCCAACTTGTGTGAGAATAAACTGAAGTAAGTTTTGGGAGGGGGAAGAAAGTATCAGTTCCATTGGTAAGTGGTCGTGTGGAAGAAGCTGAAGTCTCTCTTCTAACTTGGGAGTTTCTGATATTCTTGTTTGGTTATATAGGATAGGTCTTTGGAGGTATTTGTTGGCTCTCTTAGAAGTCTGCATGTATCGAGGTCTGTAGCTGAGAATGGATCGTACTTTACAAATAGGTTTCTCGTCAAGTTTCTGTTGTTTCTTTCTTCTTTTCCTTTGATCTTTATGTGCTTAGCTACTTAGCAGCTACATGTATTTAGTTTCTTTTGGATTTTTGGTTGGATGTAATGGTATGGAAGGACCACAACATTTATAGAGGGAATCGATATTTTGATCAAAATTTCTTTTGTG

mRNA sequence

CCAGACCCAAAAACGAATAGAAAAGCTGTGCCCTCTCTTTTCACGCGGCAATTCCTCTTGCAGCTTTCGCAGTTCGCAAGCAGTCTCCGATTAGGTTTCCGGTCTCAAATCTGCTCTCCAATGGCGACGGTAGCATCTGCAGGACTTAATGACATTAGCAACAGCAAGAATCCGCTTGGAGAAAACCCAAGTCAAACCCTAGACCCGACGATTTCTTCCTCGGCCCAGCCTCCTGCCTCCGTTCCGCCTTCGTCAACTGATGGCGGGTCATCAAAGGAAAGGGATGAATCCAAGGGCCCCGGCAAGGCGTCGGTTGAAGATGATGGTGCACCGGTTACTGATGTCCAGAGGAAAATGCGCCGTGCCGAGCGTTTTGGGATTTCAGTGCAATTGTCTGAAGAAGAAAAGCGTAATTCTCGAGCGGAACGATTTGGTATGGGTTCCACAACTAATGGATTGGGAGCATCTAATAAGACGGAGGAGGTGAAGAGAAAGGCTAGAGCTGAGAGATTTGGGCTTTCTGCATCTGTGACTACTGATGATGAGGCAAAGAAGAAAGCTCGTCTTGCTAGGTTTTCATCAACATCAAAGCCAGACCCCCAGGAGGAAGAAAAGAGGAAAGCAAGGGCAATCAGGTTTTCTAATCCAACATCAAACTCTCTCACACAAGTGGATGGGAAAGGAAACGTTGAGACGATTGCAGATGATGCAGGCAAGGCTGGAGGTGGTGCCTGAAAAGAACATCCCCTTTTGATGGCAAGATAGCTTTTGCTTGTAAATTTCTTTTGTGGTCTAGTATCCTGGTTAGGATTCCCTGTAATGGCTTCCATACCCATGTGCATTCCTTTATAATATTATCTAGTTCAAAAGTCTTCCATTCTGAGGGCAGATTCCATACTGCAAGGTGCTGTACTACGTGTTGCTTTGAGACGAGGGTCCCTAGATTCAGTTGTGTCAGGATATTAATTCTCTGGTTAGGTGATATATATTAGCAAATACCTTCCTAGGTCAAACCTATCTTACAAGTTTATTGAAGAATATCGGAAATTTCTGAAGTTTTAAGCCCTCCAAAGTCCAATGTTTTGGTTATCATCTTCAGTTTATATCTCCTCTGTGATGACAAGTTGGATGTTCATGATATCATTTGAACGGCAGTGTTAAGTTTCCATGTGCATTGGTACCATCTGCTATTGACAGGTTGAAATTTTCTAATTTGTCAAATTGACTTTCAGGATTAGGAAGTTAACATATCTTGCTTTTCTTTGACTTAATATCACTAGGTTTTTAGTTTTCTAACTATAATTTAGTTCGAATTCTTAGGTTGTTCCTTTTTAATGATGGGTTTTTATTTTGCTGACTGTAAGAGTGTAAGACTAATGGCCAACTATCAATGTTAGGAAACTTGCATGTATATCTTTTGCCTTTTCTTTTTCAGAGACAGATCAATAGTCTGAGCACAGCCAGTTGTTATCCAATTACTTACGTTCGAGGTTTGGTCTCTTTGTATGATGCTAACACATCTCATCTCATGGCATCACTTATAATTACTCATCATGGAAGTGACTACTCCTAGTTTTACTATAACCTGCAGAATACTTCGGTTAGAATGGGTCATGTGTTGAATGTTATTTAGAACTGCCGTTCAAAATGTCATCATGAAATAATAGCTCCAACTTGTGTGAGAATAAACTGAAGTAAGTTTTGGGAGGGGGAAGAAAGTATCAGTTCCATTGGTAAGTGGTCGTGTGGAAGAAGCTGAAGTCTCTCTTCTAACTTGGGAGTTTCTGATATTCTTGTTTGGTTATATAGGATAGGTCTTTGGAGGTATTTGTTGGCTCTCTTAGAAGTCTGCATGTATCGAGGTCTGTAGCTGAGAATGGATCGTACTTTACAAATAGGTTTCTCGTCAAGTTTCTGTTGTTTCTTTCTTCTTTTCCTTTGATCTTTATGTGCTTAGCTACTTAGCAGCTACATGTATTTAGTTTCTTTTGGATTTTTGGTTGGATGTAATGGTATGGAAGGACCACAACATTTATAGAGGGAATCGATATTTTGATCAAAATTTCTTTTGTG

Coding sequence (CDS)

ATGGCGACGGTAGCATCTGCAGGACTTAATGACATTAGCAACAGCAAGAATCCGCTTGGAGAAAACCCAAGTCAAACCCTAGACCCGACGATTTCTTCCTCGGCCCAGCCTCCTGCCTCCGTTCCGCCTTCGTCAACTGATGGCGGGTCATCAAAGGAAAGGGATGAATCCAAGGGCCCCGGCAAGGCGTCGGTTGAAGATGATGGTGCACCGGTTACTGATGTCCAGAGGAAAATGCGCCGTGCCGAGCGTTTTGGGATTTCAGTGCAATTGTCTGAAGAAGAAAAGCGTAATTCTCGAGCGGAACGATTTGGTATGGGTTCCACAACTAATGGATTGGGAGCATCTAATAAGACGGAGGAGGTGAAGAGAAAGGCTAGAGCTGAGAGATTTGGGCTTTCTGCATCTGTGACTACTGATGATGAGGCAAAGAAGAAAGCTCGTCTTGCTAGGTTTTCATCAACATCAAAGCCAGACCCCCAGGAGGAAGAAAAGAGGAAAGCAAGGGCAATCAGGTTTTCTAATCCAACATCAAACTCTCTCACACAAGTGGATGGGAAAGGAAACGTTGAGACGATTGCAGATGATGCAGGCAAGGCTGGAGGTGGTGCCTGA

Protein sequence

MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGPGKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTEEVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNSLTQVDGKGNVETIADDAGKAGGGA
Homology
[Close]
BLAST of Lsi01G013760 vs. ExPASy Swiss-Prot
Match: Q9LZ08 (Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana OX=3702 GN=MOS11 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-27
Identity = 86/170 (50.59%), Postives = 110/170 (64.71%), Query Frame = 0 

Query: 20  GENPSQTLDPTISSSAQPPASVP---PSSTDGGSSKERDESKGPGKASVEDDG--APVTD 79
           GENP + +D   +   +    +       +D G  KE  +S G G  +  D G  +PV D
Sbjct: 21  GENPKKIVDLNTTELDRTDDILDGEVKGFSDSGEKKEETDSNGIGSTAGVDSGDISPVDD 80

Query: 80  VQRKMRRAERFGISVQLSEEEKRNSRAERFG--MGSTTNGLGASNKTEEVKRKARAERFG 139
           +Q+K+RRAERFG+SV+L+EEEKRNSRAERFG    +  NG   + K EE+KRKARA+RFG
Sbjct: 81  IQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELKRKARADRFG 140

Query: 140 L-SASVTTD---DEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTS 179
           + SA+ TTD   +EAKKKARLARF   +K D  EE KRKARA+RFS   S
Sbjct: 141 VPSATSTTDKTEEEAKKKARLARFGKETKVDSAEENKRKARALRFSKEAS 190

[Close]
BLAST of Lsi01G013760 vs. ExPASy Swiss-Prot
Match: P82979 (SAP domain-containing ribonucleoprotein OS=Homo sapiens OX=9606 GN=SARNP PE=1 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 0 

Query: 72  VTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGST-TNGLGASNK--TEEVKRKARA 131
           +   +R  +RAERF + V L  E K+ +RA RFG+ S  T GL + NK      K K RA
Sbjct: 97  IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERA 156

Query: 132 ERFGL---SASVTTDDEAKKKARLARF------SSTSKPDPQEEEKRKARAIRF 174
           +RFGL   S S  ++D+ K K R  RF      + T   +  E +KRK RA RF
Sbjct: 157 QRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

[Close]
BLAST of Lsi01G013760 vs. ExPASy Swiss-Prot
Match: Q5R4V4 (SAP domain-containing ribonucleoprotein OS=Pongo abelii OX=9601 GN=SARNP PE=2 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 0 

Query: 72  VTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGST-TNGLGASNK--TEEVKRKARA 131
           +   +R  +RAERF + V L  E K+ +RA RFG+ S  T GL + NK      K K RA
Sbjct: 97  IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERA 156

Query: 132 ERFGL---SASVTTDDEAKKKARLARF------SSTSKPDPQEEEKRKARAIRF 174
           +RFGL   S S  ++D+ K K R  RF      + T   +  E +KRK RA RF
Sbjct: 157 QRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

[Close]
BLAST of Lsi01G013760 vs. ExPASy Swiss-Prot
Match: Q9D1J3 (SAP domain-containing ribonucleoprotein OS=Mus musculus OX=10090 GN=Sarnp PE=1 SV=3)

HSP 1 Score: 45.8 bits (107), Expect = 6.7e-04
Identity = 45/114 (39.47%), Postives = 60/114 (52.63%), Query Frame = 0 

Query: 72  VTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGST-TNGLGASNK--TEEVKRKARA 131
           +   +R  +RAERF + V L  E K+ +RA RFG+ S  T GL +  K      K K RA
Sbjct: 97  IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERA 156

Query: 132 ERFGL---SASVTTDDEAKKKARLARF------SSTSKPDPQEEEKRKARAIRF 174
           +RFGL   S S  ++D+ K K R  RF      + T   +  E +KRK RA RF
Sbjct: 157 QRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

[Close]
BLAST of Lsi01G013760 vs. ExPASy Swiss-Prot
Match: Q498U4 (SAP domain-containing ribonucleoprotein OS=Rattus norvegicus OX=10116 GN=Sarnp PE=1 SV=3)

HSP 1 Score: 45.8 bits (107), Expect = 6.7e-04
Identity = 45/114 (39.47%), Postives = 60/114 (52.63%), Query Frame = 0 

Query: 72  VTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGST-TNGLGASNK--TEEVKRKARA 131
           +   +R  +RAERF + V L  E K+ +RA RFG+ S  T GL +  K      K K RA
Sbjct: 97  IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERA 156

Query: 132 ERFGL---SASVTTDDEAKKKARLARF------SSTSKPDPQEEEKRKARAIRF 174
           +RFGL   S S  ++D+ K K R  RF      + T   +  E +KRK RA RF
Sbjct: 157 QRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

[Close]
BLAST of Lsi01G013760 vs. ExPASy TrEMBL
Match: A0A0A0L0R4 (Tho1_MOS11_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G293070 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.2e-90
Identity = 191/204 (93.63%), Postives = 195/204 (95.59%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVA AGLNDISNSKNPLGENPSQTL+ TISSSAQPPASVPPSSTDGGSSKE DESK  
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLETTISSSAQPPASVPPSSTDGGSSKEGDESKCA 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
           GK S EDDGAPV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+TTNGLGASNKTE
Sbjct: 61  GKPSAEDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
           LTQVDGKGNVETIAD AGK+GGGA
Sbjct: 181 LTQVDGKGNVETIADVAGKSGGGA 204

[Close]
BLAST of Lsi01G013760 vs. ExPASy TrEMBL
Match: A0A5A7TZD8 (Protein MODIFIER OF SNC1 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001340 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.1e-89
Identity = 189/204 (92.65%), Postives = 194/204 (95.10%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVA AGLNDISNSKNPLGENPSQTL+PTISSSAQ PASVPPSSTDGGSSKE DESK  
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLEPTISSSAQTPASVPPSSTDGGSSKEGDESKCS 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
           GK S  DDGAPV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+TTNGLGASNKTE
Sbjct: 61  GKPSAGDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
           +TQVDGKGNVETIAD AGK+GGGA
Sbjct: 181 VTQVDGKGNVETIADVAGKSGGGA 204

[Close]
BLAST of Lsi01G013760 vs. ExPASy TrEMBL
Match: A0A1S3BHQ8 (protein MODIFIER OF SNC1 11-like OS=Cucumis melo OX=3656 GN=LOC103489757 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.1e-89
Identity = 189/204 (92.65%), Postives = 194/204 (95.10%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVA AGLNDISNSKNPLGENPSQTL+PTISSSAQ PASVPPSSTDGGSSKE DESK  
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLEPTISSSAQTPASVPPSSTDGGSSKEGDESKCS 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
           GK S  DDGAPV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+TTNGLGASNKTE
Sbjct: 61  GKPSAGDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
           +TQVDGKGNVETIAD AGK+GGGA
Sbjct: 181 VTQVDGKGNVETIADVAGKSGGGA 204

[Close]
BLAST of Lsi01G013760 vs. ExPASy TrEMBL
Match: A0A6J1GD78 (protein MODIFIER OF SNC1 11-like OS=Cucurbita moschata OX=3662 GN=LOC111453127 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.0e-87
Identity = 186/204 (91.18%), Postives = 191/204 (93.63%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVASAG+NDISNSKNPLGENPSQTLDPTISSSAQPP SVP SSTDGGSSKE DESKG 
Sbjct: 1   MATVASAGINDISNSKNPLGENPSQTLDPTISSSAQPPVSVPLSSTDGGSSKEGDESKGS 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
            K SVE DG PV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+TTNGLGASNK+E
Sbjct: 61  DKTSVEGDGEPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKSE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGL ASV TDDEAKKKARL RFSSTSKPD QEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLPASVATDDEAKKKARLGRFSSTSKPDSQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
           LTQVDGKGN+ETIAD AGKAGGGA
Sbjct: 181 LTQVDGKGNIETIADIAGKAGGGA 204

[Close]
BLAST of Lsi01G013760 vs. ExPASy TrEMBL
Match: A0A6J1IR28 (protein MODIFIER OF SNC1 11-like OS=Cucurbita maxima OX=3661 GN=LOC111477977 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.5e-87
Identity = 185/204 (90.69%), Postives = 190/204 (93.14%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVASAG+NDISNSKN LGENPSQTLDPTISSSAQPP SVP SSTDGGSSKE DESKG 
Sbjct: 1   MATVASAGINDISNSKNSLGENPSQTLDPTISSSAQPPVSVPLSSTDGGSSKEMDESKGS 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
            K SVE DG PV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+TTNGLGASNK+E
Sbjct: 61  DKTSVEGDGEPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKSE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGL ASV TDDEAKKKARL RFSSTSKPD QEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLPASVATDDEAKKKARLGRFSSTSKPDSQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
           LTQVDGKGN+ETIAD AGKAGGGA
Sbjct: 181 LTQVDGKGNIETIADIAGKAGGGA 204

[Close]
BLAST of Lsi01G013760 vs. NCBI nr
Match: XP_038882639.1 (protein MODIFIER OF SNC1 11 [Benincasa hispida])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 193/204 (94.61%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVASAGLNDISNSK+PLGENPSQTLDPTISSSAQPPASVP SSTDGGSSK+RDESKG 
Sbjct: 1   MATVASAGLNDISNSKSPLGENPSQTLDPTISSSAQPPASVPSSSTDGGSSKDRDESKGS 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
           GKASVE DGAPV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+ TNGLGASNKTE
Sbjct: 61  GKASVEGDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTATNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
            TQ+DGKGNVETIAD AGKAGGGA
Sbjct: 181 PTQMDGKGNVETIADVAGKAGGGA 204

[Close]
BLAST of Lsi01G013760 vs. NCBI nr
Match: XP_031740008.1 (protein MODIFIER OF SNC1 11 [Cucumis sativus] >KGN54197.1 hypothetical protein Csa_017918 [Cucumis sativus])

HSP 1 Score: 341.7 bits (875), Expect = 4.5e-90
Identity = 191/204 (93.63%), Postives = 195/204 (95.59%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVA AGLNDISNSKNPLGENPSQTL+ TISSSAQPPASVPPSSTDGGSSKE DESK  
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLETTISSSAQPPASVPPSSTDGGSSKEGDESKCA 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
           GK S EDDGAPV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+TTNGLGASNKTE
Sbjct: 61  GKPSAEDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
           LTQVDGKGNVETIAD AGK+GGGA
Sbjct: 181 LTQVDGKGNVETIADVAGKSGGGA 204

[Close]
BLAST of Lsi01G013760 vs. NCBI nr
Match: XP_008447291.1 (PREDICTED: protein MODIFIER OF SNC1 11-like [Cucumis melo] >KAA0047316.1 protein MODIFIER OF SNC1 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 337.8 bits (865), Expect = 6.5e-89
Identity = 189/204 (92.65%), Postives = 194/204 (95.10%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVA AGLNDISNSKNPLGENPSQTL+PTISSSAQ PASVPPSSTDGGSSKE DESK  
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLEPTISSSAQTPASVPPSSTDGGSSKEGDESKCS 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
           GK S  DDGAPV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+TTNGLGASNKTE
Sbjct: 61  GKPSAGDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
           +TQVDGKGNVETIAD AGK+GGGA
Sbjct: 181 VTQVDGKGNVETIADVAGKSGGGA 204

[Close]
BLAST of Lsi01G013760 vs. NCBI nr
Match: XP_022949856.1 (protein MODIFIER OF SNC1 11-like [Cucurbita moschata] >XP_022949857.1 protein MODIFIER OF SNC1 11-like [Cucurbita moschata] >XP_022949858.1 protein MODIFIER OF SNC1 11-like [Cucurbita moschata] >KAG6603695.1 Protein MODIFIER OF SNC1 11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033871.1 Protein MODIFIER OF SNC1 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.8 bits (852), Expect = 2.1e-87
Identity = 186/204 (91.18%), Postives = 191/204 (93.63%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVASAG+NDISNSKNPLGENPSQTLDPTISSSAQPP SVP SSTDGGSSKE DESKG 
Sbjct: 1   MATVASAGINDISNSKNPLGENPSQTLDPTISSSAQPPVSVPLSSTDGGSSKEGDESKGS 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
            K SVE DG PV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+TTNGLGASNK+E
Sbjct: 61  DKTSVEGDGEPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKSE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGL ASV TDDEAKKKARL RFSSTSKPD QEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLPASVATDDEAKKKARLGRFSSTSKPDSQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
           LTQVDGKGN+ETIAD AGKAGGGA
Sbjct: 181 LTQVDGKGNIETIADIAGKAGGGA 204

[Close]
BLAST of Lsi01G013760 vs. NCBI nr
Match: XP_022977777.1 (protein MODIFIER OF SNC1 11-like [Cucurbita maxima] >XP_022977778.1 protein MODIFIER OF SNC1 11-like [Cucurbita maxima] >XP_022977779.1 protein MODIFIER OF SNC1 11-like [Cucurbita maxima])

HSP 1 Score: 330.1 bits (845), Expect = 1.4e-86
Identity = 185/204 (90.69%), Postives = 190/204 (93.14%), Query Frame = 0 

Query: 1   MATVASAGLNDISNSKNPLGENPSQTLDPTISSSAQPPASVPPSSTDGGSSKERDESKGP 60
           MATVASAG+NDISNSKN LGENPSQTLDPTISSSAQPP SVP SSTDGGSSKE DESKG 
Sbjct: 1   MATVASAGINDISNSKNSLGENPSQTLDPTISSSAQPPVSVPLSSTDGGSSKEMDESKGS 60

Query: 61  GKASVEDDGAPVTDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGSTTNGLGASNKTE 120
            K SVE DG PV+DVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG+TTNGLGASNK+E
Sbjct: 61  DKTSVEGDGEPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKSE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGL ASV TDDEAKKKARL RFSSTSKPD QEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLPASVATDDEAKKKARLGRFSSTSKPDSQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVDGKGNVETIADDAGKAGGGA 205
           LTQVDGKGN+ETIAD AGKAGGGA
Sbjct: 181 LTQVDGKGNIETIADIAGKAGGGA 204

[Close]
BLAST of Lsi01G013760 vs. TAIR 10
Match: AT5G02770.1 (unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). )

HSP 1 Score: 122.1 bits (305), Expect = 5.2e-28
Identity = 86/170 (50.59%), Postives = 110/170 (64.71%), Query Frame = 0 

Query: 20  GENPSQTLDPTISSSAQPPASVP---PSSTDGGSSKERDESKGPGKASVEDDG--APVTD 79
           GENP + +D   +   +    +       +D G  KE  +S G G  +  D G  +PV D
Sbjct: 21  GENPKKIVDLNTTELDRTDDILDGEVKGFSDSGEKKEETDSNGIGSTAGVDSGDISPVDD 80

Query: 80  VQRKMRRAERFGISVQLSEEEKRNSRAERFG--MGSTTNGLGASNKTEEVKRKARAERFG 139
           +Q+K+RRAERFG+SV+L+EEEKRNSRAERFG    +  NG   + K EE+KRKARA+RFG
Sbjct: 81  IQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELKRKARADRFG 140

Query: 140 L-SASVTTD---DEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTS 179
           + SA+ TTD   +EAKKKARLARF   +K D  EE KRKARA+RFS   S
Sbjct: 141 VPSATSTTDKTEEEAKKKARLARFGKETKVDSAEENKRKARALRFSKEAS 190

The following BLAST results are available for this feature:
BLAST of Lsi01G013760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LZ087.3e-2750.59Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana OX=3702 GN=MOS11 PE=1 SV=1[more]
P829791.3e-0440.35SAP domain-containing ribonucleoprotein OS=Homo sapiens OX=9606 GN=SARNP PE=1 SV... [more]
Q5R4V41.3e-0440.35SAP domain-containing ribonucleoprotein OS=Pongo abelii OX=9601 GN=SARNP PE=2 SV... [more]
Q9D1J36.7e-0439.47SAP domain-containing ribonucleoprotein OS=Mus musculus OX=10090 GN=Sarnp PE=1 S... [more]
Q498U46.7e-0439.47SAP domain-containing ribonucleoprotein OS=Rattus norvegicus OX=10116 GN=Sarnp P... [more]
BLAST of Lsi01G013760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0R42.2e-9093.63Tho1_MOS11_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G29307... [more]
A0A5A7TZD83.1e-8992.65Protein MODIFIER OF SNC1 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A1S3BHQ83.1e-8992.65protein MODIFIER OF SNC1 11-like OS=Cucumis melo OX=3656 GN=LOC103489757 PE=4 SV... [more]
A0A6J1GD781.0e-8791.18protein MODIFIER OF SNC1 11-like OS=Cucurbita moschata OX=3662 GN=LOC111453127 P... [more]
A0A6J1IR286.5e-8790.69protein MODIFIER OF SNC1 11-like OS=Cucurbita maxima OX=3661 GN=LOC111477977 PE=... [more]
BLAST of Lsi01G013760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882639.11.8e-9194.61protein MODIFIER OF SNC1 11 [Benincasa hispida][more]
XP_031740008.14.5e-9093.63protein MODIFIER OF SNC1 11 [Cucumis sativus] >KGN54197.1 hypothetical protein C... [more]
XP_008447291.16.5e-8992.65PREDICTED: protein MODIFIER OF SNC1 11-like [Cucumis melo] >KAA0047316.1 protein... [more]
XP_022949856.12.1e-8791.18protein MODIFIER OF SNC1 11-like [Cucurbita moschata] >XP_022949857.1 protein MO... [more]
XP_022977777.11.4e-8690.69protein MODIFIER OF SNC1 11-like [Cucurbita maxima] >XP_022977778.1 protein MODI... [more]
BLAST of Lsi01G013760 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02770.15.2e-2850.59unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; ... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040746THO1_MOS11, C-terminal domainPFAMPF18592Tho1_MOS11_Ccoord: 73..105
e-value: 2.8E-11
score: 43.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 6..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..187
IPR044209Protein MODIFIER OF SNC1 11PANTHERPTHR47701PROTEIN MODIFIER OF SNC1 11coord: 17..195

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G013760.1Lsi01G013760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016973 poly(A)+ mRNA export from nucleus
cellular_component GO:0005634 nucleus