Lsi01G013680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G013680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Location	chr01: 11868781 .. 11870004 (-)
RNA-Seq Expression	Lsi01G013680
Synteny	Lsi01G013680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCAACCCAATATCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCGCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGCTTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTAAAATCCAGTCCTCACCCTCTACCTCGATTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAACTTCAGGAGATTCTTAATCTTCAAGACTCTAAGCAGAAGGTTGCTAATGAGATACGTGCTAAAGATGCTAATCTTCGTGCTTTTGCTAATAAGCTCAAGGAAGCTGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGTGGATTATCAACGTCCTCGTCGGGTTAAAACGAAGGATGATGTTGACAATGAGTCTTTGTGTTCGACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTGGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGACAAAGCTATTGAGCCAATGATTGAGCCTCCAGCTCAGGCGCCAACAGATGCTAATCCTCTTTCTAATATGTCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTTCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGATATACCAATGCCCCCTCCTGGATGGAAGCCTGGAGACCCCGTGCCATTACCCCCAATGGATTCACTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

mRNA sequence

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCAACCCAATATCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCGCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGCTTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTAAAATCCAGTCCTCACCCTCTACCTCGATTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAACTTCAGGAGATTCTTAATCTTCAAGACTCTAAGCAGAAGGTTGCTAATGAGATACGTGCTAAAGATGCTAATCTTCGTGCTTTTGCTAATAAGCTCAAGGAAGCTGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGTGGATTATCAACGTCCTCGTCGGGTTAAAACGAAGGATGATGTTGACAATGAGTCTTTGTGTTCGACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTGGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGACAAAGCTATTGAGCCAATGATTGAGCCTCCAGCTCAGGCGCCAACAGATGCTAATCCTCTTTCTAATATGTCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTTCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGATATACCAATGCCCCCTCCTGGATGGAAGCCTGGAGACCCCGTGCCATTACCCCCAATGGATTCACTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

Coding sequence (CDS)

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCAACCCAATATCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCGCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGCTTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTAAAATCCAGTCCTCACCCTCTACCTCGATTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAACTTCAGGAGATTCTTAATCTTCAAGACTCTAAGCAGAAGGTTGCTAATGAGATACGTGCTAAAGATGCTAATCTTCGTGCTTTTGCTAATAAGCTCAAGGAAGCTGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGTGGATTATCAACGTCCTCGTCGGGTTAAAACGAAGGATGATGTTGACAATGAGTCTTTGTGTTCGACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTGGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGACAAAGCTATTGAGCCAATGATTGAGCCTCCAGCTCAGGCGCCAACAGATGCTAATCCTCTTTCTAATATGTCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTTCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGATATACCAATGCCCCCTCCTGGATGGAAGCCTGGAGACCCCGTGCCATTACCCCCAATGGATTCACTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

Protein sequence

MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Homology

[Close]

BLAST of Lsi01G013680 vs. ExPASy Swiss-Prot
Match: Q9LZ00 (Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 6.6e-136
Identity = 281/434 (64.75%), Postives = 337/434 (77.65%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPN+       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPT 120
                  S+   SS LL LLPPLPRAQALL QMA L SKLF+ SPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIR 180
           FL+S     P    + +PS++KEILS FN LQTQLFEAV ELQEIL+LQD+KQKVA EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQL 240
           +KD++L AFANKLK+AE+VLD+L DDY DY++P+R K  +DD DN+   S  STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 RLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA 300
           +L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMP 360
           VE+ +K +E +IEPP   P +A    ++SAI  LLPPNI VPSGWKPGMPVELPRD+P+P
Sbjct: 301 VENMEKKVEALIEPP--PPPEA---MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKPPEPIQVRHVQLDILDQDDDS 408
           PPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+PP+ IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

[Close]

BLAST of Lsi01G013680 vs. ExPASy Swiss-Prot
Match: Q54D00 (Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium discoideum OX=44689 GN=med4 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.6e-04
Identity = 57/187 (30.48%), Postives = 82/187 (43.85%), Query Frame = 0


Query: 114 STPSTSKEILSLFNVL--QTQLFE-AVAELQEILNLQDSKQKVANEIRAKDANLRAFANK 173
           S  +T   +L L N L    ++++  + +L++   +Q    ++  EI  KD  +   A  
Sbjct: 60  SNNATPNMVLQLMNHLIDVDKIYQNTLKKLEKHQKIQKEITEIQKEIEEKDKLISTLALN 119

Query: 174 LKEAEQVLD-VLFDDYVDYQRPRRVKTKDDVDNESL-----------CSTTVASQLRLSD 233
           LK+ E  L+  L  D V+          D + NE L               V  ++   D
Sbjct: 120 LKDIESFLENELSQDNVNINNG---NASDGIVNEVLIDLKQPDDAASMDNIVNREVSPED 179

Query: 234 ILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFA 273
           ++SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A
Sbjct: 180 LISYAHKISGTTSAP--FGYQPNAPLASLFKPPAPQDEMMRSSVLFTKPPPHVLKYYGLA 239

[Close]

BLAST of Lsi01G013680 vs. ExPASy TrEMBL
Match: A0A5A7TZC1 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=MED4 PE=3 SV=1)

HSP 1 Score: 717.2 bits (1850), Expect = 3.8e-203
Identity = 377/407 (92.63%), Postives = 389/407 (95.58%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFLTS+ QSSPST +DSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDY DYQRPRRVKT+   +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           NM+AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Lsi01G013680 vs. ExPASy TrEMBL
Match: A0A1S3BLP6 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491209 PE=3 SV=1)

HSP 1 Score: 717.2 bits (1850), Expect = 3.8e-203
Identity = 377/407 (92.63%), Postives = 389/407 (95.58%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFLTS+ QSSPST +DSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDY DYQRPRRVKT+   +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           NM+AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Lsi01G013680 vs. ExPASy TrEMBL
Match: A0A6J1CQ51 (Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=3673 GN=LOC111013711 PE=3 SV=1)

HSP 1 Score: 714.1 bits (1842), Expect = 3.2e-202
Identity = 372/408 (91.18%), Postives = 393/408 (96.32%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPN+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMA+LASKLFE SPNRSLWLTAFRGSLPTFL S+ QSSPST +D+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDY DY+RP+RVKTKDDV+N+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS 300
           APLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVEST+K IEPMIEPPA  PTDANPL+
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           N++AIQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 -QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
            QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of Lsi01G013680 vs. ExPASy TrEMBL
Match: A0A0A0KXB7 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659 GN=MED4 PE=3 SV=1)

HSP 1 Score: 706.4 bits (1822), Expect = 6.7e-200
Identity = 375/407 (92.14%), Postives = 386/407 (94.84%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFLTS+ QSSPST +DSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLKEAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDY DYQRPRR KT+ D +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPL 
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANPL- 300

Query: 301 NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
             +AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 --AAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 404

[Close]

BLAST of Lsi01G013680 vs. ExPASy TrEMBL
Match: A0A6J1HH73 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111463518 PE=3 SV=1)

HSP 1 Score: 680.6 bits (1755), Expect = 3.9e-192
Identity = 359/408 (87.99%), Postives = 383/408 (93.87%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  N+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMASLASKLFE  PNR+LWLTAFRGSLPTFL S+ QS+PST +DSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A E+RAKDA LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAG 240
           LFDDY DYQ  +RVKT DDV+NESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VEST+K IEPMIE PA  PTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDE 360
           + ++ IQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           PQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Lsi01G013680 vs. NCBI nr
Match: XP_038882754.1 (mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida])

HSP 1 Score: 732.6 bits (1890), Expect = 1.8e-207
Identity = 382/407 (93.86%), Postives = 394/407 (96.81%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NISSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFLTS+ QSSPSTS+DSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDY DYQRPRRVK KDD +NESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVEST+K IEPMIEPPA  PTDANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300

Query: 301 NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           NM++IQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPMDSLPVTRVDEP
Sbjct: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Lsi01G013680 vs. NCBI nr
Match: XP_008449288.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] >KAA0047287.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 717.2 bits (1850), Expect = 7.8e-203
Identity = 377/407 (92.63%), Postives = 389/407 (95.58%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFLTS+ QSSPST +DSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDY DYQRPRRVKT+   +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           NM+AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Lsi01G013680 vs. NCBI nr
Match: XP_022143910.1 (mediator of RNA polymerase II transcription subunit 4 [Momordica charantia])

HSP 1 Score: 714.1 bits (1842), Expect = 6.6e-202
Identity = 372/408 (91.18%), Postives = 393/408 (96.32%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPN+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMA+LASKLFE SPNRSLWLTAFRGSLPTFL S+ QSSPST +D+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDY DY+RP+RVKTKDDV+N+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS 300
           APLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVEST+K IEPMIEPPA  PTDANPL+
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           N++AIQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 -QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
            QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of Lsi01G013680 vs. NCBI nr
Match: XP_004142109.1 (mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN54188.1 hypothetical protein Csa_017920 [Cucumis sativus])

HSP 1 Score: 706.4 bits (1822), Expect = 1.4e-199
Identity = 375/407 (92.14%), Postives = 386/407 (94.84%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFLTS+ QSSPST +DSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLKEAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDY DYQRPRR KT+ D +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPL 
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANPL- 300

Query: 301 NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
             +AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 --AAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 404

[Close]

BLAST of Lsi01G013680 vs. NCBI nr
Match: XP_023518528.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 686.0 bits (1769), Expect = 1.9e-193
Identity = 361/408 (88.48%), Postives = 386/408 (94.61%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSK 120
           LPRAQALLLQMASLASKLFE  PNR+LWLTAFRGSLPTFL S+ QS+PST +DSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A E+RAKDA LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYVDYQRPRRVKTKDDVDNESLC-STTVASQLRLSDILSYAHRISYTTFAPPEFGAG 240
           LFDDY DYQ  +RVKT DDV+NESLC STTVASQL+LSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTTDDVENESLCSSTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VEST+K IEPMIEPPA  PTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDE 360
           + ++ IQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           PQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Lsi01G013680 vs. TAIR 10
Match: AT5G02850.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 485.3 bits (1248), Expect = 4.7e-137
Identity = 281/434 (64.75%), Postives = 337/434 (77.65%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPN+       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPT 120
                  S+   SS LL LLPPLPRAQALL QMA L SKLF+ SPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIR 180
           FL+S     P    + +PS++KEILS FN LQTQLFEAV ELQEIL+LQD+KQKVA EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQL 240
           +KD++L AFANKLK+AE+VLD+L DDY DY++P+R K  +DD DN+   S  STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 RLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA 300
           +L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMP 360
           VE+ +K +E +IEPP   P +A    ++SAI  LLPPNI VPSGWKPGMPVELPRD+P+P
Sbjct: 301 VENMEKKVEALIEPP--PPPEA---MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKPPEPIQVRHVQLDILDQDDDS 408
           PPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+PP+ IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

The following BLAST results are available for this feature:

BLAST of Lsi01G013680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ00	6.6e-136	64.75	Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX...	[more]
Q54D00	4.6e-04	30.48	Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium ...	[more]

BLAST of Lsi01G013680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZC1	3.8e-203	92.63	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLP6	3.8e-203	92.63	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1CQ51	3.2e-202	91.18	Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=...	[more]
A0A0A0KXB7	6.7e-200	92.14	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659...	[more]
A0A6J1HH73	3.9e-192	87.99	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3...	[more]

BLAST of Lsi01G013680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882754.1	1.8e-207	93.86	mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]	[more]
XP_008449288.1	7.8e-203	92.63	PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] ...	[more]
XP_022143910.1	6.6e-202	91.18	mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]	[more]
XP_004142109.1	1.4e-199	92.14	mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN5418...	[more]
XP_023518528.1	1.9e-193	88.48	mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pep...	[more]

BLAST of Lsi01G013680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02850.1	4.7e-137	64.75	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 157..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 389..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 128..269 e-value: 6.1E-8 score: 32.6
IPR019258	Mediator complex, subunit Med4	PANTHER	PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 50..406

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G013680.1	Lsi01G013680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity