Lsi01G013450 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G013450
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 11639965 .. 11641636 (+)
RNA-Seq ExpressionLsi01G013450
SyntenyLsi01G013450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCTTCTTCTTAAGTTTGGCCTTAGAACACGATACACCATTTTATCATATGTTCAGATGTCCATTAATTTGAGTTGGACTGTGCAGTGAGGGTTTCATGCTGTATAGGTTGTCCAAAATGTGTTACAAGTATTGAAGTAGAAGCTCTCTTTGGTTTTACTTCGGATAATTTTATGAGAAGGATCTCTATAGACTGTTCTACTTATCTCTGACATTTTGAATTCATCAAAATGTAGGCCATTATGTGAGCTTGTGTACCCTTTATTTTCTTTTGCCAGTGAAAGCGCTTGTGCATTTACTCATCTGAAAAACATATTTCTGGATATTACAAAAATATGAAAATTTAACCACCTTTTCCCCTAACCTTTTAGACTTGAAATTGGGGTTGCTTGCCATGATTGAACTGTTAAACCATGATTTATTATTAATGTCGATTTGGTTGACATATTTGTTACTATTTTGTCCTCCTGGAAATGTTTAGTCTATGGATTTACTTTTGTGTATTTTTAGGCTTGAATGTTTAGCCACTTCTATAGGGACAATTTTCATTATCTGTTATTCTCCCCATCATTTATAATGGACAATCAATTATTAGTTTGGGTATGCTGAGCAGTAAAATTTTCTTATTCTTTACAAACTATGAATTGAGGAAGCAAACTAGACTGGATGCATTATTGACAAATAGCAACGATGGTAGAATCATGTAATCAGTTGACTCTTAAAAACATCGGTGGTTATCTCAAATTTATTATGTGAATAGCATTAGTTTTGTGATATGTTTGTTTCCTGCCATTAGTTATTGTAGTTTATCCACTTTCTTGTTCAAATGTATGTAGAATACTGGACATTTGTGTAATTACATTGCTGACATAAAGATTTTGAGTCAAATCTGTGTGGTGGTTTCAGCTTGGAGAAGCGGTTCTTTGAAGTTTTGATTAGTCAATTAACTTGGATAATCATTTTAGCATTTGTTTCTTGATCCTTTCCCTTCGTACTAAGGAGATCATTGAAGTCATCTAGTTTGTAGTGACCTGCAGAAGAGTAGTTTAAGTTTTCCCCGTTACCATTAGTCTCCTTTGTTTTACTATAACCTTACCAAAGGAGGTGATTTATCATTCTCGAGTGAATTAGAACCTTTAAACCTTTCAACTGTTAAAGCAAATTCCGGAAATGATTCTAGCTTTTGGTAATTCTGTGGCTGTTGTTTCTCTCTAACATCCAGAAATAGTAGTTGTATACAATTTTTGGTCTTTTCTATTTCTGACGATTCCCCTGCATTCTTCCACGTGCATCTATAAACCACCATTCATTCAGCTTTTACCTTAATTAACTGTTTTCCTTATTTTGCTGTTCTTCCATTCTCCTTCTCTTCCTCTGCCTACATTAACTCCCTCCATCTTGATCACCAGAAAGAAGTATCCAATCTTTCTCTCTTCTTTCTTGAACAAGGAGGAAGAGGGAAGATTCAAATAAATTAGAAAAGCTTTGAAATTTCTTTTCATTCATTCCCTAGTAACGAACGCCTCAACCAATGGCGAAGAACATCATGAAATCGAAATATTGGGTTGAAGTTGCTCCAATTCTCATCTCTTACCCACAGAAACCCTCTACCATCCCATTGTTGGAACCCATTGTCGAAGATGTTGCCGAGGAATACGAAGACGATTCATAA

mRNA sequence

CTGCTTCTTCTTAAGTTTGGCCTTAGAACACGATACACCATTTTATCATATGTTCAGATGTCCATTAATTTGAGTTGGACTGTGCACATTAGTTTTGTGATATGTTTGTTTCCTGCCATTAGTTATTGTAGTTTATCCACTTTCTTGTTCAAATTTGCTCCAATTCTCATCTCTTACCCACAGAAACCCTCTACCATCCCATTGTTGGAACCCATTGTCGAAGATGTTGCCGAGGAATACGAAGACGATTCATAA

Coding sequence (CDS)

CTGCTTCTTCTTAAGTTTGGCCTTAGAACACGATACACCATTTTATCATATGTTCAGATGTCCATTAATTTGAGTTGGACTGTGCACATTAGTTTTGTGATATGTTTGTTTCCTGCCATTAGTTATTGTAGTTTATCCACTTTCTTGTTCAAATTTGCTCCAATTCTCATCTCTTACCCACAGAAACCCTCTACCATCCCATTGTTGGAACCCATTGTCGAAGATGTTGCCGAGGAATACGAAGACGATTCATAA

Protein sequence

LLLLKFGLRTRYTILSYVQMSINLSWTVHISFVICLFPAISYCSLSTFLFKFAPILISYPQKPSTIPLLEPIVEDVAEEYEDDS
Homology
[Close]
BLAST of Lsi01G013450 vs. ExPASy TrEMBL
Match: A0A0A0KK63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445160 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.8e-05
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 53 APILISYPQKPSTIPLLEPIVEDVAEEYEDDS 85
          APILISYPQKPSTIP LEPI EDV E+Y DDS
Sbjct: 64 APILISYPQKPSTIPSLEPIFEDVVEDYPDDS 95

[Close]
BLAST of Lsi01G013450 vs. NCBI nr
Match: KGN48151.1 (hypothetical protein Csa_003939 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 53 APILISYPQKPSTIPLLEPIVEDVAEEYEDDS 85
          APILISYPQKPSTIP LEPI EDV E+Y DDS
Sbjct: 64 APILISYPQKPSTIPSLEPIFEDVVEDYPDDS 95

The following BLAST results are available for this feature:
BLAST of Lsi01G013450 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G013450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK639.8e-0584.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445160 PE=4 SV=1[more]
BLAST of Lsi01G013450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48151.12.0e-0484.38hypothetical protein Csa_003939 [Cucumis sativus][more]
BLAST of Lsi01G013450 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G013450.1Lsi01G013450.1mRNA