Lsi01G012850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G012850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Histone H2B
Location	chr01: 11119852 .. 11120268 (-)
RNA-Seq Expression	Lsi01G012850
Synteny	Lsi01G012850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAGGGCTGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCCGCCGGCGAGAAGAAGCCTCGGGCGGAGAAAAAGCTTCCAAAAGATGCTTCGACGGAAAAGAAAAAGAAGAAGATGAAGAAGGGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAAGTTCATCCCGATATCGGAATCTCGAGCAAGGCTATGGGGATTATGAACAGTTTTATTAACGATATTTTCGAGAAACTGGCTCAGGAATCATCGCGATTGGCTAGGTATAACAAGAAGCCGACGATCACATCGAGGGAAATCCAAACGGCTGTACGACTTGTGCTTCCTGGTGAACTTGCGAAGCATGCTGTATCTGAGGGGACAAAAGCGGTTACCAAATTCACCAGTTCTTAG

mRNA sequence

ATGGCTCCAAGGGCTGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCCGCCGGCGAGAAGAAGCCTCGGGCGGAGAAAAAGCTTCCAAAAGATGCTTCGACGGAAAAGAAAAAGAAGAAGATGAAGAAGGGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAAGTTCATCCCGATATCGGAATCTCGAGCAAGGCTATGGGGATTATGAACAGTTTTATTAACGATATTTTCGAGAAACTGGCTCAGGAATCATCGCGATTGGCTAGGTATAACAAGAAGCCGACGATCACATCGAGGGAAATCCAAACGGCTGTACGACTTGTGCTTCCTGGTGAACTTGCGAAGCATGCTGTATCTGAGGGGACAAAAGCGGTTACCAAATTCACCAGTTCTTAG

Coding sequence (CDS)

ATGGCTCCAAGGGCTGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCCGCCGGCGAGAAGAAGCCTCGGGCGGAGAAAAAGCTTCCAAAAGATGCTTCGACGGAAAAGAAAAAGAAGAAGATGAAGAAGGGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAAGTTCATCCCGATATCGGAATCTCGAGCAAGGCTATGGGGATTATGAACAGTTTTATTAACGATATTTTCGAGAAACTGGCTCAGGAATCATCGCGATTGGCTAGGTATAACAAGAAGCCGACGATCACATCGAGGGAAATCCAAACGGCTGTACGACTTGTGCTTCCTGGTGAACTTGCGAAGCATGCTGTATCTGAGGGGACAAAAGCGGTTACCAAATTCACCAGTTCTTAG

Protein sequence

MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

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BLAST of Lsi01G012850 vs. ExPASy Swiss-Prot
Match: Q1SU99 (Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-56
Identity = 122/135 (90.37%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 4   RAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVLKQVH 63
           +AEKKPAEKKPAEKAPA EKKP+AEKK+ K+ S++KKKK+ KK VETYKIYIFKVLKQVH
Sbjct: 5   KAEKKPAEKKPAEKAPA-EKKPKAEKKISKEGSSDKKKKRTKKSVETYKIYIFKVLKQVH 64

Query: 64  PDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH 123
           PDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH
Sbjct: 65  PDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH 124

Query: 124 AVSEGTKAVTKFTSS 139
           AVSEGTKAVTKFTSS
Sbjct: 125 AVSEGTKAVTKFTSS 138

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BLAST of Lsi01G012850 vs. ExPASy Swiss-Prot
Match: Q9SI96 (Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-54
Identity = 125/151 (82.78%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPA----------GEKKPRAEKKLPKDAST---EKKKKKMKKG 60
           MAP+A KKPAEKKPAEKAPA           EKKP+A KKLPK+A T   EKKKK++KK 
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Lsi01G012850 vs. ExPASy Swiss-Prot
Match: Q9LFF6 (Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 212.6 bits (540), Expect = 2.8e-54
Identity = 122/139 (87.77%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MAPR-AEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVL 60
           MAP+ AEKKPA KKPAEKAPA EK P+AEKK+ K+  +EKKKKK KK +ETYKIYIFKVL
Sbjct: 1   MAPKAAEKKPAGKKPAEKAPA-EKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           L+KHAVSEGTKAVTKFTSS
Sbjct: 121 LSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 212.6 bits (540), Expect = 2.8e-54
Identity = 126/148 (85.14%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKP-------AEKAPAGEKKPRAEKKLPKD---ASTEKKKKKMKKGVET 60
           MAP+AEKKPAEKKP       AEKAPA EKKP+A KKLPK+   A+ +KKKK++KK VET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPA-EKKPKAGKKLPKEGGAAAGDKKKKRVKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Lsi01G012850 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 212.2 bits (539), Expect = 3.6e-54
Identity = 127/149 (85.23%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKP--------AEKAPAGEKKPRAEKKLPKD---ASTEKKKKKMKKGVE 60
           MAP+ EKKPAEKKP        AEKAPA EKKP+A KKLPK+   A+ EKKKK+ KK VE
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPA-EKKPKAGKKLPKEGGSAAGEKKKKRSKKSVE 60

Query: 61  TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 120
           TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 61  TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 120

Query: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Lsi01G012850 vs. ExPASy TrEMBL
Match: A0A5A7SJ40 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00680 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.1e-59
Identity = 132/139 (94.96%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDA-STEKKKKKMKKGVETYKIYIFKVL 60
           MAP+AEKKPAEKKPAEKAPAGEKKPRAEKK+PKDA S++KKKK+MKK VETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAEKAPAGEKKPRAEKKIPKDASSSDKKKKRMKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. ExPASy TrEMBL
Match: A0A1S3CH60 (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103500845 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.1e-59
Identity = 132/139 (94.96%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDA-STEKKKKKMKKGVETYKIYIFKVL 60
           MAP+AEKKPAEKKPAEKAPAGEKKPRAEKK+PKDA S++KKKK+MKK VETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAEKAPAGEKKPRAEKKIPKDASSSDKKKKRMKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. ExPASy TrEMBL
Match: A0A0A0KHB8 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G448180 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.6e-58
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDA-STEKKKKKMKKGVETYKIYIFKVL 60
           MAPRAEKKPAEKKPAEKAPAGEKKPRAEKK+ KDA S++KKKK+ KK VETYKIYIFKVL
Sbjct: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. ExPASy TrEMBL
Match: A0A5B6YYF6 (Histone H2B (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006170 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.7e-57
Identity = 130/140 (92.86%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDAST--EKKKKKMKKGVETYKIYIFKV 60
           MAP+AEKKPAEKKPAEKAPA EKKP+AEKKLPKDA+T  EKKKK+ KK VETYKIYIFKV
Sbjct: 19  MAPKAEKKPAEKKPAEKAPAAEKKPKAEKKLPKDATTTSEKKKKRSKKSVETYKIYIFKV 78

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
            KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG
Sbjct: 79  RKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 138

Query: 121 ELAKHAVSEGTKAVTKFTSS 139
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 139 ELAKHAVSEGTKAVTKFTSS 158

[Close]

BLAST of Lsi01G012850 vs. ExPASy TrEMBL
Match: A0A5N6QD49 (Histone H2B OS=Carpinus fangiana OX=176857 GN=FH972_001775 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVLK 60
           MAP+ EKKPAEKKPAEKAPA EKKPRAEKKLPK+ + +KKKK+ KK VETYKIYIFKVLK
Sbjct: 1   MAPKGEKKPAEKKPAEKAPAAEKKPRAEKKLPKEGAADKKKKRTKKSVETYKIYIFKVLK 60

Query: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL 120
           QVHPDIGISSKAMGIMNSFINDIFEKLAQE++RLARYNKKPTITSREIQTAVRLVLPGEL
Sbjct: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTAVRLVLPGEL 120

Query: 121 AKHAVSEGTKAVTKFTSS 139
           AKHAVSEGTKAVTKFTSS
Sbjct: 121 AKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: XP_038882933.1 (probable histone H2B.3 [Benincasa hispida])

HSP 1 Score: 240.7 bits (613), Expect = 7.3e-60
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVLK 60
           MAP+AEKK AEKKPAEKAPAGEKKPRAEKKLPKDAS+EKKKKKMKK VETYKIYIFKVLK
Sbjct: 1   MAPKAEKKLAEKKPAEKAPAGEKKPRAEKKLPKDASSEKKKKKMKKSVETYKIYIFKVLK 60

Query: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL 120
           QVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL
Sbjct: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL 120

Query: 121 AKHAVSEGTKAVTKFTSS 139
           AKHAVSEGTKAVTKFTSS
Sbjct: 121 AKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: XP_008462509.1 (PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0025319.1 putative histone H2B.3 [Cucumis melo var. makuwa] >TYK07350.1 putative histone H2B.3 [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 132/139 (94.96%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDA-STEKKKKKMKKGVETYKIYIFKVL 60
           MAP+AEKKPAEKKPAEKAPAGEKKPRAEKK+PKDA S++KKKK+MKK VETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAEKAPAGEKKPRAEKKIPKDASSSDKKKKRMKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: XP_004143285.1 (probable histone H2B.3 [Cucumis sativus] >KGN48209.1 hypothetical protein Csa_002726 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 2.0e-57
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDA-STEKKKKKMKKGVETYKIYIFKVL 60
           MAPRAEKKPAEKKPAEKAPAGEKKPRAEKK+ KDA S++KKKK+ KK VETYKIYIFKVL
Sbjct: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: KAE7997115.1 (hypothetical protein FH972_001775 [Carpinus fangiana])

HSP 1 Score: 229.2 bits (583), Expect = 2.2e-56
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVLK 60
           MAP+ EKKPAEKKPAEKAPA EKKPRAEKKLPK+ + +KKKK+ KK VETYKIYIFKVLK
Sbjct: 1   MAPKGEKKPAEKKPAEKAPAAEKKPRAEKKLPKEGAADKKKKRTKKSVETYKIYIFKVLK 60

Query: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL 120
           QVHPDIGISSKAMGIMNSFINDIFEKLAQE++RLARYNKKPTITSREIQTAVRLVLPGEL
Sbjct: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTAVRLVLPGEL 120

Query: 121 AKHAVSEGTKAVTKFTSS 139
           AKHAVSEGTKAVTKFTSS
Sbjct: 121 AKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: XP_021648882.1 (probable histone H2B.3 [Hevea brasiliensis])

HSP 1 Score: 228.8 bits (582), Expect = 2.9e-56
Identity = 128/138 (92.75%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVLK 60
           MAP+AEKKPAEKKPAEKAPA EKKPRAEKKLPK+ S++KK+KK KK VETYKIYIFKVLK
Sbjct: 1   MAPKAEKKPAEKKPAEKAPA-EKKPRAEKKLPKEGSSDKKRKKAKKSVETYKIYIFKVLK 60

Query: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL 120
           QVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGEL
Sbjct: 61  QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGEL 120

Query: 121 AKHAVSEGTKAVTKFTSS 139
           AKHAVSEGTKAVTKFTSS
Sbjct: 121 AKHAVSEGTKAVTKFTSS 137

[Close]

BLAST of Lsi01G012850 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-55
Identity = 125/151 (82.78%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKPAEKAPA----------GEKKPRAEKKLPKDAST---EKKKKKMKKG 60
           MAP+A KKPAEKKPAEKAPA           EKKP+A KKLPK+A T   EKKKK++KK 
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Lsi01G012850 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-55
Identity = 122/139 (87.77%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MAPR-AEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVL 60
           MAP+ AEKKPA KKPAEKAPA EK P+AEKK+ K+  +EKKKKK KK +ETYKIYIFKVL
Sbjct: 1   MAPKAAEKKPAGKKPAEKAPA-EKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           L+KHAVSEGTKAVTKFTSS
Sbjct: 121 LSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-54
Identity = 125/146 (85.62%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKP------AEKAPAGEKKPRAEKKLPKDAST--EKKKKKMKKGVETYK 60
           MAP+AEKKPAEKKP      AEKAPA EKKP+A KKLPK+A    +KKKK  KK VETYK
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 139
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Lsi01G012850 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 209.1 bits (531), Expect = 2.2e-54
Identity = 126/151 (83.44%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKP-----------AEKAPAGEKKPRAEKKLPKDAST--EKKKKKMKKG 60
           MAPRAEKKPAEKKP           AEKAPA EKKP+A KKLPK+A    +KKKK  KK 
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lsi01G012850 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-54
Identity = 125/151 (82.78%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MAPRAEKKPAEKKP-----------AEKAPAGEKKPRAEKKLPKDAST--EKKKKKMKKG 60
           MAP+AEKKPAEKKP           AEKAPA EKKP+A KKLPK+A    +KKKK  KK 
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

The following BLAST results are available for this feature:

BLAST of Lsi01G012850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1SU99	3.0e-56	90.37	Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q9SI96	1.6e-54	82.78	Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3	[more]
Q9LFF6	2.8e-54	87.77	Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3	[more]
O22582	2.8e-54	85.14	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q1S9I9	3.6e-54	85.23	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]

BLAST of Lsi01G012850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJ40	5.1e-59	94.96	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00680 PE...	[more]
A0A1S3CH60	5.1e-59	94.96	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103500845 PE=3 SV=1	[more]
A0A0A0KHB8	9.6e-58	94.24	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G448180 PE=3 SV=1	[more]
A0A5B6YYF6	3.7e-57	92.86	Histone H2B (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006170 PE=3 SV=1	[more]
A0A5N6QD49	1.1e-56	90.58	Histone H2B OS=Carpinus fangiana OX=176857 GN=FH972_001775 PE=3 SV=1	[more]

BLAST of Lsi01G012850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882933.1	7.3e-60	97.10	probable histone H2B.3 [Benincasa hispida]	[more]
XP_008462509.1	1.1e-58	94.96	PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0025319.1 putative histone ...	[more]
XP_004143285.1	2.0e-57	94.24	probable histone H2B.3 [Cucumis sativus] >KGN48209.1 hypothetical protein Csa_00...	[more]
KAE7997115.1	2.2e-56	90.58	hypothetical protein FH972_001775 [Carpinus fangiana]	[more]
XP_021648882.1	2.9e-56	92.75	probable histone H2B.3 [Hevea brasiliensis]	[more]

BLAST of Lsi01G012850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28720.1	1.2e-55	82.78	Histone superfamily protein	[more]
AT3G53650.1	2.0e-55	87.77	Histone superfamily protein	[more]
AT3G46030.1	1.3e-54	85.62	Histone superfamily protein	[more]
AT3G45980.1	2.2e-54	83.44	Histone superfamily protein	[more]
AT5G59910.1	2.9e-54	82.78	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 70..90 score: 75.74 coord: 92..109 score: 79.1 coord: 122..135 score: 92.65 coord: 109..122 score: 92.45 coord: 51..69 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 41..137 e-value: 2.3E-72 score: 256.4
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..138
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 106..128
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..114 e-value: 1.6E-22 score: 80.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 4..138 e-value: 8.2E-60 score: 202.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR23428:SF279	HISTONE H2B	coord: 5..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G012850.1	Lsi01G012850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity