Lsi01G012510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G012510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein ROS1 isoform X4
Location	chr01: 10703542 .. 10704701 (-)
RNA-Seq Expression	Lsi01G012510
Synteny	Lsi01G012510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTACTTCCAAGTTAATGAGGTAATAAGGAATTCTAACATGGTTTTATTATTTCACACCAAGCTTTAACTTTAAGTATTGGAACGTCGTGAATGTTGATTGTGTAGATCGTGAAGCCAAACTTACAGTGGAATCATCCTTATGCAGGTATTTGCTGATCATGATTCTAGCCTCAACCCAATTGATGTTCCTAGGAGTTGGTTATGGAAGCTCTCAAGGCGGACAGTGTACTTTGGAACATCCATACCAACAATATTCAAGGGTATGCATTGTAAAAGGTTATGGTTTCTTTTATCGTTTCTCTTTGAGTGTCAGTGACAGTGTCTCTGAAGAATGCATTTTTCATGTACTAGGTTTATCTACGGAAGAGATTCAAGGTTGCTTCTGGAAAGGTAACAATATCTAAGTCTATCGAAGAGTCTTTTGGAACTTCTTTTGCTAATTAGGAAGATATTTAATCAAATTCATCAAATTTAGTTCCTACAAAGTGAAATGAAGCTAAAATTTTCAGATGCATCTACATGCTTAGACTAGTTTATTAATTTGGTAACTTACACCTCTCTATCTGCAGTAGCTTCTAAAATATAACATCGTTCCTAAACTATGTTAGAGTTTGGTTTTATTGCCTTAACTTTTTAAAAAAAAAAAAAAAAAAAAAAAGAAGTAATTTCTTGATTGTTTCTAGGTCTTCCTCCAAGACAACTCAAAAGTTTGATGAAAATATGATTCAACATCTGTGTTTTACAGCTGATTGACGTGTTAAAAGGCAAACAAAATATCAATTTGATTCTTAATCTATAACTTTTAAAATTGGTCCTTTTGTTTAAAAAGTACATCCCATAGAATCAATCATATGTACTTTTAACTTCACAGTTTCATGTGGCCAACTGTAGCATCTACACTTCATGTGGCCGATGAAACAAGCCACTGTCTAATCCCCCACCTTCTGCCATGACTAAACTACAACCAAGTAGAGTGTTAATTATCGAAAGGAAACCCTTTTTGATCGAAGTTGATCCAACTTCCAGAGGCTCCCGAGTCAGACTCACCGAATCATCCAAAGACAAAGCCTTCTCCATTTCACTAAGATGGATCACAAATATTTTCAAGCCTCTCTTTACTTTGCCACTTAACCAGAATTCTTCATGGAACTAA

mRNA sequence

ATGGAACTTACTTCCAAGTTAATGAGGTATTTGCTGATCATGATTCTAGCCTCAACCCAATTGATGTTCCTAGGAGTTGGTTATGGAAGCTCTCAAGGCGGACAGTGTACTTTGGAACATCCATACCAACAATATTCAAGGGTTTATCTACGGAAGAGATTCAAGGTTGCTTCTGGAAAGCCACTGTCTAATCCCCCACCTTCTGCCATGACTAAACTACAACCAAGTAGAGTGTTAATTATCGAAAGGAAACCCTTTTTGATCGAAGTTGATCCAACTTCCAGAGGCTCCCGAGTCAGACTCACCGAATCATCCAAAGACAAAGCCTTCTCCATTTCACTAAGATGGATCACAAATATTTTCAAGCCTCTCTTTACTTTGCCACTTAACCAGAATTCTTCATGGAACTAA

Coding sequence (CDS)

ATGGAACTTACTTCCAAGTTAATGAGGTATTTGCTGATCATGATTCTAGCCTCAACCCAATTGATGTTCCTAGGAGTTGGTTATGGAAGCTCTCAAGGCGGACAGTGTACTTTGGAACATCCATACCAACAATATTCAAGGGTTTATCTACGGAAGAGATTCAAGGTTGCTTCTGGAAAGCCACTGTCTAATCCCCCACCTTCTGCCATGACTAAACTACAACCAAGTAGAGTGTTAATTATCGAAAGGAAACCCTTTTTGATCGAAGTTGATCCAACTTCCAGAGGCTCCCGAGTCAGACTCACCGAATCATCCAAAGACAAAGCCTTCTCCATTTCACTAAGATGGATCACAAATATTTTCAAGCCTCTCTTTACTTTGCCACTTAACCAGAATTCTTCATGGAACTAA

Protein sequence

MELTSKLMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGKPLSNPPPSAMTKLQPSRVLIIERKPFLIEVDPTSRGSRVRLTESSKDKAFSISLRWITNIFKPLFTLPLNQNSSWN

Homology

[Close]

BLAST of Lsi01G012510 vs. ExPASy TrEMBL
Match: A0A5A7SKP4 (Protein ROS1 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001400 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.6e-18
Identity = 50/60 (83.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MELTSKLMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGK 60
           + + S L RYLLIMILA TQLMFLGVGYGSSQGGQCTLEHPYQQYSRVY  KRFK ASGK
Sbjct: 920 LTVNSSLCRYLLIMILALTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYRPKRFKAASGK 979

[Close]

BLAST of Lsi01G012510 vs. NCBI nr
Match: KAA0025287.1 (protein ROS1 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-17
Identity = 50/60 (83.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MELTSKLMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGK 60
           + + S L RYLLIMILA TQLMFLGVGYGSSQGGQCTLEHPYQQYSRVY  KRFK ASGK
Sbjct: 920 LTVNSSLCRYLLIMILALTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYRPKRFKAASGK 979

[Close]

BLAST of Lsi01G012510 vs. NCBI nr
Match: XP_028060399.1 (protein ROS1A isoform X3 [Camellia sinensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 32/56 (57.14%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 7    LMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGKPL 63
            L R LL M LA TQL FLG+G+G  Q   CTLE  YQQY +VY RK F  A G+ L
Sbjct: 1862 LCRCLLTMNLALTQLPFLGLGFGICQDAWCTLEPLYQQYLKVYQRKAFNTAFGEAL 1917

The following BLAST results are available for this feature:

BLAST of Lsi01G012510 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G012510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKP4	9.6e-18	83.33	Protein ROS1 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lsi01G012510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025287.1	2.0e-17	83.33	protein ROS1 isoform X4 [Cucumis melo var. makuwa]	[more]
XP_028060399.1	1.5e-04	57.14	protein ROS1A isoform X3 [Camellia sinensis]	[more]

BLAST of Lsi01G012510 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G012510.1	Lsi01G012510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0080111	DNA demethylation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0035514	DNA demethylase activity
molecular_function	GO:0019104	DNA N-glycosylase activity
molecular_function	GO:0046872	metal ion binding