Lsi01G012420 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G012420
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S acidic ribosomal protein P2-like
Location	chr01: 10579425 .. 10582780 (+)
RNA-Seq Expression	Lsi01G012420
Synteny	Lsi01G012420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGGTTGCTGCTTATTTGCTTGCTGTTTTGGGTGGAAACAAAACCCCTTCTGCTCAAGATATCAACACCATTCTCGCCTCTGGTTCTTTCTTTTTTCTCTTCTCTCCTCTTCCTCTATTGTGGGTTTATTTATTTTTATTTTTTTTTGTCCATCATATACTTTGAAGACACTGGTTTAAATGCTTCTAAAACTAAGAAATGGAGTAGTCAAGGGCCCTAGTAAAATGAAACCTATATGGGTTTCTAGATATGGTTCCAGACTTCAAACACTTATTCCATCTACTTTTGTGTATATATAAAAAAATATATGAACATTTTTGCAGCTAAACCTTCTAGGGTTTCTTAAGTTGTTTCGTGAGATTAATGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGATTCAAACTTTTGAGCTTTTAGTTGAGCATATAACAGCTCAACTTTCTAGGGTTTCATAATAAAATCATTCTCGTGCTTTCGCTCACTATTTTCTCTCTGGCTCTTGCTCTCGGTTATTTTTCACCGTTGACTTCAGCTCGAGCCCTCATTATGATGGAGTTGAGAGTGAGGAAATATAGAGAGCAAGAGCAAGAGGGGCAAATGTTGGAGAGCAACAGTGTAGAAAATAGGAAGAAAGGTTTTGCTAAAACTTATTTTGAGATATTTAGTAATATCTTATTTCGACACAAATTTTTAGGTCATTCCGACGAAAACTCTCATTAGGTTGTTTAGTGTTTTCATTTTTATTTATTTATTTTTGAGAAATTTTTAAAAATAAAAAAATAAAGAAAACTATTTACACAAAACAGTAAAATTTTTAGATAATGATAATAGACCAAGTCTACAAGAGTCTATTAAATATGATAGAAATCTATAACTGATAGATGCTTATAAAAGTCTATCAATGTTTATGAGTATTTTTTTTTTGTTGCTATTTTCTATAAATAGTTTAACAATTTTTCTATGTGTGAAAATTTCTTATTTATTTATTATTTGTTGAAAGGAATATGTATAAACGATAAAAAAGTGGAGAACATAAATTTTGATACTAAAATTGAAATATGTCATGCTTGCTATTTTTAAAAGAGCTTCTTGGTCTATGAGCATCGTTAAACCTAGATCTCTTTTTTCTTTTATAAAATGTTTTTGTTTCTTTTCTTTTTGTAAAACCATTATTTGTTGGTTTCGGTTGTTATTTTTAATTAATATTTTGATATAAGACACTACACTATATCATTAATCCTTTTAAATTTCATTAAATGAGCATAACTCAACTGACATCAAGTATATACTATCAACCTTGAGATTAGAGATGTATAAAAGAATCTCTTGGAATTTTATCTCATTATTTCTTTACATTTTCTTTCATATGAACATTCGCAAAAAAACCCATCGAAATGTGTCACATGTGTATATACAATTGTTTTAATAAACTTGTCCTTGACATGTACTTGTAAGTTCTCTAAGAATAATGGTTTATCACTATCAGTTACTTTTGAGCTTTTTGCGACAAGACACAAATCTATCAAAACACAGAAATCTTTTGGTTTACATGACAAAATCCAAACCAACTAATATTAGTTGACTAGAATTAACAGAACTCATTTGGTTTGGTCCATTTTTTTACCCTTAGCTGAAAATCATCGTTGATTGGACAACCCATAACTTGTGAGAAACTATGCCTCTGACTTGTTCTATACATAAAAAATTTCTATGCATCACAACCACTAACCATATCTTACTAGAGTTAAATAACTCACTAAACTTTCACTTTTGTGCTAATAAGTTTAACTTTGAGTCTATTAAGTTTTGGGTATATTCATCATTTTTTATAATTAATGAAAAGATTAACATAGAATTGAATTTGTGTGTAATAGAACATTGTACTTTCAATTTTATGTCAAGTAGTTTTGTGAATTCAAAAATATTAGATACTAAATGAAAAGCTTAGAGTCTCATTAGACATTTTTTAAAGTTTAGGAATGTATATGATGCAAGCGTAAAAGTTTAAGTGGGTAATTTTAACCAAAACTTAATGTCCATCAGCTCCATGCTTTTTGAAGTATAACTGAAGGTCAATGGTTAACATGTTCACAGTTGGAGCTGAAGCTGACCATGAAAAGATTGAGCTGCTTCTTTCTCAAGTTAAGGACAAGGATGTAACTGAGCTTATTGCCTGTGGGAGAGAGAAGATGGCATCATTACCTACCGGTGGCCTCGTTGCAGCTGCTGTGGGCGCAACGGCCTCTACCGTCGATGTTGCTGCTCCTGTTGCAGCTGAGGCTAAGAAAGAGGAGAAAGAAGATGCTGTGGACTCTGATGAAGTAAATTACTTTCCCCTTAAAACTTTGTATCAGTTGTTAGAATATAATTTATCATCAGTTTTTGACTTTGTTTTCTTATTTGTGTTACAGGACATTTGTTTCTCTCTATTTGAAGATGAGTAAGGAATTGACTTCCTTGTGTTTTCGCTTGGAATTAGGCTTTCTAATGGCTTTGTTTTGTTAAACATTATGCTACTTTATTCTCTGTTGTGTCAGACATGGTTGTTGAAATCATCAGACTTTCTTTCTTTGATTGATGAATATCTTTTTGCTTAGAGTAAGAACGAGCTTTTATCTTTATTACTATCTGATCACTAGTTGGTCTATATTATGCTATTTCTCTTATTTCTTGCTCAATTTTCTCCTACGTCTTGATTATTTTACTTGAAGAGGATTAGGAAAATTGGATCATGAAACCTAGATCAGTAAAAATAAATTGTTTGACATAGTGCAGCTTTCTTCCTTTCTAAACTTAAAATTCTACTTTTTCTATGTTTATTGTTGTTGTTATTATTATTATTTTGAGTTAAACCATATGTGGAGTGAAATAATTTATATTTATAGCCTCTTGATTGATAGTTGTTAGTTTAGCCATGTTTATGTTGACAAAGGTCGCAGATTCAATCCCTCACACTGTAGTTGTACACTAAGAAAAAGAAAAAAAAATGGAGAGCTATGGGCACTTGAGCTTCTGAAAAATGAGAAACTAAAAGCAGGAAAAAATATCTTCTAAAAATTGGGAGTTTTTTTTTTTTAGACATTTTAAGTGTAATTATTTACTCGTAAATTATTATAATTGTTACTATTACTTTGAGTTGTGAATAATTTAGAGATGGTGAATCCAACTATCAACATTAATGATAATTTTTGTTTAGACTAATTGCTTCATCTCTATGCTATATAGTTTCTTCTTTTTAACCCAAAATCATTTAAAACATTCTTGTTCGAACTACACTTTATTTGAAACATTTGATAATATTCATTTTCAGATTCTGCTCAACTTTCCAATGACATACATGATGTAA

mRNA sequence

ATGAAGGACAAGGATGTAACTGAGCTTATTGCCTGTGGGAGAGAGAAGATGGCATCATTACCTACCGGTGGCCTCGTTGCAGCTGCTGTGGGCGCAACGGCCTCTACCGTCGATGTTGCTGCTCCTGTTGCAGCTGAGGCTAAGAAAGAGGAGAAAGAAGATGCTGTGGACTCTGATGAAATTCTGCTCAACTTTCCAATGACATACATGATGTAA

Coding sequence (CDS)

ATGAAGGACAAGGATGTAACTGAGCTTATTGCCTGTGGGAGAGAGAAGATGGCATCATTACCTACCGGTGGCCTCGTTGCAGCTGCTGTGGGCGCAACGGCCTCTACCGTCGATGTTGCTGCTCCTGTTGCAGCTGAGGCTAAGAAAGAGGAGAAAGAAGATGCTGTGGACTCTGATGAAATTCTGCTCAACTTTCCAATGACATACATGATGTAA

Protein sequence

MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDEILLNFPMTYMM

Homology

[Close]

BLAST of Lsi01G012420 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-06
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 60
           +K KD+TELIA GRE++AS+P+GG VA A  A     D  A  A E KKEEK +    +E
Sbjct: 46  VKGKDITELIASGRERLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSEEESDEE 105

Query: 61  I 62
           +
Sbjct: 106 L 106

[Close]

BLAST of Lsi01G012420 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEK-EDAVDSD 60
           +KDKD+TE+IA GRE+++S+P+GG  A  +GA A+     A  A EAKKEEK E+  +SD
Sbjct: 46  LKDKDITEVIAAGRERLSSVPSGG-GAIDMGAPAAVAGGGAAPAEEAKKEEKVEEKEESD 105

[Close]

BLAST of Lsi01G012420 vs. ExPASy Swiss-Prot
Match: Q9LUK2 (60S acidic ribosomal protein P2-5 OS=Arabidopsis thaliana OX=3702 GN=RPP2E PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-05
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPT-GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSD 60
           +KD+DVTELIA GREKMA+L + GG VA A G        A P + E+KK+E+E     D
Sbjct: 46  IKDRDVTELIAVGREKMAALSSGGGAVAVASGGGGGAAPAAEPASVESKKKEEEKEESED 105

[Close]

BLAST of Lsi01G012420 vs. ExPASy Swiss-Prot
Match: P08094 (60S acidic ribosomal protein P2-alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpp201 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-05
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 60
           +  KD+ ELIA G EK+A++PTGG  +AA  A A     AAP A EA KEE ++  +SDE
Sbjct: 46  LNGKDIDELIAAGNEKLATVPTGGAASAAPAAAAGG---AAPAAEEAAKEEAKEEEESDE 102

[Close]

BLAST of Lsi01G012420 vs. ExPASy Swiss-Prot
Match: O14317 (60S acidic ribosomal protein P2-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpp203 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-05
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 4   KDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 61
           KD+ ELIA G EK+A++P+GG  AAA  A A     AAP A EA KEE ++  +SDE
Sbjct: 49  KDIDELIAAGNEKLATVPSGGAAAAAAPAAAGG---AAPAAEEAAKEEAKEEEESDE 102

[Close]

BLAST of Lsi01G012420 vs. ExPASy TrEMBL
Match: A0A5A7SLD3 (60S acidic ribosomal protein P2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001160 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.2e-15
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 60
          +K KD+TELIACGREKMASLPTG +VAA V A  STVD AAPVAAEAKKEEK+DA+DSDE
Sbjct: 23 VKGKDITELIACGREKMASLPTGAVVAAVVAAVPSTVDAAAPVAAEAKKEEKDDAMDSDE 82

[Close]

BLAST of Lsi01G012420 vs. ExPASy TrEMBL
Match: A0A1S4E3U5 (60S acidic ribosomal protein P2-like OS=Cucumis melo OX=3656 GN=LOC103500881 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.2e-15
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 60
           +K KD+TELIACGREKMASLPTG +VAA V A  STVD AAPVAAEAKKEEK+DA+DSDE
Sbjct: 46  VKGKDITELIACGREKMASLPTGAVVAAVVAAVPSTVDAAAPVAAEAKKEEKDDAMDSDE 105

[Close]

BLAST of Lsi01G012420 vs. ExPASy TrEMBL
Match: A0A0A0KEV8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G451480 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-13
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 60
           +K KD+TELIA  REKMASLPTG +VAAAV A  STVD AAPV AEAKKEEK+DA+DSDE
Sbjct: 67  LKGKDITELIAYAREKMASLPTGAVVAAAVAAVPSTVDTAAPVGAEAKKEEKDDAMDSDE 126

[Close]

BLAST of Lsi01G012420 vs. ExPASy TrEMBL
Match: A0A7J6VW13 (60S acidic ribosomal protein P2 OS=Thalictrum thalictroides OX=46969 GN=FRX31_021533 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 60
           +K KD+TEL+A GREK+AS+P+GG    AV A+      AAP AAEAKKEEK +  DS+E
Sbjct: 79  VKGKDITELVASGREKLASVPSGGGAPMAVAASGGGAPAAAPAAAEAKKEEKVEEEDSEE 138

[Close]

BLAST of Lsi01G012420 vs. ExPASy TrEMBL
Match: A0A7N2M5M5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGA-----TASTVDVAAPVAAEAKKEEKEDA 60
           +K KD+TELIA GREK+AS+P+GG  A AV       T +T   AAP AAE+KKEEKE++
Sbjct: 46  VKGKDITELIAAGREKLASVPSGGAAAVAVAVAGGADTGATAAAAAPAAAESKKEEKEES 105

[Close]

BLAST of Lsi01G012420 vs. NCBI nr
Match: KAA0025275.1 (60S acidic ribosomal protein P2-like [Cucumis melo var. makuwa] >TYK07392.1 60S acidic ribosomal protein P2-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 60
          +K KD+TELIACGREKMASLPTG +VAA V A  STVD AAPVAAEAKKEEK+DA+DSDE
Sbjct: 23 VKGKDITELIACGREKMASLPTGAVVAAVVAAVPSTVDAAAPVAAEAKKEEKDDAMDSDE 82

[Close]

BLAST of Lsi01G012420 vs. NCBI nr
Match: XP_016902906.1 (PREDICTED: 60S acidic ribosomal protein P2-like [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 60
           +K KD+TELIACGREKMASLPTG +VAA V A  STVD AAPVAAEAKKEEK+DA+DSDE
Sbjct: 46  VKGKDITELIACGREKMASLPTGAVVAAVVAAVPSTVDAAAPVAAEAKKEEKDDAMDSDE 105

[Close]

BLAST of Lsi01G012420 vs. NCBI nr
Match: XP_004143377.1 (60S acidic ribosomal protein P2 [Cucumis sativus] >XP_031743701.1 60S acidic ribosomal protein P2 [Cucumis sativus] >KGN48245.1 hypothetical protein Csa_002919 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 7.7e-13
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE 60
           +K KD+TELIA  REKMASLPTG +VAAAV A  STVD AAPV AEAKKEEK+DA+DSDE
Sbjct: 67  LKGKDITELIAYAREKMASLPTGAVVAAAVAAVPSTVDTAAPVGAEAKKEEKDDAMDSDE 126

[Close]

BLAST of Lsi01G012420 vs. NCBI nr
Match: XP_028946317.1 (60S acidic ribosomal protein P2-2-like [Malus domestica] >XP_028946318.1 60S acidic ribosomal protein P2-2-like [Malus domestica])

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEK-EDAVDSD 60
           +K KD+TELIA GREK+AS+P GG  A AV AT S    AAP AAEAKKEEK E+  +SD
Sbjct: 46  VKGKDITELIASGREKLASVPAGGGGAVAVAATGSGAAAAAPAAAEAKKEEKVEEKEESD 105

[Close]

BLAST of Lsi01G012420 vs. NCBI nr
Match: XP_030926970.1 (60S acidic ribosomal protein P2-like [Quercus lobata])

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-06
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPTGGLVAAAVGA-----TASTVDVAAPVAAEAKKEEKEDA 60
           +K KD+TELIA GREK+AS+P+GG  A AV       T +T   AAP AAE+KKEEKE++
Sbjct: 46  VKGKDITELIAAGREKLASVPSGGAAAVAVAVAGGADTGATAAAAAPAAAESKKEEKEES 105

[Close]

BLAST of Lsi01G012420 vs. TAIR 10
Match: AT5G40040.1 (60S acidic ribosomal protein family )

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPT-GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSD 60
           +KD+DVTELIA GREKMA+L + GG VA A G        A P + E+KK+E+E     D
Sbjct: 46  IKDRDVTELIAVGREKMAALSSGGGAVAVASGGGGGAAPAAEPASVESKKKEEEKEESED 105

[Close]

BLAST of Lsi01G012420 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 47.0 bits (110), Expect = 7.4e-06
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 4   KDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPV-AAEAKKEEKEDAVD 58
           KD+ ELIA GREK+AS+P+GG VA +   ++     AAP    EAKKEEKE++ D
Sbjct: 49  KDIAELIASGREKLASVPSGGGVAVSAAPSSGGGGAAAPAEKKEAKKEEKEESDD 103

[Close]

BLAST of Lsi01G012420 vs. TAIR 10
Match: AT3G44590.1 (60S acidic ribosomal protein family )

HSP 1 Score: 47.0 bits (110), Expect = 7.4e-06
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 4   KDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPV-AAEAKKEEKEDAVD 58
           KD+ ELIA GREK+AS+P+GG VA +   ++     AAP    EAKKEEKE++ D
Sbjct: 49  KDIAELIASGREKLASVPSGGGVAVSAAPSSGGGGAAAPAEKKEAKKEEKEESDD 103

[Close]

BLAST of Lsi01G012420 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPT--GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDS 60
           +K KD+ ELIA GREK+AS+P+  GG VA A   +       AP A   K+E+KE+  +S
Sbjct: 46  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEES 105

[Close]

BLAST of Lsi01G012420 vs. TAIR 10
Match: AT2G27720.2 (60S acidic ribosomal protein family )

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 1   MKDKDVTELIACGREKMASLPT--GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDS 60
           +K KD+ ELIA GREK+AS+P+  GG VA A   +       AP A   K+E+KE+  +S
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEES 120

The following BLAST results are available for this feature:

BLAST of Lsi01G012420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41099	2.5e-06	49.18	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
O24415	1.2e-05	52.46	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
Q9LUK2	2.1e-05	49.18	60S acidic ribosomal protein P2-5 OS=Arabidopsis thaliana OX=3702 GN=RPP2E PE=3 ...	[more]
P08094	2.1e-05	50.00	60S acidic ribosomal protein P2-alpha OS=Schizosaccharomyces pombe (strain 972 /...	[more]
O14317	2.7e-05	52.63	60S acidic ribosomal protein P2-C OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Lsi01G012420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLD3	5.2e-15	80.00	60S acidic ribosomal protein P2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S4E3U5	5.2e-15	80.00	60S acidic ribosomal protein P2-like OS=Cucumis melo OX=3656 GN=LOC103500881 PE=...	[more]
A0A0A0KEV8	3.7e-13	76.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G451480 PE=3 SV=1	[more]
A0A7J6VW13	2.0e-06	56.67	60S acidic ribosomal protein P2 OS=Thalictrum thalictroides OX=46969 GN=FRX31_02...	[more]
A0A7N2M5M5	2.0e-06	54.69	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of Lsi01G012420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025275.1	1.1e-14	80.00	60S acidic ribosomal protein P2-like [Cucumis melo var. makuwa] >TYK07392.1 60S ...	[more]
XP_016902906.1	1.1e-14	80.00	PREDICTED: 60S acidic ribosomal protein P2-like [Cucumis melo]	[more]
XP_004143377.1	7.7e-13	76.67	60S acidic ribosomal protein P2 [Cucumis sativus] >XP_031743701.1 60S acidic rib...	[more]
XP_028946317.1	2.4e-06	62.30	60S acidic ribosomal protein P2-2-like [Malus domestica] >XP_028946318.1 60S aci...	[more]
XP_030926970.1	4.1e-06	54.69	60S acidic ribosomal protein P2-like [Quercus lobata]	[more]

BLAST of Lsi01G012420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40040.1	1.5e-06	49.18	60S acidic ribosomal protein family	[more]
AT3G44590.2	7.4e-06	52.73	60S acidic ribosomal protein family	[more]
AT3G44590.1	7.4e-06	52.73	60S acidic ribosomal protein family	[more]
AT2G27720.1	1.1e-04	45.16	60S acidic ribosomal protein family	[more]
AT2G27720.2	1.1e-04	45.16	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 1..59 e-value: 1.7E-7 score: 31.7
None	No IPR available	PANTHER	PTHR21141:SF96	60S ACIDIC RIBOSOMAL PROTEIN P2B	coord: 1..61
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G012420.1	Lsi01G012420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome