Lsi01G012060 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G012060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Casparian strip membrane protein 1
Location	chr01: 10281962 .. 10283632 (-)
RNA-Seq Expression	Lsi01G012060
Synteny	Lsi01G012060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACCGGCGAATCGACCGCCATTGACGTTGCCCCTGAGACCAACAACAGCGGCCCAATTGGGAAGAAGAAGAGCACGACGCCGTTGCTGGCGGCGCCGGTGCCAGTGCCAGACAGGGGAACCCACCGGATGAAACGTGGGCTTGCGATTTTCGACTTCGTTTTGAGAATCGGCGCACTTGCGTCGGCGGTAGCCGCCGCCGCCGCCATGGGAACCAGTGGCCAAACGTTGCCGTTTTTCACTCAGTTCTTCCAGTTCGAGGCTAGCTACGACGATTTGCCCACTTTCCAGTTGAGTTTATTTATTTATTTATTTTTATTTTATTTTATTTTTTTCGTTTATAATATAATAAATAATTGAATTGAAATTTCAGGTTTTTTGTGGTGGCAATGGGAATAGTTGCGGGATATGTGGTTTTGTCGATTCCATTCTCAATTGTTTGTATTGTTCGTCCCCATGCTGCTGGACCTCGCGTTCTCTTGTTGATTTTAGATGCAGTAAGTGTTTATTTTCACCATAAATTTTAAATTTAACCTCATAGTTAAAAAAAATGTTTCTTCAAAAAAAAAAAAACTTTGAAAAAATGTTGCAAATTTTATAAGATAATTTGGTTTAAAATATTGTTAAAAAAGACAATCAATAATTATAAAACATATGGTTAAGGTACACAAAATTGATAGGATTTTAAAGAAACGTGACATTGAAGCTAGATTTTTGTTCAAATTTATAAATTTTGGCAAAATTATTCCATTATTAATTTGTGAACTAAAATTTATGTAAAAACTTGATATTATTGAAAGAAAAATACTCGTGCAGTTCATATTACAATCATCTTTGTACATCTCACCAAAACACTCAGGTGCACTTCACACTACACTCATCTTTGTGCATCTCACCAAATTGTTCAATCATAATTTGCCACCCGACAAATTCTTCTTACATCTTTCTTTAAATATATATTTTTCTGTGTGTGTGATCAGAATGAGAATAAGATGCACCCAAGTATTGCTCTTATTGAAATTAGTGAGTTTATGAAGATTTATAAAATTAATTGATGAATTAGCTAAACATAAGAATGAGACATAAATTGCTACCTTTATCTAAGCTTAAAGTACAATTTCTAGAGAAGAAAACAAATCCAATCATGTTATTGCAACTTTGACTCTCTCGAATAGTTGCTTTTTTGATATGAAAAGAAGTCTTTTCCAATAGCATCCTCCCCCAAGAGATTGACGAGGGAGTTGGGTATGGTTGCTTTGCTTCTTTGTTCGCTTTAAAAAATGGTACAATCTAATAAAATTAAGAGGTTAGGGGTGAAAAAATTAGCTCAACTACAAGTTTATAGATAAAAATGATTTCTTTTTTCACAACATATAAACTTTGAGTCAAATAAAGAGTAAACATATAAACTTTTTGAGTCAAATAAAAAAAGAGTTATGTACAATGCAGGTGGCTCTGACTGTGAACACAGCAGCAGCAGGGGCAGCAGCAGCAGTGGTATCTCTAGCACACAGTGGGAACTCGAGCACAAACTGGTTGTCAATATGCAACCAATTTGGTGACTTTTGCCAACAAGCCAGTGGGGCTGTCATTGGCTCTTTTGCTGCTGTCTTGTTCTTCCTTTTACTCATCTTGTTCTCTGCTTTGTCTCTAAAAAATACCCATTGA

mRNA sequence

ATGAAGACCGGCGAATCGACCGCCATTGACGTTGCCCCTGAGACCAACAACAGCGGCCCAATTGGGAAGAAGAAGAGCACGACGCCGTTGCTGGCGGCGCCGGTGCCAGTGCCAGACAGGGGAACCCACCGGATGAAACGTGGGCTTGCGATTTTCGACTTCGTTTTGAGAATCGGCGCACTTGCGTCGGCGGTAGCCGCCGCCGCCGCCATGGGAACCAGTGGCCAAACGTTGCCGTTTTTCACTCAGTTCTTCCAGTTCGAGGCTAGCTACGACGATTTGCCCACTTTCCAGTTTTTTGTGGTGGCAATGGGAATAGTTGCGGGATATGTGGTTTTGTCGATTCCATTCTCAATTGTTTGTATTGTTCGTCCCCATGCTGCTGGACCTCGCGTTCTCTTGTTGATTTTAGATGCAGTGGCTCTGACTGTGAACACAGCAGCAGCAGGGGCAGCAGCAGCAGTGGTATCTCTAGCACACAGTGGGAACTCGAGCACAAACTGGTTGTCAATATGCAACCAATTTGGTGACTTTTGCCAACAAGCCAGTGGGGCTGTCATTGGCTCTTTTGCTGCTGTCTTGTTCTTCCTTTTACTCATCTTGTTCTCTGCTTTGTCTCTAAAAAATACCCATTGA

Coding sequence (CDS)

ATGAAGACCGGCGAATCGACCGCCATTGACGTTGCCCCTGAGACCAACAACAGCGGCCCAATTGGGAAGAAGAAGAGCACGACGCCGTTGCTGGCGGCGCCGGTGCCAGTGCCAGACAGGGGAACCCACCGGATGAAACGTGGGCTTGCGATTTTCGACTTCGTTTTGAGAATCGGCGCACTTGCGTCGGCGGTAGCCGCCGCCGCCGCCATGGGAACCAGTGGCCAAACGTTGCCGTTTTTCACTCAGTTCTTCCAGTTCGAGGCTAGCTACGACGATTTGCCCACTTTCCAGTTTTTTGTGGTGGCAATGGGAATAGTTGCGGGATATGTGGTTTTGTCGATTCCATTCTCAATTGTTTGTATTGTTCGTCCCCATGCTGCTGGACCTCGCGTTCTCTTGTTGATTTTAGATGCAGTGGCTCTGACTGTGAACACAGCAGCAGCAGGGGCAGCAGCAGCAGTGGTATCTCTAGCACACAGTGGGAACTCGAGCACAAACTGGTTGTCAATATGCAACCAATTTGGTGACTTTTGCCAACAAGCCAGTGGGGCTGTCATTGGCTCTTTTGCTGCTGTCTTGTTCTTCCTTTTACTCATCTTGTTCTCTGCTTTGTCTCTAAAAAATACCCATTGA

Protein sequence

MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGALASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIVCIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQQASGAVIGSFAAVLFFLLLILFSALSLKNTH

Homology

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BLAST of Lsi01G012060 vs. ExPASy Swiss-Prot
Match: P0DI61 (Casparian strip membrane protein 1 OS=Cucumis melo OX=3656 PE=2 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 1.8e-100
Identity = 196/211 (92.89%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGA 60
           MKTGESTAID+APETNNSGPIGKKKSTTPLLAA  PVPDRGTHRMKRGLAIFDFVLRIG 
Sbjct: 1   MKTGESTAIDIAPETNNSGPIGKKKSTTPLLAA--PVPDRGTHRMKRGLAIFDFVLRIGV 60

Query: 61  LASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV 120
           LASA+AAAAAMGTS QTLPFFTQFFQFEASYDDLPTFQFFVVAM +VAGYVVLSIPFSIV
Sbjct: 61  LASALAAAAAMGTSEQTLPFFTQFFQFEASYDDLPTFQFFVVAMAVVAGYVVLSIPFSIV 120

Query: 121 CIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ 180
           CI+RPHAAGPRVLLLILD+VALT+NTAAAGAAAAVVSLAHSGNSSTNWL+ICNQFGDFCQ
Sbjct: 121 CIIRPHAAGPRVLLLILDSVALTLNTAAAGAAAAVVSLAHSGNSSTNWLAICNQFGDFCQ 180

Query: 181 QASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QASGAV+GSFAAVL FLLLILFSALSLKN+H
Sbjct: 181 QASGAVVGSFAAVLLFLLLILFSALSLKNSH 209

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BLAST of Lsi01G012060 vs. ExPASy Swiss-Prot
Match: B9IIR5 (Casparian strip membrane protein 2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_576556 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 5.0e-63
Identity = 133/203 (65.52%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 6   STAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGALASAV 65
           ST ID+ PE+++       K T PL+AA  P+ ++G +  K+G+AIFDF+LR+ A+A+A+
Sbjct: 5   STEIDM-PESSS-----VSKGTAPLIAA--PMKEKGGY--KKGIAIFDFILRLAAIATAL 64

Query: 66  AAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIVCIVRP 125
           AAAA+MGTS +TLPFFTQFFQF+ASYDDLPTFQFFV+AM IVAGY+VLS+PFSIV IVRP
Sbjct: 65  AAAASMGTSDETLPFFTQFFQFQASYDDLPTFQFFVIAMAIVAGYLVLSLPFSIVAIVRP 124

Query: 126 HAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQQASGA 185
           HAAGPR+LL+ILD VALT+NTAA  AAAA+V LAH+GNSSTNWL+IC QFGDFCQ+ SGA
Sbjct: 125 HAAGPRLLLIILDTVALTLNTAAGAAAAAIVYLAHNGNSSTNWLAICQQFGDFCQKNSGA 184

Query: 186 VIGSFAAVLFFLLLILFSALSLK 209
           V+ SF  V+ F+ L++ SA +L+
Sbjct: 185 VVASFITVVIFVFLLVLSAFALR 197

[Close]

BLAST of Lsi01G012060 vs. ExPASy Swiss-Prot
Match: B9HBX2 (Casparian strip membrane protein 1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_763057 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.0e-60
Identity = 130/204 (63.73%), Postives = 166/204 (81.37%), Query Frame = 0


Query: 5   ESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGALASA 64
           ES AID+ PE+++       K   PL+A  V   ++G +R  +G+AIFDF+LR+ A+A+A
Sbjct: 4   ESAAIDI-PESSSVA-----KGKAPLIA--VSRNEKGGYR--KGIAIFDFILRLAAIATA 63

Query: 65  VAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIVCIVR 124
           +AAAAAMGTS +TLPFFTQFFQF+ASYDDLPTFQFFV+A+ IV GY+VLS+PFSIV IVR
Sbjct: 64  LAAAAAMGTSDETLPFFTQFFQFQASYDDLPTFQFFVIAIAIVGGYLVLSLPFSIVAIVR 123

Query: 125 PHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQQASG 184
           PHA GPR+LL+ILDAVALT+NTAA  AAAA+V LAH+GNS+TNWL+IC Q+GDFCQ+ SG
Sbjct: 124 PHAVGPRLLLIILDAVALTLNTAAGAAAAAIVYLAHNGNSNTNWLAICQQYGDFCQKVSG 183

Query: 185 AVIGSFAAVLFFLLLILFSALSLK 209
           AV+ SF  V+ F+ LI+ SA +L+
Sbjct: 184 AVVASFITVVIFVFLIVLSAFALR 197

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BLAST of Lsi01G012060 vs. ExPASy Swiss-Prot
Match: B9IIR4 (Casparian strip membrane protein 3 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_907513 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-59
Identity = 129/203 (63.55%), Postives = 159/203 (78.33%), Query Frame = 0


Query: 6   STAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGALASAV 65
           S  +D+  +T+ +      K T PL+AA   V  +G +  K+GLAIFD VLR+GA+ +A+
Sbjct: 2   SARVDIPADTSAAA-----KGTAPLIAASTHV--KGGY--KKGLAIFDLVLRLGAVVTAL 61

Query: 66  AAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIVCIVRP 125
           AAAA MGT+ QTLPFFTQFFQF+ASYDDLPTFQFFV+AM IV+GY+VLS+PFSIV I+RP
Sbjct: 62  AAAATMGTTDQTLPFFTQFFQFQASYDDLPTFQFFVIAMAIVSGYLVLSLPFSIVAIIRP 121

Query: 126 HAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQQASGA 185
           HA GPR+LL+ILD VALT+NTAAA AA A+V LA +GNSS NWL IC QFGDFCQ+ASGA
Sbjct: 122 HATGPRLLLIILDTVALTLNTAAAAAAVAIVDLAQNGNSSANWLGICQQFGDFCQKASGA 181

Query: 186 VIGSFAAVLFFLLLILFSALSLK 209
           V+ SF A    L LI+ SAL+L+
Sbjct: 182 VVASFIAAGVLLFLIVISALALR 195

[Close]

BLAST of Lsi01G012060 vs. ExPASy Swiss-Prot
Match: B9SX12 (Casparian strip membrane protein 1 OS=Ricinus communis OX=3988 GN=RCOM_1259250 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.9e-58
Identity = 124/203 (61.08%), Postives = 158/203 (77.83%), Query Frame = 0


Query: 6   STAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGALASAV 65
           ST I++  E   S  + K K+  PL+ A     ++     K+G+AIFDF+LR+GA+ SA+
Sbjct: 2   STTIEIPAE---SSAVAKGKA--PLIGASSSSYEK-KGGYKKGIAIFDFILRLGAVISAL 61

Query: 66  AAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIVCIVRP 125
           +AAA MGTS +TLPFFTQFFQFEA YDD PTFQFFV+AMG V GY+VLS+PFS+V I+RP
Sbjct: 62  SAAATMGTSDETLPFFTQFFQFEAGYDDFPTFQFFVIAMGFVGGYLVLSLPFSVVAIIRP 121

Query: 126 HAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQQASGA 185
           HA G R+LLLILD VALT+NTAAA AAAA+V LAH+GN S NWL++C QFGDFCQ+ SG 
Sbjct: 122 HAVGIRLLLLILDTVALTLNTAAAAAAAAIVYLAHNGNQSANWLAVCQQFGDFCQKVSGG 181

Query: 186 VIGSFAAVLFFLLLILFSALSLK 209
           V+ SF +VL FLLL++ SA++L+
Sbjct: 182 VVASFVSVLVFLLLVVMSAVALR 198

[Close]

BLAST of Lsi01G012060 vs. ExPASy TrEMBL
Match: A0A0A0KKJ8 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G453800 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 193/211 (91.47%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGA 60
           MKTGEST+ID+APETNNSGPIGKKKSTTPLLAAPVPV DRGTHRMKRGL+IFDFVLRIG 
Sbjct: 1   MKTGESTSIDIAPETNNSGPIGKKKSTTPLLAAPVPVTDRGTHRMKRGLSIFDFVLRIGV 60

Query: 61  LASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV 120
           LASA+AAAA MGTS QTLPFFTQFFQFEASYDDLPTFQFFVVAM +VAGYVVLSIPFSIV
Sbjct: 61  LASALAAAATMGTSDQTLPFFTQFFQFEASYDDLPTFQFFVVAMAVVAGYVVLSIPFSIV 120

Query: 121 CIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ 180
           CI+RPHAAGPRVLLLILD+VALT+NTAAAGAAAAVVSLAHSGNSSTNWL++CNQFGDFCQ
Sbjct: 121 CIIRPHAAGPRVLLLILDSVALTLNTAAAGAAAAVVSLAHSGNSSTNWLAVCNQFGDFCQ 180

Query: 181 QASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QASGAV+GSFAAVL FLLLILFSALSLKN+H
Sbjct: 181 QASGAVVGSFAAVLLFLLLILFSALSLKNSH 211

[Close]

BLAST of Lsi01G012060 vs. ExPASy TrEMBL
Match: A0A5A7SKE2 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00860 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.5e-98
Identity = 196/211 (92.89%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGA 60
           MKTGESTAID+APETNNSGPIGKKKSTTPLLAA  PVPDRGTHRMKRGLAIFDFVLRIG 
Sbjct: 1   MKTGESTAIDIAPETNNSGPIGKKKSTTPLLAA--PVPDRGTHRMKRGLAIFDFVLRIGV 60

Query: 61  LASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV 120
           LASA+AAAAAMGTS QTLPFFTQFFQFEASYDDLPTFQFFVVAM +VAGYVVLSIPFSIV
Sbjct: 61  LASALAAAAAMGTSEQTLPFFTQFFQFEASYDDLPTFQFFVVAMAVVAGYVVLSIPFSIV 120

Query: 121 CIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ 180
           CI+RPHAAGPRVLLLILD+VALT+NTAAAGAAAAVVSLAHSGNSSTNWL+ICNQFGDFCQ
Sbjct: 121 CIIRPHAAGPRVLLLILDSVALTLNTAAAGAAAAVVSLAHSGNSSTNWLAICNQFGDFCQ 180

Query: 181 QASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QASGAV+GSFAAVL FLLLILFSALSLKN+H
Sbjct: 181 QASGAVVGSFAAVLLFLLLILFSALSLKNSH 209

[Close]

BLAST of Lsi01G012060 vs. ExPASy TrEMBL
Match: A0A1S3CHB9 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500916 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.5e-98
Identity = 196/211 (92.89%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGA 60
           MKTGESTAID+APETNNSGPIGKKKSTTPLLAA  PVPDRGTHRMKRGLAIFDFVLRIG 
Sbjct: 1   MKTGESTAIDIAPETNNSGPIGKKKSTTPLLAA--PVPDRGTHRMKRGLAIFDFVLRIGV 60

Query: 61  LASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV 120
           LASA+AAAAAMGTS QTLPFFTQFFQFEASYDDLPTFQFFVVAM +VAGYVVLSIPFSIV
Sbjct: 61  LASALAAAAAMGTSEQTLPFFTQFFQFEASYDDLPTFQFFVVAMAVVAGYVVLSIPFSIV 120

Query: 121 CIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ 180
           CI+RPHAAGPRVLLLILD+VALT+NTAAAGAAAAVVSLAHSGNSSTNWL+ICNQFGDFCQ
Sbjct: 121 CIIRPHAAGPRVLLLILDSVALTLNTAAAGAAAAVVSLAHSGNSSTNWLAICNQFGDFCQ 180

Query: 181 QASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QASGAV+GSFAAVL FLLLILFSALSLKN+H
Sbjct: 181 QASGAVVGSFAAVLLFLLLILFSALSLKNSH 209

[Close]

BLAST of Lsi01G012060 vs. ExPASy TrEMBL
Match: A0A6J1IL91 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111478054 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92
Identity = 185/212 (87.26%), Postives = 200/212 (94.34%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPV-PDRGTHRMKRGLAIFDFVLRIG 60
           MK  ES+AI+VA ET NSGPIGKKKSTTPLLAA VP+ PDRGTHRMKRGLAIFD VLRIG
Sbjct: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSI 120
           AL+SA+AAAA MGTSGQTLPFFTQFFQFEASYDDLPTFQFFV+ MGIVAGYVVLSIPFSI
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSIPFSI 120

Query: 121 VCIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFC 180
           VCI+RPHAAGPR+LLLILD+VAL ++TAAAGAAAAVV+LAHSGNSSTNWL++CNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QQASGAV+GSFAAVL FLLLILFSALSLKN H
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 212

[Close]

BLAST of Lsi01G012060 vs. ExPASy TrEMBL
Match: A0A6J1BV79 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111005840 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.1e-92
Identity = 189/209 (90.43%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 2   KTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPV-PDRGTHRMKRGLAIFDFVLRIGA 61
           K  ESTAIDVAPE  NSGPIGKKKSTTPLLAAPVPV  DRGTHRMKRGLAIFDFVLRIGA
Sbjct: 3   KNSESTAIDVAPENPNSGPIGKKKSTTPLLAAPVPVRQDRGTHRMKRGLAIFDFVLRIGA 62

Query: 62  LASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV 121
           LA+A+AAAAAMGTS +TLPFFTQFFQFEASYDDLPTFQFFV+AMGIVAGYVVLSIPFSIV
Sbjct: 63  LAAALAAAAAMGTSDETLPFFTQFFQFEASYDDLPTFQFFVIAMGIVAGYVVLSIPFSIV 122

Query: 122 CIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ 181
           CIVRPHA GPR+LLLILD+VALT+ T AAGAAAAVVSLAHSGNSSTNWL+ICNQFGDFCQ
Sbjct: 123 CIVRPHAVGPRLLLLILDSVALTLTTVAAGAAAAVVSLAHSGNSSTNWLAICNQFGDFCQ 182

Query: 182 QASGAVIGSFAAVLFFLLLILFSALSLKN 210
           QASGAVIGSFAAVL FLLLILFSALSLK+
Sbjct: 183 QASGAVIGSFAAVLLFLLLILFSALSLKH 211

[Close]

BLAST of Lsi01G012060 vs. NCBI nr
Match: XP_038883194.1 (casparian strip membrane protein 1 [Benincasa hispida])

HSP 1 Score: 378.6 bits (971), Expect = 3.4e-101
Identity = 201/211 (95.26%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGA 60
           M+ GESTAIDVAPETNNSGPIGKKKSTTPLLA PVPVPDRGTHRMKRGLAIFDFVLRIGA
Sbjct: 1   MRNGESTAIDVAPETNNSGPIGKKKSTTPLLATPVPVPDRGTHRMKRGLAIFDFVLRIGA 60

Query: 61  LASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV 120
           LASA+AAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV
Sbjct: 61  LASALAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV 120

Query: 121 CIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ 180
           CIVRPHAAGPR+LLLILDAVALT+NTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ
Sbjct: 121 CIVRPHAAGPRLLLLILDAVALTLNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ 180

Query: 181 QASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QASGAV+GSFAAVL FLLLILFSALSLK++H
Sbjct: 181 QASGAVVGSFAAVLLFLLLILFSALSLKSSH 211

[Close]

BLAST of Lsi01G012060 vs. NCBI nr
Match: XP_004143331.1 (casparian strip membrane protein 1 [Cucumis sativus] >KGN48281.1 hypothetical protein Csa_003708 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 2.7e-98
Identity = 193/211 (91.47%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGA 60
           MKTGEST+ID+APETNNSGPIGKKKSTTPLLAAPVPV DRGTHRMKRGL+IFDFVLRIG 
Sbjct: 1   MKTGESTSIDIAPETNNSGPIGKKKSTTPLLAAPVPVTDRGTHRMKRGLSIFDFVLRIGV 60

Query: 61  LASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV 120
           LASA+AAAA MGTS QTLPFFTQFFQFEASYDDLPTFQFFVVAM +VAGYVVLSIPFSIV
Sbjct: 61  LASALAAAATMGTSDQTLPFFTQFFQFEASYDDLPTFQFFVVAMAVVAGYVVLSIPFSIV 120

Query: 121 CIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ 180
           CI+RPHAAGPRVLLLILD+VALT+NTAAAGAAAAVVSLAHSGNSSTNWL++CNQFGDFCQ
Sbjct: 121 CIIRPHAAGPRVLLLILDSVALTLNTAAAGAAAAVVSLAHSGNSSTNWLAVCNQFGDFCQ 180

Query: 181 QASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QASGAV+GSFAAVL FLLLILFSALSLKN+H
Sbjct: 181 QASGAVVGSFAAVLLFLLLILFSALSLKNSH 211

[Close]

BLAST of Lsi01G012060 vs. NCBI nr
Match: XP_008462597.1 (PREDICTED: casparian strip membrane protein 1 [Cucumis melo] >P0DI61.1 RecName: Full=Casparian strip membrane protein 1; Short=CmCASP1 [Cucumis melo] >KAA0025237.1 casparian strip membrane protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97
Identity = 196/211 (92.89%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGA 60
           MKTGESTAID+APETNNSGPIGKKKSTTPLLAA  PVPDRGTHRMKRGLAIFDFVLRIG 
Sbjct: 1   MKTGESTAIDIAPETNNSGPIGKKKSTTPLLAA--PVPDRGTHRMKRGLAIFDFVLRIGV 60

Query: 61  LASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIV 120
           LASA+AAAAAMGTS QTLPFFTQFFQFEASYDDLPTFQFFVVAM +VAGYVVLSIPFSIV
Sbjct: 61  LASALAAAAAMGTSEQTLPFFTQFFQFEASYDDLPTFQFFVVAMAVVAGYVVLSIPFSIV 120

Query: 121 CIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQ 180
           CI+RPHAAGPRVLLLILD+VALT+NTAAAGAAAAVVSLAHSGNSSTNWL+ICNQFGDFCQ
Sbjct: 121 CIIRPHAAGPRVLLLILDSVALTLNTAAAGAAAAVVSLAHSGNSSTNWLAICNQFGDFCQ 180

Query: 181 QASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QASGAV+GSFAAVL FLLLILFSALSLKN+H
Sbjct: 181 QASGAVVGSFAAVLLFLLLILFSALSLKNSH 209

[Close]

BLAST of Lsi01G012060 vs. NCBI nr
Match: XP_022977901.1 (casparian strip membrane protein 1 [Cucurbita maxima])

HSP 1 Score: 348.6 bits (893), Expect = 3.8e-92
Identity = 185/212 (87.26%), Postives = 200/212 (94.34%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPV-PDRGTHRMKRGLAIFDFVLRIG 60
           MK  ES+AI+VA ET NSGPIGKKKSTTPLLAA VP+ PDRGTHRMKRGLAIFD VLRIG
Sbjct: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSI 120
           AL+SA+AAAA MGTSGQTLPFFTQFFQFEASYDDLPTFQFFV+ MGIVAGYVVLSIPFSI
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSIPFSI 120

Query: 121 VCIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFC 180
           VCI+RPHAAGPR+LLLILD+VAL ++TAAAGAAAAVV+LAHSGNSSTNWL++CNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QQASGAV+GSFAAVL FLLLILFSALSLKN H
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 212

[Close]

BLAST of Lsi01G012060 vs. NCBI nr
Match: XP_023544952.1 (casparian strip membrane protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.8 bits (891), Expect = 6.5e-92
Identity = 184/212 (86.79%), Postives = 200/212 (94.34%), Query Frame = 0


Query: 1   MKTGESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPV-PDRGTHRMKRGLAIFDFVLRIG 60
           MK  ES+AI+VA ET NSGPIGKKKSTTPLLAA VP+ PDRGTHRMKRGLAIFD VLRIG
Sbjct: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSI 120
           AL+SA+AAAA MGTSGQTLPFFTQFFQFEASYDDLPTFQFFV+ MGIVAGYVVLS+PFSI
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSLPFSI 120

Query: 121 VCIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFC 180
           VCI+RPHAAGPR+LLLILD+VAL ++TAAAGAAAAVV+LAHSGNSSTNWL++CNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
           QQASGAV+GSFAAVL FLLLILFSALSLKN H
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 212

[Close]

BLAST of Lsi01G012060 vs. TAIR 10
Match: AT5G06200.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 218.8 bits (556), Expect = 4.2e-57
Identity = 122/204 (59.80%), Postives = 156/204 (76.47%), Query Frame = 0


Query: 5   ESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGALASA 64
           +S A+DV  E+++       K   PLL   +     G+   KRGL+IFDF+LR+ A+ +A
Sbjct: 4   DSIAVDVPAESSS-----VIKGKAPLLG--LARDHTGSGGYKRGLSIFDFLLRLAAIVAA 63

Query: 65  VAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIVCIVR 124
           +AAAA MGTS +TLPFFTQF QFEASYDDLPTFQFFVVA+ IVAGY+VLS+PFS+V IVR
Sbjct: 64  LAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVVAIAIVAGYLVLSLPFSVVTIVR 123

Query: 125 PHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQQASG 184
           P A  PR+LLL+LD  AL ++TAAA AAAA+V LAH+GN++TNWL IC QFGDFCQ+ SG
Sbjct: 124 PLAVAPRLLLLVLDTAALALDTAAASAAAAIVYLAHNGNTNTNWLPICQQFGDFCQKTSG 183

Query: 185 AVIGSFAAVLFFLLLILFSALSLK 209
           AV+ +FA+V F  +L++ S +SLK
Sbjct: 184 AVVSAFASVTFLAILVVISGVSLK 200

[Close]

BLAST of Lsi01G012060 vs. TAIR 10
Match: AT3G11550.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 216.1 bits (549), Expect = 2.7e-56
Identity = 117/204 (57.35%), Postives = 152/204 (74.51%), Query Frame = 0


Query: 5   ESTAIDVAPETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGALASA 64
           EST IDV  E++++      K   PL+         G+    RGLAIFDF+LR+ A+ +A
Sbjct: 4   ESTFIDVPAESSSA-----MKGKAPLIGVARDHTTSGSGGYNRGLAIFDFLLRLAAIVAA 63

Query: 65  VAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIVCIVR 124
           +AAAA MGTS +TLPFFTQF QFEASYDDLPTFQFFV+AM +V GY+VLS+P S+V I+R
Sbjct: 64  LAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVIAMALVGGYLVLSLPISVVTILR 123

Query: 125 PHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQQASG 184
           P A  PR+LLL+LD   L +NTAAA +AAA+  LAHSGN +TNWL IC QFGDFCQ++SG
Sbjct: 124 PLATAPRLLLLVLDTGVLALNTAAASSAAAISYLAHSGNQNTNWLPICQQFGDFCQKSSG 183

Query: 185 AVIGSFAAVLFFLLLILFSALSLK 209
           AV+ +F +V+FF +L++ S ++LK
Sbjct: 184 AVVSAFVSVVFFTILVVISGVALK 202

[Close]

BLAST of Lsi01G012060 vs. TAIR 10
Match: AT2G36100.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-51
Identity = 114/207 (55.07%), Postives = 148/207 (71.50%), Query Frame = 0


Query: 5   ESTAIDV---APETNNSGPIGKKKSTTPLLAAPVPVPDRGTHRMKRGLAIFDFVLRIGAL 64
           EST IDV   +  T +S  + K       +A    V  RG    KRGLAIFDF+LR+ A+
Sbjct: 4   ESTTIDVGEPSTVTKSSSHVVKDAKKKGFVA----VASRG--GAKRGLAIFDFLLRLAAI 63

Query: 65  ASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMGIVAGYVVLSIPFSIVC 124
           A  + AA+ M T+ +TLPFFTQF QF+A YDDLP FQ+FV+A+ +VA Y+VLS+PFSIV 
Sbjct: 64  AVTIGAASVMYTAEETLPFFTQFLQFQAGYDDLPAFQYFVIAVAVVASYLVLSLPFSIVS 123

Query: 125 IVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSSTNWLSICNQFGDFCQQ 184
           IVRPHA  PR++LLI D + +T+NT+AA AAA++  LAH+GN STNWL IC QFGDFCQ 
Sbjct: 124 IVRPHAVAPRLILLICDTLVVTLNTSAAAAAASITYLAHNGNQSTNWLPICQQFGDFCQN 183

Query: 185 ASGAVIGSFAAVLFFLLLILFSALSLK 209
            S AV+    A+LFF++LI+ SA++LK
Sbjct: 184 VSTAVVADSIAILFFIVLIIISAIALK 204

[Close]

BLAST of Lsi01G012060 vs. TAIR 10
Match: AT2G27370.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-45
Identity = 95/165 (57.58%), Postives = 121/165 (73.33%), Query Frame = 0


Query: 46  KRGLAIFDFVLRIGALASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAMG 105
           KRG+AIFDFVLR+ A  +A+AAAA M T+ +TLPFFTQF QF+A Y DLPT   FV+   
Sbjct: 56  KRGVAIFDFVLRLIAAITAMAAAAKMATTEETLPFFTQFLQFQADYTDLPTMSSFVIVNS 115

Query: 106 IVAGYVVLSIPFSIVCIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNSS 165
           IV GY+ LS+PFSIVCI+RP A  PR+ L++ D V + +   AA A+AA+V LAH+GNSS
Sbjct: 116 IVGGYLTLSLPFSIVCILRPLAVPPRLFLILCDTVMMGLTLMAASASAAIVYLAHNGNSS 175

Query: 166 TNWLSICNQFGDFCQQASGAVIGSFAAVLFFLLLILFSALSLKNT 211
           +NWL +C QFGDFCQ  SGAV+ SF A    + L++ SA +LK T
Sbjct: 176 SNWLPVCQQFGDFCQGTSGAVVASFIAATLLMFLVILSAFALKRT 220

[Close]

BLAST of Lsi01G012060 vs. TAIR 10
Match: AT5G15290.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-38
Identity = 82/167 (49.10%), Postives = 118/167 (70.66%), Query Frame = 0


Query: 45  MKRGLAIFDFVLRIGALASAVAAAAAMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVVAM 104
           M R +AI +F+LRI A  + + +A  MGT+ +TLPFFTQF +F+A Y+DLP   FFVVA 
Sbjct: 21  MSRRIAILEFILRIVAFFNTIGSAILMGTTHETLPFFTQFIRFQAEYNDLPALTFFVVAN 80

Query: 105 GIVAGYVVLSIPFSIVCIVRPHAAGPRVLLLILDAVALTVNTAAAGAAAAVVSLAHSGNS 164
            +V+GY++LS+  + V IV+      R+LL+ILD   L + T+ A +AAA+V LAH+GN+
Sbjct: 81  AVVSGYLILSLTLAFVHIVKRKTQNTRILLIILDVAMLGLLTSGASSAAAIVYLAHNGNN 140

Query: 165 STNWLSICNQFGDFCQQASGAVIGSFAAVLFFLLLILFSALSLKNTH 212
            TNW +IC QF  FC++ SG++IGSF A++  +LLIL SA++L   H
Sbjct: 141 KTNWFAICQQFNSFCERISGSLIGSFIAIVLLILLILLSAIALSRRH 187

The following BLAST results are available for this feature:

BLAST of Lsi01G012060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DI61	1.8e-100	92.89	Casparian strip membrane protein 1 OS=Cucumis melo OX=3656 PE=2 SV=1	[more]
B9IIR5	5.0e-63	65.52	Casparian strip membrane protein 2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_...	[more]
B9HBX2	1.0e-60	63.73	Casparian strip membrane protein 1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_...	[more]
B9IIR4	1.2e-59	63.55	Casparian strip membrane protein 3 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_...	[more]
B9SX12	2.9e-58	61.08	Casparian strip membrane protein 1 OS=Ricinus communis OX=3988 GN=RCOM_1259250 P...	[more]

BLAST of Lsi01G012060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKJ8	1.3e-98	91.47	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G453800 PE=3 SV=1	[more]
A0A5A7SKE2	6.5e-98	92.89	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00...	[more]
A0A1S3CHB9	6.5e-98	92.89	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500916 PE=3 SV=1	[more]
A0A6J1IL91	1.8e-92	87.26	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111478054 PE=3 SV=1	[more]
A0A6J1BV79	4.1e-92	90.43	CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111005840 PE=3 SV=1	[more]

BLAST of Lsi01G012060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883194.1	3.4e-101	95.26	casparian strip membrane protein 1 [Benincasa hispida]	[more]
XP_004143331.1	2.7e-98	91.47	casparian strip membrane protein 1 [Cucumis sativus] >KGN48281.1 hypothetical pr...	[more]
XP_008462597.1	1.3e-97	92.89	PREDICTED: casparian strip membrane protein 1 [Cucumis melo] >P0DI61.1 RecName: ...	[more]
XP_022977901.1	3.8e-92	87.26	casparian strip membrane protein 1 [Cucurbita maxima]	[more]
XP_023544952.1	6.5e-92	86.79	casparian strip membrane protein 1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G012060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06200.1	4.2e-57	59.80	Uncharacterised protein family (UPF0497)	[more]
AT3G11550.1	2.7e-56	57.35	Uncharacterised protein family (UPF0497)	[more]
AT2G36100.1	1.2e-51	55.07	Uncharacterised protein family (UPF0497)	[more]
AT2G27370.1	2.8e-45	57.58	Uncharacterised protein family (UPF0497)	[more]
AT5G15290.1	1.5e-38	49.10	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 47..195 e-value: 6.7E-45 score: 152.5
IPR006459	Casparian strip membrane protein	TIGRFAM	TIGR01569	TIGR01569	coord: 54..206 e-value: 9.3E-40 score: 133.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 19..209
None	No IPR available	PANTHER	PTHR11615:SF281	CASPARIAN STRIP MEMBRANE PROTEIN 3	coord: 19..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G012060.1	Lsi01G012060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007043	cell-cell junction assembly
biological_process	GO:0042545	cell wall modification
cellular_component	GO:0048226	Casparian strip
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding