Lsi01G011960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G011960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein GL2-INTERACTING REPRESSOR 1
Location	chr01: 10204155 .. 10204493 (-)
RNA-Seq Expression	Lsi01G011960
Synteny	Lsi01G011960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGAAGAAACAGTGGAGCAGCAACACCAAAGCTTGAGCTGAAACTGAACTTATCGCCGCCGAGAGCGAACAGAGGAGTGGAATCACCGAGTCGGTCTGCTACGGTCTCGCCGACATCGCCGCCGAGCTCGTGTGTGTCGTCGGAGGAAGAGATGGCGGCGGCGGCGAGATACTCAAACAGCCCTGAAGCAACGTCGATGATGCTGGTGGGATGTCCACGTTGTCTGATGTATGTTATGTTGTCGGAAGAAGATCCGAAATGTCCGAAATGCAAAAGCACTGTTCTTCTCGATGTTCTCCATGATAACGCTGCCGTCAAAACCAGAAAAAACTAG

mRNA sequence

ATGAATCGAAGAAACAGTGGAGCAGCAACACCAAAGCTTGAGCTGAAACTGAACTTATCGCCGCCGAGAGCGAACAGAGGAGTGGAATCACCGAGTCGGTCTGCTACGGTCTCGCCGACATCGCCGCCGAGCTCGTGTGTGTCGTCGGAGGAAGAGATGGCGGCGGCGGCGAGATACTCAAACAGCCCTGAAGCAACGTCGATGATGCTGGTGGGATGTCCACGTTGTCTGATGTATGTTATGTTGTCGGAAGAAGATCCGAAATGTCCGAAATGCAAAAGCACTGTTCTTCTCGATGTTCTCCATGATAACGCTGCCGTCAAAACCAGAAAAAACTAG

Coding sequence (CDS)

ATGAATCGAAGAAACAGTGGAGCAGCAACACCAAAGCTTGAGCTGAAACTGAACTTATCGCCGCCGAGAGCGAACAGAGGAGTGGAATCACCGAGTCGGTCTGCTACGGTCTCGCCGACATCGCCGCCGAGCTCGTGTGTGTCGTCGGAGGAAGAGATGGCGGCGGCGGCGAGATACTCAAACAGCCCTGAAGCAACGTCGATGATGCTGGTGGGATGTCCACGTTGTCTGATGTATGTTATGTTGTCGGAAGAAGATCCGAAATGTCCGAAATGCAAAAGCACTGTTCTTCTCGATGTTCTCCATGATAACGCTGCCGTCAAAACCAGAAAAAACTAG

Protein sequence

MNRRNSGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAARYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN

Homology

[Close]

BLAST of Lsi01G011960 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.8e-33
Identity = 76/99 (76.77%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 10  TPKLELKLNLSPPRAN--RGVESPSRSATVSPTSPPSSCVSSE-EEMAAAARYSNSPEAT 69
           +PKLELKLNLSPP ++  R V SPSRSAT SPTSPPSSCVSSE  +   + RYS SPE T
Sbjct: 5   SPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETT 64

Query: 70  SMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNA 106
           SM+LVGCPRCLMYVMLSE+DPKCPKCKSTVLLD LH+NA
Sbjct: 65  SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENA 103

[Close]

BLAST of Lsi01G011960 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 63/109 (57.80%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MNRRNSGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAARYS 60
           M+RRN     PKLEL+LNLSPP +     S  RS   S T+ PSSCVSSE          
Sbjct: 1   MSRRNKNG--PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSE------TNQE 60

Query: 61  NSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKT 110
            +   TSM+LVGCPRCLMYVMLS++DPKCPKCKSTVLLD L +NA   T
Sbjct: 61  ENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAAT 101

[Close]

BLAST of Lsi01G011960 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 13  LELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAARYSNSPEATSMMLVG 72
           L+LKLN+          SPS  +++   S  SS  S E E           EA SM++VG
Sbjct: 11  LDLKLNI----------SPSLDSSLLTESSSSSLCSEEAE-------GGGGEAKSMVVVG 70

Query: 73  CPRCLMYVMLS-EEDPKCPKCKSTVLLDVLHDNAAVKT 110
           CP C+MY++ S E DP+CP+C S VLLD L  N + K+
Sbjct: 71  CPNCIMYIITSLENDPRCPRCNSHVLLDFLTGNHSKKS 91

[Close]

BLAST of Lsi01G011960 vs. ExPASy TrEMBL
Match: A0A5A7SGG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00770 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.6e-48
Identity = 107/115 (93.04%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MNRRNS---GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAA 60
           MNRRNS   GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM    
Sbjct: 1   MNRRNSGGGGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM---- 60

Query: 61  RYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 113
           RYSNSPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN
Sbjct: 61  RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 111

[Close]

BLAST of Lsi01G011960 vs. ExPASy TrEMBL
Match: A0A0A0KHJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454370 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.6e-48
Identity = 107/115 (93.04%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MNRRNS---GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAA 60
           MNRRNS   GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM    
Sbjct: 1   MNRRNSGGGGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM---- 60

Query: 61  RYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 113
           RYSNSPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN
Sbjct: 61  RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 111

[Close]

BLAST of Lsi01G011960 vs. ExPASy TrEMBL
Match: A0A1S3CHA8 (uncharacterized protein LOC103500924 OS=Cucumis melo OX=3656 GN=LOC103500924 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 105/114 (92.11%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MNRRNS---GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAA 60
           MNRRNS   GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM    
Sbjct: 1   MNRRNSGGGGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM---- 60

Query: 61  RYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRK 112
           RYSNSPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKT K
Sbjct: 61  RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTEK 110

[Close]

BLAST of Lsi01G011960 vs. ExPASy TrEMBL
Match: A0A6J1EGT8 (uncharacterized protein LOC111433248 OS=Cucurbita moschata OX=3662 GN=LOC111433248 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.4e-46
Identity = 104/118 (88.14%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MNRRNSG-----AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAA 60
           MNRRNSG     AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM  
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60

Query: 61  A-ARYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 113
              RYS+SPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVKTR+N
Sbjct: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 118

[Close]

BLAST of Lsi01G011960 vs. ExPASy TrEMBL
Match: A0A6J1IMT5 (uncharacterized protein LOC111478822 OS=Cucurbita maxima OX=3661 GN=LOC111478822 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.9e-46
Identity = 103/118 (87.29%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 1   MNRRNSG-----AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAA 60
           MNRRNSG     AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM  
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60

Query: 61  A-ARYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 113
              RYS+SPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVK R+N
Sbjct: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKNRRN 118

[Close]

BLAST of Lsi01G011960 vs. NCBI nr
Match: XP_004143338.1 (uncharacterized protein LOC101217127 [Cucumis sativus] >KAA0025228.1 uncharacterized protein E6C27_scaffold541G00770 [Cucumis melo var. makuwa] >KGN48289.1 hypothetical protein Csa_003966 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 107/115 (93.04%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MNRRNS---GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAA 60
           MNRRNS   GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM    
Sbjct: 1   MNRRNSGGGGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM---- 60

Query: 61  RYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 113
           RYSNSPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN
Sbjct: 61  RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 111

[Close]

BLAST of Lsi01G011960 vs. NCBI nr
Match: XP_008462606.1 (PREDICTED: uncharacterized protein LOC103500924, partial [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 2.2e-46
Identity = 105/114 (92.11%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MNRRNS---GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAA 60
           MNRRNS   GAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM    
Sbjct: 1   MNRRNSGGGGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM---- 60

Query: 61  RYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRK 112
           RYSNSPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKT K
Sbjct: 61  RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTEK 110

[Close]

BLAST of Lsi01G011960 vs. NCBI nr
Match: XP_022925998.1 (uncharacterized protein LOC111433248 [Cucurbita moschata] >KAG6604328.1 Protein salt-induced and EIN3/EIL1-dependent 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034480.1 hypothetical protein SDJN02_04209, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.5 bits (493), Expect = 4.9e-46
Identity = 104/118 (88.14%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MNRRNSG-----AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAA 60
           MNRRNSG     AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM  
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60

Query: 61  A-ARYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 113
              RYS+SPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVKTR+N
Sbjct: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 118

[Close]

BLAST of Lsi01G011960 vs. NCBI nr
Match: XP_023543892.1 (uncharacterized protein LOC111803624 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 6.4e-46
Identity = 104/119 (87.39%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MNRRNSG------AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMA 60
           MNRRNSG      AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM 
Sbjct: 1   MNRRNSGGRGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMT 60

Query: 61  AA-ARYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 113
               RYS+SPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVKTR+N
Sbjct: 61  VGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119

[Close]

BLAST of Lsi01G011960 vs. NCBI nr
Match: XP_022979077.1 (uncharacterized protein LOC111478822 [Cucurbita maxima])

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45
Identity = 103/118 (87.29%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 1   MNRRNSG-----AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAA 60
           MNRRNSG     AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM  
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60

Query: 61  A-ARYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 113
              RYS+SPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVK R+N
Sbjct: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKNRRN 118

[Close]

BLAST of Lsi01G011960 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 142.1 bits (357), Expect = 2.7e-34
Identity = 76/99 (76.77%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 10  TPKLELKLNLSPPRAN--RGVESPSRSATVSPTSPPSSCVSSE-EEMAAAARYSNSPEAT 69
           +PKLELKLNLSPP ++  R V SPSRSAT SPTSPPSSCVSSE  +   + RYS SPE T
Sbjct: 5   SPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETT 64

Query: 70  SMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNA 106
           SM+LVGCPRCLMYVMLSE+DPKCPKCKSTVLLD LH+NA
Sbjct: 65  SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENA 103

[Close]

BLAST of Lsi01G011960 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.1 bits (266), Expect = 9.5e-24
Identity = 63/109 (57.80%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MNRRNSGAATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAARYS 60
           M+RRN     PKLEL+LNLSPP +     S  RS   S T+ PSSCVSSE          
Sbjct: 1   MSRRNKNG--PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSE------TNQE 60

Query: 61  NSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKT 110
            +   TSM+LVGCPRCLMYVMLS++DPKCPKCKSTVLLD L +NA   T
Sbjct: 61  ENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAAT 101

[Close]

BLAST of Lsi01G011960 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 13  LELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMAAAARYSNSPEATSMMLVG 72
           L+LKLN+          SPS  +++   S  SS  S E E           EA SM++VG
Sbjct: 11  LDLKLNI----------SPSLDSSLLTESSSSSLCSEEAE-------GGGGEAKSMVVVG 70

Query: 73  CPRCLMYVMLS-EEDPKCPKCKSTVLLDVLHDNAAVKT 110
           CP C+MY++ S E DP+CP+C S VLLD L  N + K+
Sbjct: 71  CPNCIMYIITSLENDPRCPRCNSHVLLDFLTGNHSKKS 91

[Close]

BLAST of Lsi01G011960 vs. TAIR 10
Match: AT3G52561.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-06
Identity = 26/68 (38.24%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 33 RSATVSPTSPPSSCVSSEEEM--AAAARYSNSPEATSMMLVGCPRCLMYVMLSEEDPKCP 92
          RS +   +S  +SC++  EE+    A+ + +  EA  M+++GC  C+MYVM+ +E  +CP
Sbjct: 30 RSPSSDTSSSQNSCLTRTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVMVLQERQRCP 89

Query: 93 KCKSTVLL 99
          KCK T L+
Sbjct: 90 KCKCTDLI 97

[Close]

BLAST of Lsi01G011960 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.2e-04
Identity = 17/37 (45.95%), Postives = 24/37 (64.86%), Query Frame = 0


Query: 65  ATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVL 102
           A S +  GCP CL YV +++ +PKCP+C S V L  +
Sbjct: 212 AASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPLPAM 248

The following BLAST results are available for this feature:

BLAST of Lsi01G011960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI1	3.8e-33	76.77	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9SRN4	1.3e-22	57.80	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]
Q9FMS4	3.2e-08	40.82	Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Lsi01G011960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SGG8	5.6e-48	93.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KHJ4	5.6e-48	93.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454370 PE=4 SV=1	[more]
A0A1S3CHA8	1.1e-46	92.11	uncharacterized protein LOC103500924 OS=Cucumis melo OX=3656 GN=LOC103500924 PE=...	[more]
A0A6J1EGT8	2.4e-46	88.14	uncharacterized protein LOC111433248 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A6J1IMT5	8.9e-46	87.29	uncharacterized protein LOC111478822 OS=Cucurbita maxima OX=3661 GN=LOC111478822...	[more]

BLAST of Lsi01G011960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143338.1	1.2e-47	93.04	uncharacterized protein LOC101217127 [Cucumis sativus] >KAA0025228.1 uncharacter...	[more]
XP_008462606.1	2.2e-46	92.11	PREDICTED: uncharacterized protein LOC103500924, partial [Cucumis melo]	[more]
XP_022925998.1	4.9e-46	88.14	uncharacterized protein LOC111433248 [Cucurbita moschata] >KAG6604328.1 Protein ...	[more]
XP_023543892.1	6.4e-46	87.39	uncharacterized protein LOC111803624 [Cucurbita pepo subsp. pepo]	[more]
XP_022979077.1	1.8e-45	87.29	uncharacterized protein LOC111478822 [Cucurbita maxima]	[more]

BLAST of Lsi01G011960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06270.1	2.7e-34	76.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G11600.1	9.5e-24	57.80	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G22270.1	2.3e-09	40.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G52561.1	3.1e-06	38.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G16500.1	2.2e-04	45.95	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	PANTHER	PTHR33177:SF40	SUBFAMILY NOT NAMED	coord: 1..112
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G011960.1	Lsi01G011960.1	mRNA