Lsi01G011780 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G011780
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	SAM domain-containing protein
Location	chr01: 10019779 .. 10021260 (-)
RNA-Seq Expression	Lsi01G011780
Synteny	Lsi01G011780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAATATTGTGTGTAGATGACAGGAGAAGTAGCTACACGTGATATATATTCAAGTATGTTTTCTGCATAGTTATACCATTACTTTGGATCAACAACTTCAGTTGCTTATTGTCTAAAACAATCAGGTTAAATGCGATGGTGAAAACAAAGGAAAGACAGAATAGTAATCCTAATCATCTTTCTGGCTCTTCAAACTCTGTTATTGATTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGAAAGTCACAATTCTAGTGCCTCCTATTTCAATAATAACAAAATCCTCAACTCCCAATGCAGAACAAAGTCAGCTGCAACCAATTACGCAAAAGGTATCAAATTGCCAAACAGAAGCTCTTGAAGAGACATGTCTTGAAGCGCCCGCTACTGTGCTGCCATCATCTTCTAAAAATGTTAATCAACAAAGTCCAAAATCTGCTGCTGCTCATTGTAATTTGCCAACAAAAGAGACATTGAAGCAAGCTATCACGCCCCCAAATCCAGATGAAGCTTTCGATTCAAGGCCTTGTAGGGTTATAGGATTATTGAACAGCACTAAATCTATGAAGCAGCAGCCTAGACAGTTACATTACCCTGGTGGCTTTCTCACAGGAGGCACATTGTTAAATCAGAGACTCAGGGCAGTTAATCTGGAGAGGAAGCTGCAAAAAGCTGGTGGTTTAAGTAGGTGGTTGGAATCACTTGGACTGAACCAATTTGTAGGTATTTTCCAGAGAAGGAGTATCAATAAGTTTCACCTGGTAAATCTAACCATGAAAAAGCTGAAAGATATGGGTGCAAATGCGGTGGGGCCACGTAGAAAACTAATACACGCAATTGAGTGTGTCTGTCAACCCTATAGTTCTGAAACTTTTGAGCGGGTTTATGGGATTTAACCAATGTTTTAAAGCCCGTCCTTCAGCTCCCTTGTAAGCAGTTCCATCCTTCTTGGTGAATCTTGAATTGTTGGCTGTACAAAGAGATGGATAGATTGGTTTAGTTCTAAATGTGTCTATTGAGTTTTCAAAGGATTGATGGCTGAAATAGTGTATGGTTGAGTGTCTTTCTCTTGCCTTTGCATCTGGATTTTCTTCTTCAATAGTCAGGGGACTGAAAAATAGGCAGAGAACTCTGTAAAGCTCCAGCTCTTGGATAGTGAAGATTGAGAGCACATGTTCTCTCAAATGTGCTGGGTTTTTATATAGAACAAGATCACCATATAATCAAGAGTCAGAATGATAATAGGGGTGATTTGGAATGCATCTTTCATCTGTCATTTTATTCCAACATTTTGTGCAGTAGGAGACTGTTCATTGGTAGATACACAGCATTGGGGCTAGGAGTTTGAAAATAATACCAAGCTAATAGAGCAATCAATAGAGAAGCGATAGATGTAGTGGTTATTTTGGAAATTCTTATAGAAATTTTGTGAATTTTTTTTTTTTTTTTTTAACAGAGGAAAGATGCT

mRNA sequence

GACAATATTGTGTGTAGATGACAGGAGAAGTAGCTACACGTTAAATGCGATGGTGAAAACAAAGGAAAGACAGAATAGTAATCCTAATCATCTTTCTGGCTCTTCAAACTCTGTTATTGATTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGAAAGTCACAATTCTAGTGCCTCCTATTTCAATAATAACAAAATCCTCAACTCCCAATGCAGAACAAAGTCAGCTGCAACCAATTACGCAAAAGGTATCAAATTGCCAAACAGAAGCTCTTGAAGAGACATGTCTTGAAGCGCCCGCTACTGTGCTGCCATCATCTTCTAAAAATGTTAATCAACAAAGTCCAAAATCTGCTGCTGCTCATTGTAATTTGCCAACAAAAGAGACATTGAAGCAAGCTATCACGCCCCCAAATCCAGATGAAGCTTTCGATTCAAGGCCTTGTAGGGTTATAGGATTATTGAACAGCACTAAATCTATGAAGCAGCAGCCTAGACAGTTACATTACCCTGGTGGCTTTCTCACAGGAGGCACATTGTTAAATCAGAGACTCAGGGCAGTTAATCTGGAGAGGAAGCTGCAAAAAGCTGGTGGTTTAAGTAGGTGGTTGGAATCACTTGGACTGAACCAATTTGTAGGTATTTTCCAGAGAAGGAGTATCAATAAGTTTCACCTGGTAAATCTAACCATGAAAAAGCTGAAAGATATGGGTGCAAATGCGGTGGGGCCACGTAGAAAACTAATACACGCAATTGAGTGTGTCTGTCAACCCTATAGTTCTGAAACTTTTGAGCGGAGGAAAGATGCT

Coding sequence (CDS)

ATGGTGAAAACAAAGGAAAGACAGAATAGTAATCCTAATCATCTTTCTGGCTCTTCAAACTCTGTTATTGATTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGAAAGTCACAATTCTAGTGCCTCCTATTTCAATAATAACAAAATCCTCAACTCCCAATGCAGAACAAAGTCAGCTGCAACCAATTACGCAAAAGGTATCAAATTGCCAAACAGAAGCTCTTGAAGAGACATGTCTTGAAGCGCCCGCTACTGTGCTGCCATCATCTTCTAAAAATGTTAATCAACAAAGTCCAAAATCTGCTGCTGCTCATTGTAATTTGCCAACAAAAGAGACATTGAAGCAAGCTATCACGCCCCCAAATCCAGATGAAGCTTTCGATTCAAGGCCTTGTAGGGTTATAGGATTATTGAACAGCACTAAATCTATGAAGCAGCAGCCTAGACAGTTACATTACCCTGGTGGCTTTCTCACAGGAGGCACATTGTTAAATCAGAGACTCAGGGCAGTTAATCTGGAGAGGAAGCTGCAAAAAGCTGGTGGTTTAAGTAGGTGGTTGGAATCACTTGGACTGAACCAATTTGTAGGTATTTTCCAGAGAAGGAGTATCAATAAGTTTCACCTGGTAAATCTAACCATGAAAAAGCTGAAAGATATGGGTGCAAATGCGGTGGGGCCACGTAGAAAACTAATACACGCAATTGAGTGTGTCTGTCAACCCTATAGTTCTGAAACTTTTGAGCGGAGGAAAGATGCT

Protein sequence

MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAEQSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQAITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERKLQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIECVCQPYSSETFERRKDA

Homology

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BLAST of Lsi01G011780 vs. ExPASy Swiss-Prot
Match: Q3UES3 (Poly [ADP-ribose] polymerase tankyrase-2 OS=Mus musculus OX=10090 GN=Tnks2 PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 6.4e-04
Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 174 AVNLERKLQKAG---GLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVG 233
           A  L+RK + +G    +++++ +LGL   + IF+R  I    LV +  K+LK++G NA G
Sbjct: 863 ATGLQRK-EDSGIDFSITQFIRNLGLEHLMDIFEREQITLDVLVEMGHKELKEIGINAYG 922

Query: 234 PRRKLIHAIE 241
            R KLI  +E
Sbjct: 923 HRHKLIKGVE 931

[Close]

BLAST of Lsi01G011780 vs. ExPASy TrEMBL
Match: A0A1S3CIZ6 (uncharacterized protein LOC103500944 OS=Cucumis melo OX=3656 GN=LOC103500944 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.9e-118
Identity = 217/253 (85.77%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK++QNSNPNHLSGSSN VIDLDMHGDDSWVVVKKQK+TILVPPIS++TKSSTP+A 
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           QSQLQPITQKVSNCQT ALEET +EAPA VLPSSS+N NQQS KSAAAHC L  KE LKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERK 180
           A+TPPNPD AF+SR  +V+GL NSTKSMKQQPRQLH PGGFL GGTLLNQRLRA+NLERK
Sbjct: 121 AVTPPNPDNAFNSRSYKVLGLSNSTKSMKQQPRQLHCPGGFLAGGTLLNQRLRALNLERK 180

Query: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240
           LQKAGGLSRWLESLGL+QFVGIF+R+SI KFHLVNLTMKKLKDMGANAVGPRRKLIHAIE
Sbjct: 181 LQKAGGLSRWLESLGLDQFVGIFKRKSITKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240

Query: 241 CVCQPYSSETFER 254
           CVCQPYSSE F+R
Sbjct: 241 CVCQPYSSEPFDR 253

[Close]

BLAST of Lsi01G011780 vs. ExPASy TrEMBL
Match: A0A0A0KF34 (SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G476650 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.5e-115
Identity = 214/252 (84.92%), Postives = 229/252 (90.87%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK++QNS+PNHLSGSSNSVIDLDMHGDD WVVVKKQKVTILVPPISI+TKS+ PN E
Sbjct: 1   MVKTKQKQNSSPNHLSGSSNSVIDLDMHGDDGWVVVKKQKVTILVPPISIVTKSAPPNVE 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           QSQLQPITQKVSNCQT AL ETCLEAPA VL S+S+N NQQS KSAAAHC L  KE LKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALVETCLEAPANVLLSTSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERK 180
           A+TPPNPD  F+SR  +V+GL NSTKSMKQQPRQLH PGGFLTGGTLLN RLRA+NLER 
Sbjct: 121 AVTPPNPDNVFNSRSYKVLGLSNSTKSMKQQPRQLHCPGGFLTGGTLLNLRLRALNLERN 180

Query: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240
           LQKAGGL RWLESLGL+QFVGIFQR+SI+KFHLVNLTMKKLKDMGANAVGPRRKLIHAIE
Sbjct: 181 LQKAGGLIRWLESLGLDQFVGIFQRKSISKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240

Query: 241 CVCQPYSSETFE 253
           CVCQPYSSE FE
Sbjct: 241 CVCQPYSSEPFE 252

[Close]

BLAST of Lsi01G011780 vs. ExPASy TrEMBL
Match: A0A6J1ECJ6 (uncharacterized protein LOC111432962 OS=Cucurbita moschata OX=3662 GN=LOC111432962 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.8e-111
Identity = 215/252 (85.32%), Postives = 225/252 (89.29%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK+RQNSNP HLSGSSNS IDLD+HGDDSWVVVKKQKVTILVPP SI+TKSS+PNA 
Sbjct: 1   MVKTKQRQNSNPIHLSGSSNSDIDLDLHGDDSWVVVKKQKVTILVPPTSIVTKSSSPNAG 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           QSQLQPITQKVSNCQ  ALEETCLEAPA  LPS+SKNV Q    S AAHCN   KE LKQ
Sbjct: 61  QSQLQPITQKVSNCQAGALEETCLEAPAVQLPSTSKNVKQ----SVAAHCNSTVKEPLKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERK 180
           A+T PNPDEA +SRPC+V GLLNS KSMK QP  LH PGGFLTG TLLNQRLRA+NLERK
Sbjct: 121 AVT-PNPDEACNSRPCKVSGLLNSAKSMK-QPTHLHCPGGFLTGSTLLNQRLRALNLERK 180

Query: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240
           LQKAGGLSRWLESLGLNQFVGIFQRRSI+KFHLVNLTMKKLKDMGANAVGPRRKLIHAIE
Sbjct: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSISKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240

Query: 241 CVCQPYSSETFE 253
           CVCQPYSSETFE
Sbjct: 241 CVCQPYSSETFE 246

[Close]

BLAST of Lsi01G011780 vs. ExPASy TrEMBL
Match: A0A6J1IPD6 (uncharacterized protein LOC111477603 OS=Cucurbita maxima OX=3661 GN=LOC111477603 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.9e-108
Identity = 210/252 (83.33%), Postives = 223/252 (88.49%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK+RQNSNP HLSGSSNS IDLD+ GDDSWVVVKKQKVTILVPP SI+TKSS+PNA 
Sbjct: 1   MVKTKQRQNSNPIHLSGSSNSDIDLDLLGDDSWVVVKKQKVTILVPPTSIVTKSSSPNAG 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           QSQLQPITQ VSNCQ  ALEETC E+PA VLPS+SKNV Q    S AAHCN   KE LKQ
Sbjct: 61  QSQLQPITQNVSNCQAGALEETCQESPAVVLPSTSKNVKQ----SIAAHCNSTVKEPLKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERK 180
           A+T PNPDEA +SRPC+V GLLNS KSMK QP  LH PGGFLTG TLLNQRL+A+NLERK
Sbjct: 121 AVT-PNPDEACNSRPCKVSGLLNSAKSMK-QPTHLHCPGGFLTGSTLLNQRLKALNLERK 180

Query: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240
           LQKAGGLSRWLESLGLNQFVGIFQR+SI+KFHLVNLTMKKLKDMGANAVGPRRKLIHAIE
Sbjct: 181 LQKAGGLSRWLESLGLNQFVGIFQRKSISKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240

Query: 241 CVCQPYSSETFE 253
           CVCQPYSSETFE
Sbjct: 241 CVCQPYSSETFE 246

[Close]

BLAST of Lsi01G011780 vs. ExPASy TrEMBL
Match: A0A5D3CAT4 (Sterile alpha motif domain-containing protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001870 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 5.3e-94
Identity = 179/213 (84.04%), Postives = 195/213 (91.55%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK++QNSNPNHLSGSSN VIDLDMHGDDSWVVVKKQK+TILVPPIS++TKSSTP+A 
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           QSQLQPITQKVSNCQT ALEET +EAPA VLPSSS+N NQQS KSAAAHC L  KE LKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERK 180
           A+TPPNPD AF+SR  +V+GL NSTKSMKQQPRQLH PGGFL GGTLLNQRLRA+NLERK
Sbjct: 121 AVTPPNPDNAFNSRSYKVLGLSNSTKSMKQQPRQLHCPGGFLAGGTLLNQRLRALNLERK 180

Query: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSINKFHL 214
           LQKAGGLSRWLESLGL+QFVGIF+R+SI KFHL
Sbjct: 181 LQKAGGLSRWLESLGLDQFVGIFKRKSITKFHL 213

[Close]

BLAST of Lsi01G011780 vs. NCBI nr
Match: XP_038880855.1 (uncharacterized protein LOC120072539 [Benincasa hispida])

HSP 1 Score: 451.1 bits (1159), Expect = 6.6e-123
Identity = 231/254 (90.94%), Postives = 240/254 (94.49%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK+ QN NPNHLSGSSNSVIDLDMH DDSWVVVKKQKVTILVPPISI+TKSSTPN E
Sbjct: 1   MVKTKQGQN-NPNHLSGSSNSVIDLDMHEDDSWVVVKKQKVTILVPPISIVTKSSTPNEE 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           Q QLQPITQKVSNCQTEAL ETCLE+PATVLPSSSK VNQQS KSA AHCNL TKE+ KQ
Sbjct: 61  QRQLQPITQKVSNCQTEALAETCLESPATVLPSSSKTVNQQSSKSAGAHCNLTTKESSKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMK-QQPRQLHYPGGFLTGGTLLNQRLRAVNLER 180
           AITP NPDEA DSRPC+V+GLLNSTKSMK QQPRQLHYPGGFLTGGTLLNQRLRA+NLER
Sbjct: 121 AITPLNPDEACDSRPCKVLGLLNSTKSMKQQQPRQLHYPGGFLTGGTLLNQRLRALNLER 180

Query: 181 KLQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAI 240
           KLQKAGGLSRWLESLGLNQFVGIFQR+SINKFHLVNLTMKKLKDMGANAVGPRRKLIHAI
Sbjct: 181 KLQKAGGLSRWLESLGLNQFVGIFQRKSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAI 240

Query: 241 ECVCQPYSSETFER 254
           ECVCQPY+SETFER
Sbjct: 241 ECVCQPYNSETFER 253

[Close]

BLAST of Lsi01G011780 vs. NCBI nr
Match: XP_008462633.1 (PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo])

HSP 1 Score: 433.3 bits (1113), Expect = 1.4e-117
Identity = 217/253 (85.77%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK++QNSNPNHLSGSSN VIDLDMHGDDSWVVVKKQK+TILVPPIS++TKSSTP+A 
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           QSQLQPITQKVSNCQT ALEET +EAPA VLPSSS+N NQQS KSAAAHC L  KE LKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERK 180
           A+TPPNPD AF+SR  +V+GL NSTKSMKQQPRQLH PGGFL GGTLLNQRLRA+NLERK
Sbjct: 121 AVTPPNPDNAFNSRSYKVLGLSNSTKSMKQQPRQLHCPGGFLAGGTLLNQRLRALNLERK 180

Query: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240
           LQKAGGLSRWLESLGL+QFVGIF+R+SI KFHLVNLTMKKLKDMGANAVGPRRKLIHAIE
Sbjct: 181 LQKAGGLSRWLESLGLDQFVGIFKRKSITKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240

Query: 241 CVCQPYSSETFER 254
           CVCQPYSSE F+R
Sbjct: 241 CVCQPYSSEPFDR 253

[Close]

BLAST of Lsi01G011780 vs. NCBI nr
Match: XP_011657741.1 (uncharacterized protein LOC105435895 [Cucumis sativus] >XP_031742813.1 uncharacterized protein LOC105435895 [Cucumis sativus] >XP_031742814.1 uncharacterized protein LOC105435895 [Cucumis sativus] >KGN48325.1 hypothetical protein Csa_004169 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 5.1e-115
Identity = 214/252 (84.92%), Postives = 229/252 (90.87%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK++QNS+PNHLSGSSNSVIDLDMHGDD WVVVKKQKVTILVPPISI+TKS+ PN E
Sbjct: 1   MVKTKQKQNSSPNHLSGSSNSVIDLDMHGDDGWVVVKKQKVTILVPPISIVTKSAPPNVE 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           QSQLQPITQKVSNCQT AL ETCLEAPA VL S+S+N NQQS KSAAAHC L  KE LKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALVETCLEAPANVLLSTSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERK 180
           A+TPPNPD  F+SR  +V+GL NSTKSMKQQPRQLH PGGFLTGGTLLN RLRA+NLER 
Sbjct: 121 AVTPPNPDNVFNSRSYKVLGLSNSTKSMKQQPRQLHCPGGFLTGGTLLNLRLRALNLERN 180

Query: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240
           LQKAGGL RWLESLGL+QFVGIFQR+SI+KFHLVNLTMKKLKDMGANAVGPRRKLIHAIE
Sbjct: 181 LQKAGGLIRWLESLGLDQFVGIFQRKSISKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240

Query: 241 CVCQPYSSETFE 253
           CVCQPYSSE FE
Sbjct: 241 CVCQPYSSEPFE 252

[Close]

BLAST of Lsi01G011780 vs. NCBI nr
Match: XP_022925561.1 (uncharacterized protein LOC111432962 [Cucurbita moschata] >XP_022925562.1 uncharacterized protein LOC111432962 [Cucurbita moschata])

HSP 1 Score: 411.4 bits (1056), Expect = 5.8e-111
Identity = 215/252 (85.32%), Postives = 225/252 (89.29%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK+RQNSNP HLSGSSNS IDLD+HGDDSWVVVKKQKVTILVPP SI+TKSS+PNA 
Sbjct: 1   MVKTKQRQNSNPIHLSGSSNSDIDLDLHGDDSWVVVKKQKVTILVPPTSIVTKSSSPNAG 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           QSQLQPITQKVSNCQ  ALEETCLEAPA  LPS+SKNV Q    S AAHCN   KE LKQ
Sbjct: 61  QSQLQPITQKVSNCQAGALEETCLEAPAVQLPSTSKNVKQ----SVAAHCNSTVKEPLKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERK 180
           A+T PNPDEA +SRPC+V GLLNS KSMK QP  LH PGGFLTG TLLNQRLRA+NLERK
Sbjct: 121 AVT-PNPDEACNSRPCKVSGLLNSAKSMK-QPTHLHCPGGFLTGSTLLNQRLRALNLERK 180

Query: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240
           LQKAGGLSRWLESLGLNQFVGIFQRRSI+KFHLVNLTMKKLKDMGANAVGPRRKLIHAIE
Sbjct: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSISKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240

Query: 241 CVCQPYSSETFE 253
           CVCQPYSSETFE
Sbjct: 241 CVCQPYSSETFE 246

[Close]

BLAST of Lsi01G011780 vs. NCBI nr
Match: XP_022977231.1 (uncharacterized protein LOC111477603 [Cucurbita maxima] >XP_022977232.1 uncharacterized protein LOC111477603 [Cucurbita maxima] >XP_022977233.1 uncharacterized protein LOC111477603 [Cucurbita maxima] >XP_022977234.1 uncharacterized protein LOC111477603 [Cucurbita maxima])

HSP 1 Score: 401.4 bits (1030), Expect = 6.0e-108
Identity = 210/252 (83.33%), Postives = 223/252 (88.49%), Query Frame = 0


Query: 1   MVKTKERQNSNPNHLSGSSNSVIDLDMHGDDSWVVVKKQKVTILVPPISIITKSSTPNAE 60
           MVKTK+RQNSNP HLSGSSNS IDLD+ GDDSWVVVKKQKVTILVPP SI+TKSS+PNA 
Sbjct: 1   MVKTKQRQNSNPIHLSGSSNSDIDLDLLGDDSWVVVKKQKVTILVPPTSIVTKSSSPNAG 60

Query: 61  QSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPKSAAAHCNLPTKETLKQ 120
           QSQLQPITQ VSNCQ  ALEETC E+PA VLPS+SKNV Q    S AAHCN   KE LKQ
Sbjct: 61  QSQLQPITQNVSNCQAGALEETCQESPAVVLPSTSKNVKQ----SIAAHCNSTVKEPLKQ 120

Query: 121 AITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQLHYPGGFLTGGTLLNQRLRAVNLERK 180
           A+T PNPDEA +SRPC+V GLLNS KSMK QP  LH PGGFLTG TLLNQRL+A+NLERK
Sbjct: 121 AVT-PNPDEACNSRPCKVSGLLNSAKSMK-QPTHLHCPGGFLTGSTLLNQRLKALNLERK 180

Query: 181 LQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240
           LQKAGGLSRWLESLGLNQFVGIFQR+SI+KFHLVNLTMKKLKDMGANAVGPRRKLIHAIE
Sbjct: 181 LQKAGGLSRWLESLGLNQFVGIFQRKSISKFHLVNLTMKKLKDMGANAVGPRRKLIHAIE 240

Query: 241 CVCQPYSSETFE 253
           CVCQPYSSETFE
Sbjct: 241 CVCQPYSSETFE 246

[Close]

BLAST of Lsi01G011780 vs. TAIR 10
Match: AT3G11890.2 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 91.7 bits (226), Expect = 9.5e-19
Identity = 67/212 (31.60%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 37  KKQKVTILVPPISIITKSSTPNAEQSQLQPITQKVSNCQTEALEE-TCLEAPATVLPSSS 96
           K   V   +P +S+    +      SQ Q  T +V   + EA  + T ++ P  V+  S 
Sbjct: 334 KATHVHTAMPSLSVTEHCTLQKPATSQSQAETSRVQTVEPEACPDFTSVDKPEIVMSRSL 393

Query: 97  KNVNQQSPKSAAAHCNLPTKETLKQAITPPNPDEAFDSRPCRVIGLLNSTKSMKQQPRQL 156
                 +PK +        +E+ K      N D   +    R               + +
Sbjct: 394 TTRKAPAPKRS-------LQESRK------NQDRRVEIHRRRA------------GHKPI 453

Query: 157 HYPGGFLTGGTLLNQRLRAVNLERKLQKAGGLSRWLESLGL-NQFVGIFQRRSINKFHLV 216
            +P    +   + N++LR +NLE+K++KAGGL+ W+ S+GL  +F  + + + ++KF + 
Sbjct: 454 RFPRVMCSSVVMDNEKLRVLNLEKKVEKAGGLNEWVGSIGLGREFERMLRGQRMSKFQMA 513

Query: 217 NLTMKKLKDMGANAVGPRRKLIHAIECVCQPY 247
           NLTM+KLK MGA AVGPRRKLIHAI CV  P+
Sbjct: 514 NLTMEKLKQMGALAVGPRRKLIHAIGCVYHPH 520

[Close]

BLAST of Lsi01G011780 vs. TAIR 10
Match: AT3G11890.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 67/223 (30.04%), Postives = 113/223 (50.67%), Query Frame = 0


Query: 45  VPPISIITKSSTPNAEQSQLQPITQKVSNCQTEALEETCLEAPATVLPSSSKNVNQQSPK 104
           VP    + K ST +  Q++L+  T+K +     A+    +    ++L  S+     + P 
Sbjct: 272 VPEHYSLQKPST-SQSQAELRAKTRKATLVHAAAIPSLPVPEHYSLLKPSTSQSQAEKPA 331

Query: 105 SAAAHCNLPTKETLKQAITPP----NPDEAFDSR-------PCRVIGLLNSTKSMKQQ-- 164
           ++ +       +T++    P     +  E   SR       P     L  S K+  ++  
Sbjct: 332 TSQSQAETSRVQTVEPEACPDFTSVDKPEIVMSRSLTTRKAPAPKRSLQESRKNQDRRVE 391

Query: 165 -------PRQLHYPGGFLTGGTLLNQRLRAVNLERKLQKAGGLSRWLESLGL-NQFVGIF 224
                   + + +P    +   + N++LR +NLE+K++KAGGL+ W+ S+GL  +F  + 
Sbjct: 392 IHRRRAGHKPIRFPRVMCSSVVMDNEKLRVLNLEKKVEKAGGLNEWVGSIGLGREFERML 451

Query: 225 QRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIECVCQPY 247
           + + ++KF + NLTM+KLK MGA AVGPRRKLIHAI CV  P+
Sbjct: 452 RGQRMSKFQMANLTMEKLKQMGALAVGPRRKLIHAIGCVYHPH 493

[Close]

BLAST of Lsi01G011780 vs. TAIR 10
Match: AT5G23680.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.3e-07
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 186 GLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIECVCQP 245
           G+  WL+ LGL ++  +F+   +++  L  LT++ LKDMG NAVG RRK+  AI+ + + 
Sbjct: 234 GVKIWLQELGLGRYWPMFEMHEVDEQVLPLLTLEDLKDMGINAVGSRRKMYCAIQKLGRE 293

Query: 246 YS 248
           +S
Sbjct: 294 FS 295

[Close]

BLAST of Lsi01G011780 vs. TAIR 10
Match: AT3G48800.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 186 GLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRKLIHAIECVCQP 245
           G+  WL+ LGL ++  +F+   +++  L  LT++ LKDMG NAVG RRK+  AI+ + + 
Sbjct: 217 GVKIWLQELGLGRYWPMFEIHEVDEEVLPLLTLEDLKDMGINAVGSRRKMFCAIQKLGRE 276

Query: 246 YS 248
           +S
Sbjct: 277 FS 278

[Close]

BLAST of Lsi01G011780 vs. TAIR 10
Match: AT2G45700.1 (sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 50.1 bits (118), Expect = 3.2e-06
Identity = 24/74 (32.43%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 175 VNLERKLQKAGGLSRWLESLGLNQFVGIFQRRSINKFHLVNLTMKKLKDMGANAVGPRRK 234
           V L + +     + +WL SLGL ++  +F R  I+   L +LT + L  +G  ++GPR+K
Sbjct: 232 VQLPQLVTDLSPVLKWLRSLGLAKYEDVFIREEIDWDTLQSLTEEDLLSIGITSLGPRKK 291

Query: 235 LIHAIECVCQPYSS 249
           +++A+  V  P++S
Sbjct: 292 IVNALSGVRDPFAS 305

The following BLAST results are available for this feature:

BLAST of Lsi01G011780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3UES3	6.4e-04	37.14	Poly [ADP-ribose] polymerase tankyrase-2 OS=Mus musculus OX=10090 GN=Tnks2 PE=2 ...	[more]

BLAST of Lsi01G011780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CIZ6	6.9e-118	85.77	uncharacterized protein LOC103500944 OS=Cucumis melo OX=3656 GN=LOC103500944 PE=...	[more]
A0A0A0KF34	2.5e-115	84.92	SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G476650 PE=4 SV...	[more]
A0A6J1ECJ6	2.8e-111	85.32	uncharacterized protein LOC111432962 OS=Cucurbita moschata OX=3662 GN=LOC1114329...	[more]
A0A6J1IPD6	2.9e-108	83.33	uncharacterized protein LOC111477603 OS=Cucurbita maxima OX=3661 GN=LOC111477603...	[more]
A0A5D3CAT4	5.3e-94	84.04	Sterile alpha motif domain-containing protein, putative isoform 1 OS=Cucumis mel...	[more]

BLAST of Lsi01G011780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880855.1	6.6e-123	90.94	uncharacterized protein LOC120072539 [Benincasa hispida]	[more]
XP_008462633.1	1.4e-117	85.77	PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo]	[more]
XP_011657741.1	5.1e-115	84.92	uncharacterized protein LOC105435895 [Cucumis sativus] >XP_031742813.1 uncharact...	[more]
XP_022925561.1	5.8e-111	85.32	uncharacterized protein LOC111432962 [Cucurbita moschata] >XP_022925562.1 unchar...	[more]
XP_022977231.1	6.0e-108	83.33	uncharacterized protein LOC111477603 [Cucurbita maxima] >XP_022977232.1 uncharac...	[more]

BLAST of Lsi01G011780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11890.2	9.5e-19	31.60	Sterile alpha motif (SAM) domain-containing protein	[more]
AT3G11890.1	1.2e-18	30.04	Sterile alpha motif (SAM) domain-containing protein	[more]
AT5G23680.1	8.3e-07	40.32	Sterile alpha motif (SAM) domain-containing protein	[more]
AT3G48800.1	1.1e-06	40.32	Sterile alpha motif (SAM) domain-containing protein	[more]
AT2G45700.1	3.2e-06	32.43	sterile alpha motif (SAM) domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001660	Sterile alpha motif domain	SMART	SM00454	SAM_4	coord: 179..245 e-value: 9.0E-7 score: 38.5
IPR001660	Sterile alpha motif domain	PFAM	PF07647	SAM_2	coord: 186..242 e-value: 8.3E-12 score: 45.0
IPR001660	Sterile alpha motif domain	PROSITE	PS50105	SAM_DOMAIN	coord: 187..245 score: 11.632251
IPR013761	Sterile alpha motif/pointed domain superfamily	GENE3D	1.10.150.50		coord: 175..244 e-value: 1.9E-13 score: 52.2
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	47769	SAM/Pointed domain	coord: 185..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR10627	SCP160	coord: 3..250
None	No IPR available	PANTHER	PTHR10627:SF68	F26K24.15 PROTEIN-RELATED	coord: 3..250
None	No IPR available	CDD	cd09487	SAM_superfamily	coord: 187..241 e-value: 5.50367E-14 score: 63.0273

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G011780.1	Lsi01G011780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding