Lsi01G011210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G011210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat domain-containing protein 83
Location	chr01: 9293214 .. 9295990 (-)
RNA-Seq Expression	Lsi01G011210
Synteny	Lsi01G011210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTAGAAGATGGGAAAGAGGGGCCCACTCAACAATTTCATCGTCTTTAAGATTCCCTTCAAGCCCCGTCTCCCAAACTTTGTTTTCAGCATTCCGAACATTAGCCACAGTAGCATTAGATCGATTGGAGAGTCTATACAGCTTCTAGGATACAAGGTGGGAAATTCTGCATCACTGACCCAAACATCATGAAAAAAAGAAGTGTGAATATGATTGCCCAAACATCTGCTAATGTAGGTTGTAACTATACCATAGCATTGAAATGGATCTCCATGGAGCTTTTGCAGATTCTAAATTGGAAGATATTGCCAATGTTGGATAGCTGCTATTGAGTACTTTGCGTTAAGGATATTCCATCTAAGAGCACCATCTTCACAGAGGAATCTCCATATCCATTTAGATAAAAGAGCGTCATTTCGATACTTGAGATTGCCAATAAAATAACTAACCCACCCAATTGAAGAGGAAGTTGAATTTTTGCCTAATTCACATTGTGCGGCATCTTCCCAAAGAAAATTCCTAATGATCTTTTCAATTGTTTTTGCAATCTTGGTAGACATTTTGAATAAGGATAAATAATACATAGACATATTAGAAAGGGTAGATTGGATGATTGTTTGCCTACCCTCCTTTGGATATGAAAGAAAACTTCCAATTACGAAATCTATGTTGGATTTTCTCCACAATTGATGTCCTGAGTCCTGAATAAGATTGGCTCAGTTTTTAGTTAAAAATGAAGGGCAGTCAATGGGTCGGTATTTCTCTCGGAAGTTTGAACCATGGGATGAAAAGCTGCAGGGAAAGTGAAAGTCCCCCCCGCATGGAGGGTGGTTTTAAATGTCGCGGTTTCCTTTGAGTCAATAGAGTAATATTGAGTCAAACCATTGTGTTCTTCATGACATTTTCATTAATTCTTTGTATTCTTCATTTTCAATGTTATGTTAAAAATAATTACAAATAAATTAATGTCATACACATCCCTGATCCCACACTAACTAAAGTATAGTTGCACTAAAACTAAATTAGCTTTGATTGTAGAAAGATTTTCATTAAGTTCAATTGTTTTGCTAAAATGATTCCCAAAAAAAAATGTTTTACTAGTTTATTTTCTTTATAATTAAATATGTAATTTATAACGGAAAACTAAGTTAATATGGAATTAATTGGCATAGAAAATAAACTAAACTTGGAGTGGACTGTAGTACATTCAGGGTATTATCTTTGTTCCCAAGAAATATATATATTTATGAGATTGTATGTATTCATAATAATGAGATTGTATGTATTCATAATACATTGTAGTGCGGAAAGTTCTTTTATTTTAAAATAATATATATCTATAAAGCATCGTTGTCTAAATACTCATGTTCAACAGTACAAGTACGACAAGATGGACATTAAGGCGATGGTGATGGTTCTAATATATAAATGTTTACAGATACTTCTTTCCTTTTCACAGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTGCCTCGGTAGATGGGATGATTCGGGTTTGGAAGACATGAGAGCCAAGAGGAGGAAGAACATGAATTTCCTCAGCTTAATAATGCACATTATGCTCTGAGGTATTTAATTCTTCACTTCTTGATACAGTTTATTGCAGTTATTCCAATCTTGAATTATTAGAGTTTGAAACTTGTGGCTTTTAAGAATCATGATAATGCTGGTGGTGTTTAATTTATCAGTCAATATCAAATTGACATAGACTGGTTGATCCTGGTCCAACAATAAGAATCCTTGCCAGTACAATAATTCATAATTTTGGGTCTTTAACTTAATGAAGTTACTTGATAAAGTTGAACAACTTGATTGAAAAAGTTGTTTTTTTAATTGCTTTGGGTCTCAAACTTGAATTTTGTTTACCGTACAAGTCTTAGCTGTACAAGATCAGCTAGGCTTTGATATCAAGATATTTTAAATGTGTTTAAAGGCTAGATTTATAACAACTTCAACCCCCTAATTTATTGTTCCACCCTTTACCGACACAGTCCCGTCGTGTGCACTGCATTGTATAGAGTTTTCCCCTGGTGAATCACAAATCATTTCAAACCATTTGGTGTTGAAAGTTCAACCTCAAAGCTGATAATTTCAAGTGAATTAGTTGAATCTCTGTTTTCCATTCTCTAAAATTTCATGTGTAGATTTCTTGATTTAAAACAAAGGAAAGTTATAGCTTTGGCATTTACATTGATCTCTTATATGCTTTGTTTCAGGTTCTGCAGAATGCCAAACATAATATCTGAATGGTTTTTGACTGATCTAAAGCCTCTCTAACTTTGTCCTTGAGTTTCAACTAAGATCATAAAGTTGTTTGTTGACTATTCCAATTCCAAACTCGATTATGAAACCGTAATTTGTAAATTAAACGACGTTGTATGACGTTAATTCGATGTTCATTCATTGACCCTTAGAATTGAAGTTTTTATTCATTTTTATCAGTCTCTGAATCAACAATCAGATCATCTGGTAAAGAATTGAGAAAGAGGCAATAAGCTATGGTAAGACAATTTGTTTCTCCTCAAAATCAAAGAGAGTGCAGAAACATATTGATTACAAAGGCAAAACAAGGTTGATACCTTAAATTTGGTGTACCAAATTTACAAGAATGAAGTGGCAATTGGCTTACACTGACAAAAGTAAATGAAGATTGTCTAGAACACAAGTCAGTAGTTGGACCTGCCTTCCAAATTCAATAAATTTCCATCATAATTTCACTTTGAAATTTCCTTCTTCA

mRNA sequence

ATGGATATTCCCTTCAAGCCCCGTCTCCCAAACTTTGTTTTCAGCATTCCGAACATTAGCCACAGTAGCATTAGATCGATTGGAGAGTCTATACAGCTTCTAGGATACAAGCATCGTTGTCTAAATACTCATGTTCAACAGTACAAGTACGACAAGATGGACATTAAGGCGATGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTGCCTCGGTAGATGGGATGATTCGGGTTTGGAAGACATGAGAGCCAAGAGGAGGAAGAACATGAATTTCCTCAGCTTAATAATGCACATTATGCTCTGAGGTTCTGCAGAATGCCAAACATAATATCTGAATGGTTTTTGACTGATCTAAAGCCTCTCTAACTTTGTCCTTGAGTTTCAACTAAGATCATAAAGTTGTTTGTTGACTATTCCAATTCCAAACTCGATTATGAAACCGTAATTTGTAAATTAAACGACGTTGTATGACGTTAATTCGATGTTCATTCATTGACCCTTAGAATTGAAGTTTTTATTCATTTTTATCAGTCTCTGAATCAACAATCAGATCATCTGGTAAAGAATTGAGAAAGAGGCAATAAGCTATGGTAAGACAATTTGTTTCTCCTCAAAATCAAAGAGAGTGCAGAAACATATTGATTACAAAGGCAAAACAAGGTTGATACCTTAAATTTGGTGTACCAAATTTACAAGAATGAAGTGGCAATTGGCTTACACTGACAAAAGTAAATGAAGATTGTCTAGAACACAAGTCAGTAGTTGGACCTGCCTTCCAAATTCAATAAATTTCCATCATAATTTCACTTTGAAATTTCCTTCTTCA

Coding sequence (CDS)

ATGGATATTCCCTTCAAGCCCCGTCTCCCAAACTTTGTTTTCAGCATTCCGAACATTAGCCACAGTAGCATTAGATCGATTGGAGAGTCTATACAGCTTCTAGGATACAAGCATCGTTGTCTAAATACTCATGTTCAACAGTACAAGTACGACAAGATGGACATTAAGGCGATGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTGCCTCGGTAGATGGGATGATTCGGGTTTGGAAGACATGA

Protein sequence

MDIPFKPRLPNFVFSIPNISHSSIRSIGESIQLLGYKHRCLNTHVQQYKYDKMDIKAMVTSVSYHPKDKCMITASVDGMIRVWKT

Homology

[Close]

BLAST of Lsi01G011210 vs. ExPASy TrEMBL
Match: A0A0A0KFA7 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G486680 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.0e-06
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. ExPASy TrEMBL
Match: A0A6J1BWH4 (WD repeat domain-containing protein 83 OS=Momordica charantia OX=3673 GN=LOC111005960 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.0e-06
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. ExPASy TrEMBL
Match: A0A6J1GD83 (WD repeat domain-containing protein 83 OS=Cucurbita moschata OX=3662 GN=LOC111452952 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.0e-06
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. ExPASy TrEMBL
Match: A0A1S3B1Y9 (WD repeat domain-containing protein 83 OS=Cucumis melo OX=3656 GN=LOC103485242 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.0e-06
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. ExPASy TrEMBL
Match: A0A6J1IRS5 (WD repeat domain-containing protein 83 OS=Cucurbita maxima OX=3661 GN=LOC111478130 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKD+CMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDECMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. NCBI nr
Match: XP_022133372.1 (WD repeat domain-containing protein 83 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. NCBI nr
Match: XP_022949610.1 (WD repeat domain-containing protein 83 [Cucurbita moschata] >XP_023543192.1 WD repeat domain-containing protein 83 [Cucurbita pepo subsp. pepo] >KAG7034421.1 WD repeat domain-containing protein 83, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. NCBI nr
Match: XP_004141980.1 (WD repeat domain-containing protein 83 [Cucumis sativus] >KGN48395.1 hypothetical protein Csa_004397 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. NCBI nr
Match: XP_008440996.1 (PREDICTED: WD repeat domain-containing protein 83 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKDKCMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDKCMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. NCBI nr
Match: XP_022978013.1 (WD repeat domain-containing protein 83 [Cucurbita maxima] >XP_022978014.1 WD repeat domain-containing protein 83 [Cucurbita maxima])

HSP 1 Score: 57.8 bits (138), Expect = 5.4e-05
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 57  AMVTSVSYHPKDKCMITASVDGMIRVWKT 86
           ++VTSVSYHPKD+CMITASVDG IRVWKT
Sbjct: 271 SVVTSVSYHPKDECMITASVDGTIRVWKT 299

[Close]

BLAST of Lsi01G011210 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 6.1e-07
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 58  MVTSVSYHPKDKCMITASVDGMIRVWK 85
           +VTSVSYHPK+ CM+T+SVDG IRVWK
Sbjct: 272 VVTSVSYHPKEDCMLTSSVDGTIRVWK 298

The following BLAST results are available for this feature:

BLAST of Lsi01G011210 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G011210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFA7	9.0e-06	89.66	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G...	[more]
A0A6J1BWH4	9.0e-06	89.66	WD repeat domain-containing protein 83 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GD83	9.0e-06	89.66	WD repeat domain-containing protein 83 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A1S3B1Y9	9.0e-06	89.66	WD repeat domain-containing protein 83 OS=Cucumis melo OX=3656 GN=LOC103485242 P...	[more]
A0A6J1IRS5	2.6e-05	86.21	WD repeat domain-containing protein 83 OS=Cucurbita maxima OX=3661 GN=LOC1114781...	[more]

BLAST of Lsi01G011210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133372.1	1.9e-05	89.66	WD repeat domain-containing protein 83 [Momordica charantia]	[more]
XP_022949610.1	1.9e-05	89.66	WD repeat domain-containing protein 83 [Cucurbita moschata] >XP_023543192.1 WD r...	[more]
XP_004141980.1	1.9e-05	89.66	WD repeat domain-containing protein 83 [Cucumis sativus] >KGN48395.1 hypothetica...	[more]
XP_008440996.1	1.9e-05	89.66	PREDICTED: WD repeat domain-containing protein 83 [Cucumis melo]	[more]
XP_022978013.1	5.4e-05	86.21	WD repeat domain-containing protein 83 [Cucurbita maxima] >XP_022978014.1 WD rep...	[more]

BLAST of Lsi01G011210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64730.1	6.1e-07	77.78	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 43..84 e-value: 0.0018 score: 27.5
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 59..85 score: 11.778342
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 12..85 e-value: 1.1E-5 score: 26.6
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 52..85 score: 10.574686
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	SUPERFAMILY	50998	Quinoprotein alcohol dehydrogenase-like	coord: 51..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G011210.1	Lsi01G011210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding