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Lsi01G010980 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGTAAAGGGAGGATATTAGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCTGGATCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGCAATGTTACTTGGTTTAACTCTATTTGTGACCTTTTCTCGTATGTGGGACTCTCTATCTTCTTGGGTAGATAATCGATCGTCTTTCATTTTGATAGTGAGTCGTTTTTATAATAATAAGTAAAGTCAAGAATAATAATCAAACTGGAGGAGCGAAGCAGCTCGACCGATAGGGAAAGGAGCGAAGCAGGATGGCTTGGTAAGCAAGCAACCTGTTATGTAGGCGCCAACTCCAAGTTCTTTCTCTTCTTTCTTTTTGATTTCGGGTTTCTTTCTTTTTTCAGGGGCCCAGAACGCTAAAAGGTGGGGGAGAAGCAAGCCGAACCTCTGATCGACCTGGAAACATCACAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGTAAGTAACTCAGCGAGTGCTTTCTAAGAAGGGCTTGACTTGGAAGAAGAAAATGAAATACGAACAACCGCGCTGGTCGTAATAGATCGACTTTCATGCTAGTTCTTGCTCCAGCATGAAAGTTCCATTTCAGGGAAGGACGACGTACCATGATACTTTCAGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTGCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCAGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATGTTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGGTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTATTTCTTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAA ATGTGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCTGGATCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGCAATGTTACTTGGTTTAACTCTATTTGTGACCTTTTCTCGTATGTGGGACTCTCTATCTTCTTGGGTAGATAATCGATCGTCTTTCATTTTGATAGGGCCCAGAACGCTAAAAGGTGGGGGAGAAGCAAGCCGAACCTCTGATCGACCTGGAAACATCACAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGGAAGGACGACGTACCATGATACTTTCAGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTGCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCAGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATGTTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGGTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTATTTCTTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAA ATGTGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCTGGATCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGCAATGTTACTTGGTTTAACTCTATTTGTGACCTTTTCTCGTATGTGGGACTCTCTATCTTCTTGGGTAGATAATCGATCGTCTTTCATTTTGATAGGGCCCAGAACGCTAAAAGGTGGGGGAGAAGCAAGCCGAACCTCTGATCGACCTGGAAACATCACAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGGAAGGACGACGTACCATGATACTTTCAGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTGCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCAGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATGTTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGGTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTATTTCTTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAA MWGSSEWRFPCREPDEGRPSRLDRRAGISRPYYHYAFAMLLGLTLFVTFSRMWDSLSSWVDNRSSFILIGPRTLKGGGEASRTSDRPGNITNSRRRERFEIPEGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAISFRRTIMRRTTDPLTIY Homology
BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: P60498 (NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=2 SV=1) HSP 1 Score: 378.6 bits (971), Expect = 6.6e-104 Identity = 199/205 (97.07%), Postives = 202/205 (98.54%), Query Frame = 0
BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: P60497 (NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE=1 SV=1) HSP 1 Score: 354.4 bits (908), Expect = 1.3e-96 Identity = 192/205 (93.66%), Postives = 196/205 (95.61%), Query Frame = 0
BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: Q02500 (NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 6.7e-96 Identity = 189/211 (89.57%), Postives = 195/211 (92.42%), Query Frame = 0
BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: P26850 (NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 PE=2 SV=2) HSP 1 Score: 256.9 bits (655), Expect = 2.9e-67 Identity = 141/187 (75.40%), Postives = 160/187 (85.56%), Query Frame = 0
BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: Q37626 (NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 PE=3 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 4.1e-45 Identity = 106/199 (53.27%), Postives = 141/199 (70.85%), Query Frame = 0
BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: A0A7J9DB23 (Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_020999 PE=3 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 3.4e-111 Identity = 222/236 (94.07%), Postives = 226/236 (95.76%), Query Frame = 0
BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: A0A7D5Y436 (NADH-ubiquinone oxidoreductase chain 6 OS=Luffa acutangula OX=56866 GN=nad6 PE=3 SV=1) HSP 1 Score: 385.6 bits (989), Expect = 2.0e-103 Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0
BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: D5I3A6 (NADH-ubiquinone oxidoreductase chain 6 OS=Citrullus lanatus OX=3654 GN=nad6 PE=3 SV=1) HSP 1 Score: 385.6 bits (989), Expect = 2.0e-103 Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0
BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: A0A3G1SU34 (NADH-ubiquinone oxidoreductase chain 6 OS=Cynanchum wilfordii OX=228709 GN=nad6 PE=3 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 1.1e-101 Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0
BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: A0A481X4G7 (NADH-ubiquinone oxidoreductase chain 6 OS=Cynanchum auriculatum OX=157409 GN=nad6 PE=3 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 1.1e-101 Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0
BLAST of Lsi01G010980 vs. NCBI nr
Match: MBA0757956.1 (hypothetical protein [Gossypium trilobum]) HSP 1 Score: 411.4 bits (1056), Expect = 7.1e-111 Identity = 222/236 (94.07%), Postives = 226/236 (95.76%), Query Frame = 0
BLAST of Lsi01G010980 vs. NCBI nr
Match: YP_003587236.1 (NADH dehydrogenase subunit 6 [Citrullus lanatus] >YP_009913621.1 NADH dehydrogenase subunit 6 [Luffa acutangula] >ACV96641.1 NADH dehydrogenase subunit 6 [Citrullus lanatus] >QLJ93016.1 NADH dehydrogenase subunit 6 [Luffa acutangula]) HSP 1 Score: 385.6 bits (989), Expect = 4.1e-103 Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0
BLAST of Lsi01G010980 vs. NCBI nr
Match: WP_131747054.1 (NADH-quinone oxidoreductase subunit J [Candidatus Frankia meridionalis]) HSP 1 Score: 380.9 bits (977), Expect = 1.0e-101 Identity = 201/205 (98.05%), Postives = 202/205 (98.54%), Query Frame = 0
BLAST of Lsi01G010980 vs. NCBI nr
Match: QDH82081.1 (NADH dehydrogenase subunit 6 [Broussonetia luzonica] >QDH82106.1 NADH dehydrogenase subunit 6 [Broussonetia monoica] >QDH82131.1 NADH dehydrogenase subunit 6 [Trophis scandens] >QDH82155.1 NADH dehydrogenase subunit 6 [Broussonetia kurzii] >QDH82204.1 NADH dehydrogenase subunit 6 [Broussonetia papyrifera] >QWQ49880.1 NADH dehydrogenase subunit 6 [Zelkova schneideriana]) HSP 1 Score: 380.2 bits (975), Expect = 1.7e-101 Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0
BLAST of Lsi01G010980 vs. NCBI nr
Match: YP_009041169.1 (NADH dehydrogenase subunit 6 [Rhazya stricta] >YP_009578129.1 NADH dehydrogenase subunit 6 [Cynanchum auriculatum] >AXT16586.1 Nad6 [Cynanchum wilfordii] >QJD13508.1 NADH dehydrogenase subunit 6 [Catharanthus roseus] >AIB08816.1 NADH dehydrogenase subunit 6 [Rhazya stricta] >AXT16605.1 Nad6 [Cynanchum wilfordii] >QBK32766.1 NADH dehydrogenase subunit 6 [Cynanchum auriculatum]) HSP 1 Score: 379.8 bits (974), Expect = 2.3e-101 Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0
BLAST of Lsi01G010980 vs. TAIR 10
Match: ATMG00270.1 (NADH dehydrogenase 6 ) HSP 1 Score: 378.6 bits (971), Expect = 4.7e-105 Identity = 199/205 (97.07%), Postives = 202/205 (98.54%), Query Frame = 0
BLAST of Lsi01G010980 vs. TAIR 10
Match: ATMG00060.1 (NADH dehydrogenase subunit 5C ) HSP 1 Score: 77.0 bits (188), Expect = 2.9e-14 Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0
BLAST of Lsi01G010980 vs. TAIR 10
Match: ATMG00513.1 (NADH dehydrogenase 5A ) HSP 1 Score: 77.0 bits (188), Expect = 2.9e-14 Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0
BLAST of Lsi01G010980 vs. TAIR 10
Match: ATMG00665.1 (NADH dehydrogenase 5B ) HSP 1 Score: 77.0 bits (188), Expect = 2.9e-14 Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0
BLAST of Lsi01G010980 vs. TAIR 10
Match: AT2G07718.1 (Cytochrome b/b6 protein ) HSP 1 Score: 59.3 bits (142), Expect = 6.3e-09 Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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