Lsi01G010980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G010980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 6
Locationchr01: 9010888 .. 9012164 (+)
RNA-Seq ExpressionLsi01G010980
SyntenyLsi01G010980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTAAAGGGAGGATATTAGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCTGGATCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGCAATGTTACTTGGTTTAACTCTATTTGTGACCTTTTCTCGTATGTGGGACTCTCTATCTTCTTGGGTAGATAATCGATCGTCTTTCATTTTGATAGTGAGTCGTTTTTATAATAATAAGTAAAGTCAAGAATAATAATCAAACTGGAGGAGCGAAGCAGCTCGACCGATAGGGAAAGGAGCGAAGCAGGATGGCTTGGTAAGCAAGCAACCTGTTATGTAGGCGCCAACTCCAAGTTCTTTCTCTTCTTTCTTTTTGATTTCGGGTTTCTTTCTTTTTTCAGGGGCCCAGAACGCTAAAAGGTGGGGGAGAAGCAAGCCGAACCTCTGATCGACCTGGAAACATCACAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGTAAGTAACTCAGCGAGTGCTTTCTAAGAAGGGCTTGACTTGGAAGAAGAAAATGAAATACGAACAACCGCGCTGGTCGTAATAGATCGACTTTCATGCTAGTTCTTGCTCCAGCATGAAAGTTCCATTTCAGGGAAGGACGACGTACCATGATACTTTCAGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTGCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCAGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATGTTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGGTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTATTTCTTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAA

mRNA sequence

ATGTGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCTGGATCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGCAATGTTACTTGGTTTAACTCTATTTGTGACCTTTTCTCGTATGTGGGACTCTCTATCTTCTTGGGTAGATAATCGATCGTCTTTCATTTTGATAGGGCCCAGAACGCTAAAAGGTGGGGGAGAAGCAAGCCGAACCTCTGATCGACCTGGAAACATCACAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGGAAGGACGACGTACCATGATACTTTCAGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTGCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCAGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATGTTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGGTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTATTTCTTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAA

Coding sequence (CDS)

ATGTGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCTGGATCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGCAATGTTACTTGGTTTAACTCTATTTGTGACCTTTTCTCGTATGTGGGACTCTCTATCTTCTTGGGTAGATAATCGATCGTCTTTCATTTTGATAGGGCCCAGAACGCTAAAAGGTGGGGGAGAAGCAAGCCGAACCTCTGATCGACCTGGAAACATCACAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGGAAGGACGACGTACCATGATACTTTCAGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTGCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCAGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATGTTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGGTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTATTTCTTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAA

Protein sequence

MWGSSEWRFPCREPDEGRPSRLDRRAGISRPYYHYAFAMLLGLTLFVTFSRMWDSLSSWVDNRSSFILIGPRTLKGGGEASRTSDRPGNITNSRRRERFEIPEGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAISFRRTIMRRTTDPLTIY
Homology
BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: P60498 (NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=2 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 6.6e-104
Identity = 199/205 (97.07%), Postives = 202/205 (98.54%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+T+GLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLV SLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: P60497 (NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE=1 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.3e-96
Identity = 192/205 (93.66%), Postives = 196/205 (95.61%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSS ALVSGLMVVRAKNPVHSVLF I VF +T+GLLLLLGLDFFAMIF VV+IGA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAV FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNE+IPLLPTQRNTT
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYY VWFLV SLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: Q02500 (NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 6.7e-96
Identity = 189/211 (89.57%), Postives = 195/211 (92.42%), Query Frame = 0

Query: 98  RFEIPEGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFA 157
           +F    GRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPI VF +T+GLL+LLGLDF A
Sbjct: 9   KFHFKGGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSA 68

Query: 158 MIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETI 217
           MI PVVHIGAIAVSFLFVVMMF+IQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETI
Sbjct: 69  MISPVVHIGAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETI 128

Query: 218 PLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLT 277
           PLLPT RNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLT
Sbjct: 129 PLLPTHRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLT 188

Query: 278 MHRTTKVKRQDVFRRNAISFRRTIMRRTTDP 309
           MHRTTKVKRQDVFRRNA+  R  IM RT  P
Sbjct: 189 MHRTTKVKRQDVFRRNALDSRSHIMNRTISP 219

BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: P26850 (NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 PE=2 SV=2)

HSP 1 Score: 256.9 bits (655), Expect = 2.9e-67
Identity = 141/187 (75.40%), Postives = 160/187 (85.56%), Query Frame = 0

Query: 117 ALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 176
           ALVSG MV+RAKNPVHSVLF I VF NT+GLL+LLGLDFFAMIF VV++GAIAV FLFVV
Sbjct: 11  ALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGAIAVLFLFVV 70

Query: 177 MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAG 236
           MM HI+I EIHE VLRYLPV GIIGLIF  E+F ++DN+ IP+LPT+ + T L YTVYAG
Sbjct: 71  MMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSATYLTYTVYAG 130

Query: 237 KVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIS 296
           K+ SWTNLETLGNLLYT Y   FLVSSLILLVA+IGAIVLTMH+TTKVKRQDVF +NAI 
Sbjct: 131 KIHSWTNLETLGNLLYTTYFFLFLVSSLILLVALIGAIVLTMHKTTKVKRQDVFIQNAID 190

Query: 297 FRRTIMR 304
           F+ TI +
Sbjct: 191 FQNTIKK 197

BLAST of Lsi01G010980 vs. ExPASy Swiss-Prot
Match: Q37626 (NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.1e-45
Identity = 106/199 (53.27%), Postives = 141/199 (70.85%), Query Frame = 0

Query: 112 VLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGAIAVS 171
           + SS  L+SG +V++A+NPVHSVLF + VF N AGLL+LLGLDFFA+IF VV++GAIAV 
Sbjct: 7   IFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVGAIAVL 66

Query: 172 FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRY 231
           FLFVVMM +I+I EI E+ LRYLPV G++G++F +E+  ++DN+ IPLL      T+L  
Sbjct: 67  FLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDIENTALLA 126

Query: 232 TVYAGKVRSWT-------NLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKV 291
                    W         ++ LG+LLYTYY  +FLV+SLILLVAMIGAIVLTM +  ++
Sbjct: 127 NYNQLSFIDWRMYLSTSHTIDALGSLLYTYYFYFFLVASLILLVAMIGAIVLTMQKGIRI 186

Query: 292 KRQDVFRRNAISFRRTIMR 304
           KRQ VF +N   F +TI +
Sbjct: 187 KRQQVFLQNTRDFAKTIRK 205

BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: A0A7J9DB23 (Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_020999 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 3.4e-111
Identity = 222/236 (94.07%), Postives = 226/236 (95.76%), Query Frame = 0

Query: 77  GGEASRTSDRPGNITNSRRRERFEIPEGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLF 136
           GGEASRTSDRP +I NSRRRERFEIPEGRRTMILSVLSSPALVSGLMV RAKNPVHSVLF
Sbjct: 29  GGEASRTSDRPRHIKNSRRRERFEIPEGRRTMILSVLSSPALVSGLMVARAKNPVHSVLF 88

Query: 137 PIPVFRNTAGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPV 196
           PI VFR+T+GLLLLLGLDF AMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPV
Sbjct: 89  PILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPV 148

Query: 197 SGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYS 256
           SGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYA KVRSWTNLETLGNLLYTYYS
Sbjct: 149 SGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAVKVRSWTNLETLGNLLYTYYS 208

Query: 257 VWFLVSSLILLVAMIGAIVLTMHRTT--KVKRQDVFRRNAISFRRTIMRRTTDPLT 311
           VWFLV SLILLVAMIGAIVLTMHRTT   VKRQDVFRRNAISFRRTIMRRTTDP+T
Sbjct: 209 VWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAISFRRTIMRRTTDPIT 264

BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: A0A7D5Y436 (NADH-ubiquinone oxidoreductase chain 6 OS=Luffa acutangula OX=56866 GN=nad6 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 2.0e-103
Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNT+GLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: D5I3A6 (NADH-ubiquinone oxidoreductase chain 6 OS=Citrullus lanatus OX=3654 GN=nad6 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 2.0e-103
Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNT+GLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: A0A3G1SU34 (NADH-ubiquinone oxidoreductase chain 6 OS=Cynanchum wilfordii OX=228709 GN=nad6 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 1.1e-101
Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNT+GLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAV FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNE+IPLLPTQRNTT
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLV SLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. ExPASy TrEMBL
Match: A0A481X4G7 (NADH-ubiquinone oxidoreductase chain 6 OS=Cynanchum auriculatum OX=157409 GN=nad6 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 1.1e-101
Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNT+GLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAV FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNE+IPLLPTQRNTT
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLV SLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. NCBI nr
Match: MBA0757956.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 411.4 bits (1056), Expect = 7.1e-111
Identity = 222/236 (94.07%), Postives = 226/236 (95.76%), Query Frame = 0

Query: 77  GGEASRTSDRPGNITNSRRRERFEIPEGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLF 136
           GGEASRTSDRP +I NSRRRERFEIPEGRRTMILSVLSSPALVSGLMV RAKNPVHSVLF
Sbjct: 29  GGEASRTSDRPRHIKNSRRRERFEIPEGRRTMILSVLSSPALVSGLMVARAKNPVHSVLF 88

Query: 137 PIPVFRNTAGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPV 196
           PI VFR+T+GLLLLLGLDF AMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPV
Sbjct: 89  PILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPV 148

Query: 197 SGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYS 256
           SGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYA KVRSWTNLETLGNLLYTYYS
Sbjct: 149 SGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAVKVRSWTNLETLGNLLYTYYS 208

Query: 257 VWFLVSSLILLVAMIGAIVLTMHRTT--KVKRQDVFRRNAISFRRTIMRRTTDPLT 311
           VWFLV SLILLVAMIGAIVLTMHRTT   VKRQDVFRRNAISFRRTIMRRTTDP+T
Sbjct: 209 VWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNAISFRRTIMRRTTDPIT 264

BLAST of Lsi01G010980 vs. NCBI nr
Match: YP_003587236.1 (NADH dehydrogenase subunit 6 [Citrullus lanatus] >YP_009913621.1 NADH dehydrogenase subunit 6 [Luffa acutangula] >ACV96641.1 NADH dehydrogenase subunit 6 [Citrullus lanatus] >QLJ93016.1 NADH dehydrogenase subunit 6 [Luffa acutangula])

HSP 1 Score: 385.6 bits (989), Expect = 4.1e-103
Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNT+GLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. NCBI nr
Match: WP_131747054.1 (NADH-quinone oxidoreductase subunit J [Candidatus Frankia meridionalis])

HSP 1 Score: 380.9 bits (977), Expect = 1.0e-101
Identity = 201/205 (98.05%), Postives = 202/205 (98.54%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFRNT+GLLLLLGLDF AMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. NCBI nr
Match: QDH82081.1 (NADH dehydrogenase subunit 6 [Broussonetia luzonica] >QDH82106.1 NADH dehydrogenase subunit 6 [Broussonetia monoica] >QDH82131.1 NADH dehydrogenase subunit 6 [Trophis scandens] >QDH82155.1 NADH dehydrogenase subunit 6 [Broussonetia kurzii] >QDH82204.1 NADH dehydrogenase subunit 6 [Broussonetia papyrifera] >QWQ49880.1 NADH dehydrogenase subunit 6 [Zelkova schneideriana])

HSP 1 Score: 380.2 bits (975), Expect = 1.7e-101
Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+T+GLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLV SLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. NCBI nr
Match: YP_009041169.1 (NADH dehydrogenase subunit 6 [Rhazya stricta] >YP_009578129.1 NADH dehydrogenase subunit 6 [Cynanchum auriculatum] >AXT16586.1 Nad6 [Cynanchum wilfordii] >QJD13508.1 NADH dehydrogenase subunit 6 [Catharanthus roseus] >AIB08816.1 NADH dehydrogenase subunit 6 [Rhazya stricta] >AXT16605.1 Nad6 [Cynanchum wilfordii] >QBK32766.1 NADH dehydrogenase subunit 6 [Cynanchum auriculatum])

HSP 1 Score: 379.8 bits (974), Expect = 2.3e-101
Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNT+GLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAV FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNE+IPLLPTQRNTT
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLV SLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. TAIR 10
Match: ATMG00270.1 (NADH dehydrogenase 6 )

HSP 1 Score: 378.6 bits (971), Expect = 4.7e-105
Identity = 199/205 (97.07%), Postives = 202/205 (98.54%), Query Frame = 0

Query: 108 MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIGA 167
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+T+GLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 168 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 227
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 228 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 287
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLV SLILLVAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 288 DVFRRNAISFRRTIMRRTTDPLTIY 313
           DVFRRNAI FRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

BLAST of Lsi01G010980 vs. TAIR 10
Match: ATMG00060.1 (NADH dehydrogenase subunit 5C )

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 33  YHYAFAMLLGLTLFVTFSRMWDSLSSWVDNRSSFILI 70
           YHYAFAMLLG TLFVTFSRMWDSLSSWVDNRSSFILI
Sbjct: 622 YHYAFAMLLGSTLFVTFSRMWDSLSSWVDNRSSFILI 658

BLAST of Lsi01G010980 vs. TAIR 10
Match: ATMG00513.1 (NADH dehydrogenase 5A )

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 33  YHYAFAMLLGLTLFVTFSRMWDSLSSWVDNRSSFILI 70
           YHYAFAMLLG TLFVTFSRMWDSLSSWVDNRSSFILI
Sbjct: 622 YHYAFAMLLGSTLFVTFSRMWDSLSSWVDNRSSFILI 658

BLAST of Lsi01G010980 vs. TAIR 10
Match: ATMG00665.1 (NADH dehydrogenase 5B )

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 33  YHYAFAMLLGLTLFVTFSRMWDSLSSWVDNRSSFILI 70
           YHYAFAMLLG TLFVTFSRMWDSLSSWVDNRSSFILI
Sbjct: 622 YHYAFAMLLGSTLFVTFSRMWDSLSSWVDNRSSFILI 658

BLAST of Lsi01G010980 vs. TAIR 10
Match: AT2G07718.1 (Cytochrome b/b6 protein )

HSP 1 Score: 59.3 bits (142), Expect = 6.3e-09
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 107 TMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTAGLLLLLGLDFFAMIFPVVHIG 166
           TMILSVLSSPALVSGLMV RAKN VHSVLFPIP+F +   L       +F  +  + H+ 
Sbjct: 44  TMILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHLA 103

Query: 167 AIAVSFLFVVMMF 180
                 LF++  F
Sbjct: 104 TKCQLLLFLISHF 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P604986.6e-10497.07NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=... [more]
P604971.3e-9693.66NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE... [more]
Q025006.7e-9689.57NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 ... [more]
P268502.9e-6775.40NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 P... [more]
Q376264.1e-4553.27NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 ... [more]
Match NameE-valueIdentityDescription
A0A7J9DB233.4e-11194.07Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_02099... [more]
A0A7D5Y4362.0e-10399.02NADH-ubiquinone oxidoreductase chain 6 OS=Luffa acutangula OX=56866 GN=nad6 PE=3... [more]
D5I3A62.0e-10399.02NADH-ubiquinone oxidoreductase chain 6 OS=Citrullus lanatus OX=3654 GN=nad6 PE=3... [more]
A0A3G1SU341.1e-10197.56NADH-ubiquinone oxidoreductase chain 6 OS=Cynanchum wilfordii OX=228709 GN=nad6 ... [more]
A0A481X4G71.1e-10197.56NADH-ubiquinone oxidoreductase chain 6 OS=Cynanchum auriculatum OX=157409 GN=nad... [more]
Match NameE-valueIdentityDescription
MBA0757956.17.1e-11194.07hypothetical protein [Gossypium trilobum][more]
YP_003587236.14.1e-10399.02NADH dehydrogenase subunit 6 [Citrullus lanatus] >YP_009913621.1 NADH dehydrogen... [more]
WP_131747054.11.0e-10198.05NADH-quinone oxidoreductase subunit J [Candidatus Frankia meridionalis][more]
QDH82081.11.7e-10197.56NADH dehydrogenase subunit 6 [Broussonetia luzonica] >QDH82106.1 NADH dehydrogen... [more]
YP_009041169.12.3e-10197.56NADH dehydrogenase subunit 6 [Rhazya stricta] >YP_009578129.1 NADH dehydrogenase... [more]
Match NameE-valueIdentityDescription
ATMG00270.14.7e-10597.07NADH dehydrogenase 6 [more]
ATMG00060.12.9e-1497.30NADH dehydrogenase subunit 5C [more]
ATMG00513.12.9e-1497.30NADH dehydrogenase 5A [more]
ATMG00665.12.9e-1497.30NADH dehydrogenase 5B [more]
AT2G07718.16.3e-0952.05Cytochrome b/b6 protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042106NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJGENE3D1.20.120.1200coord: 107..278
e-value: 3.6E-38
score: 132.6
IPR001457NADH:ubiquinone/plastoquinone oxidoreductase, chain 6PFAMPF00499Oxidored_q3coord: 121..276
e-value: 1.4E-30
score: 105.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR33269NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6coord: 103..302
NoneNo IPR availablePANTHERPTHR33269:SF5NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6coord: 103..302

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G010980.1Lsi01G010980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0070469 respirasome
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity