Lsi01G010970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G010970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr01: 9008128 .. 9008794 (-)
RNA-Seq Expression	Lsi01G010970
Synteny	Lsi01G010970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGACCTCGTGCTCTTCAAGAAATGAAGGCAAAGGCCCCCCCGAGCCCGAGTTTACCGGGGATCTTAGAGGGGCACCCAATCAAGGCCGCCACCCTCGCCCTTTAGAGATAGGGGCGCAACAAAAAGTCTTCAAAAAAAGGCGCCGGAGGCCTCAAACTCATCCGGAGTTGGAGAATGAAAAAAAACACTTTCTCAACAAGAATGCATCAACAAAACTGCCCTTCCATATAGATCGTCGTCGCATGAACTTTGTCAAGAAATTCCGGGACTTCCTATTGTGTTGAGAGTTCTCTTTTCTTTCTAGACCGGACCCTTTTTTAGACCGTCTCCTGAAACACCTGCTTATCCCGCATGTGCTTTCGGAGCCCCCCACTCATTCAATCACTTGCTTGTGATTGCAGCCATTCCCCGAAAAGGGAGAGACGAGGGAATCGTCTGCTCCCGTTTATGTGACGAACCGAACAACCATCGTTAGGTCCCGAATTCAGCGAACCACCGGATCCAGACCAAGATCTGATCTCCATTACGTGGTACGATATATCTATCGATCCAAAGAACTGACTTTCAGTTGTAAGTCATCCATTCTGCTCCTATCTAAAGTGATGCTAGGTTGCTTCACCTTCACCCTTCACAAAGACAGGTGCAGGTGCGCTTCGCTCGGCCACA

mRNA sequence

GTGACCTCGTGCTCTTCAAGAAATGAAGGCAAAGGCCCCCCCGAGCCCGAGTTTACCGGGGATCTTAGAGGGGCACCCAATCAAGGCCGCCACCCTCGCCCTTTAGAGATAGGGGCGCAACAAAAAGTCTTCAAAAAAAGGCGCCGGAGGCCTCAAACTCATCCGGAGTTGGAGAATGAAAAAAAACACTTTCTCAACAAGAATGCATCAACAAAACTGCCCTTCCATATAGATCGTCGTCGCATGAACTTTGTCAAGAAATTCCGGGACTTCCTATTACCGGACCCTTTTTTAGACCGTCTCCTGAAACACCTGCTTATCCCGCATCCATTCCCCGAAAAGGGAGAGACGAGGGAATCGTCTGCTCCCGTTTATGTGACGAACCGAACAACCATCGTTAGGTCCCGAATTCAGCGAACCACCGGATCCAGACCAAGATCTGATCTCCATTACGTGGTTGCTTCACCTTCACCCTTCACAAAGACAGGTGCAGGTGCGCTTCGCTCGGCCACA

Coding sequence (CDS)

GTGACCTCGTGCTCTTCAAGAAATGAAGGCAAAGGCCCCCCCGAGCCCGAGTTTACCGGGGATCTTAGAGGGGCACCCAATCAAGGCCGCCACCCTCGCCCTTTAGAGATAGGGGCGCAACAAAAAGTCTTCAAAAAAAGGCGCCGGAGGCCTCAAACTCATCCGGAGTTGGAGAATGAAAAAAAACACTTTCTCAACAAGAATGCATCAACAAAACTGCCCTTCCATATAGATCGTCGTCGCATGAACTTTGTCAAGAAATTCCGGGACTTCCTATTACCGGACCCTTTTTTAGACCGTCTCCTGAAACACCTGCTTATCCCGCATCCATTCCCCGAAAAGGGAGAGACGAGGGAATCGTCTGCTCCCGTTTATGTGACGAACCGAACAACCATCGTTAGGTCCCGAATTCAGCGAACCACCGGATCCAGACCAAGATCTGATCTCCATTACGTGGTTGCTTCACCTTCACCCTTCACAAAGACAGGTGCAGGTGCGCTTCGCTCGGCCACA

Protein sequence

VTSCSSRNEGKGPPEPEFTGDLRGAPNQGRHPRPLEIGAQQKVFKKRRRRPQTHPELENEKKHFLNKNASTKLPFHIDRRRMNFVKKFRDFLLPDPFLDRLLKHLLIPHPFPEKGETRESSAPVYVTNRTTIVRSRIQRTTGSRPRSDLHYVVASPSPFTKTGAGALRSAT

Homology

[Close]

BLAST of Lsi01G010970 vs. ExPASy TrEMBL
Match: A0A2Z6MA99 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_335530 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-04
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 113 EKGETRESSAPVYVTNRTTIVRSRIQRTTGSRPRSDLHYVV 154
           +KGETRESSAPV+VTNRT++   RI RTTG RPRS L   +
Sbjct: 99  KKGETRESSAPVHVTNRTSLGPDRILRTTGPRPRSPLRRTI 139

[Close]

BLAST of Lsi01G010970 vs. NCBI nr
Match: GAU19268.1 (hypothetical protein TSUD_335530 [Trifolium subterraneum])

HSP 1 Score: 55.5 bits (132), Expect = 5.4e-04
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 113 EKGETRESSAPVYVTNRTTIVRSRIQRTTGSRPRSDLHYVV 154
           +KGETRESSAPV+VTNRT++   RI RTTG RPRS L   +
Sbjct: 99  KKGETRESSAPVHVTNRTSLGPDRILRTTGPRPRSPLRRTI 139

The following BLAST results are available for this feature:

BLAST of Lsi01G010970 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G010970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2Z6MA99	2.6e-04	65.85	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_335530 PE=4 SV...	[more]

BLAST of Lsi01G010970 vs. NCBI nr


Match Name	E-value	Identity	Description
GAU19268.1	5.4e-04	65.85	hypothetical protein TSUD_335530 [Trifolium subterraneum]	[more]

BLAST of Lsi01G010970 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G010970.1	Lsi01G010970.1	mRNA