Lsi01G010900 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G010900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NADH-quinone oxidoreductase subunit D
Location	chr01: 8999869 .. 9000629 (+)
RNA-Seq Expression	Lsi01G010900
Synteny	Lsi01G010900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCTCCCGCGCATACCCCGGGGTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGTAACCCGCCTGCTGTCTCATTCAACTACATTTGTTCCTATAATCCATAGCCTAACAGAACGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGAGCATAGCATAGGCGGGAAAGGGAGCCCGGACGGTGGAAGAGCCAGGGGAGGCCGGGTCATTTGACGGAAATGGAAGGCTTTTCCCCTATTAGAAAAGGCCCTATGAAGTAAAGGGAAGTGCATCAATTCTTGGAAAAAGAGGGAGCGAGCCTATAGAAAAAATCTAAGAAAGTCAATTCAATGAATAGATCTCGAGTCAACGGTACGACAGACAGCGCTGCCTACACGCGAATTAGCTTCCGAGGTCAAGCAGTCTCAATTTCACTACAGGATTGATTTGCGAATGAATGCTGGGCTGGGCCACCTCGAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGGTCGAAAGACCGGCCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTATTCTGATCGTTCAGAGGGCGATCGCGGAGTCACTGAATGA

mRNA sequence

ATGAGCCCTAACAGAACGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGAGCATAGCATAGGCGGGAAAGGGAGCCCGGACGGTGGAAGAGCCAGGGGAGGCCGGACAGCGCTGCCTACACGCGAATTAGCTTCCGAGGTCAAGCAGTCTCAATTTCACTACAGGATTGATTTGCGAATGAATGCTGGGCTGGGCCACCTCGAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGGGGATCTGGTCGAAAGACCGGCCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTATTCTGATCGTTCAGAGGGCGATCGCGGAGTCACTGAATGA

Coding sequence (CDS)

ATGAGCCCTAACAGAACGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGAGCATAGCATAGGCGGGAAAGGGAGCCCGGACGGTGGAAGAGCCAGGGGAGGCCGGACAGCGCTGCCTACACGCGAATTAGCTTCCGAGGTCAAGCAGTCTCAATTTCACTACAGGATTGATTTGCGAATGAATGCTGGGCTGGGCCACCTCGAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGGGGATCTGGTCGAAAGACCGGCCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTATTCTGATCGTTCAGAGGGCGATCGCGGAGTCACTGAATGA

Protein sequence

MSPNRTQQRGATCPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGGKGSPDGGRARGGRTALPTRELASEVKQSQFHYRIDLRMNAGLGHLEWREPHAGRPARTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE

Homology

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BLAST of Lsi01G010900 vs. ExPASy Swiss-Prot
Match: Q36450 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX=4096 GN=NAD7 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.8e-06
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 108 GDLVER--PAGAHPTRGTEKLIEYKTYLQALPYSDRSE 144
           G++VER  P      RGTEKLIEYKTYLQALPYSDRSE
Sbjct: 34  GEVVERAEPHIGLLQRGTEKLIEYKTYLQALPYSDRSE 71

[Close]

BLAST of Lsi01G010900 vs. ExPASy Swiss-Prot
Match: P93306 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX=3702 GN=NAD7 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 9.9e-05
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 108 GDLVER--PAGAHPTRGTEKLIEYKTYLQALPYSDRSE 144
           G++VER  P      RGTEKLIEYKTYLQALPY DRS+
Sbjct: 34  GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRSD 71

[Close]

BLAST of Lsi01G010900 vs. ExPASy Swiss-Prot
Match: A5VAM0 (NADH-quinone oxidoreductase subunit D OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) OX=392499 GN=nuoD PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 108 GDLVER--PAGAHPTRGTEKLIEYKTYLQALPYSDR 142
           G++VER  P      RGTEKLIEYKTYLQALPY DR
Sbjct: 45  GEIVERVDPHVGLLHRGTEKLIEYKTYLQALPYFDR 80

[Close]

BLAST of Lsi01G010900 vs. ExPASy Swiss-Prot
Match: Q1GTK0 (NADH-quinone oxidoreductase subunit D OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) OX=317655 GN=nuoD PE=3 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 3.8e-04
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 108 GDLVER--PAGAHPTRGTEKLIEYKTYLQALPYSDR 142
           G+++ER  P      RGTEKLIEYKTYLQALPY DR
Sbjct: 44  GEIIERVDPHVGLLHRGTEKLIEYKTYLQALPYFDR 79

[Close]

BLAST of Lsi01G010900 vs. ExPASy Swiss-Prot
Match: Q5PAR3 (NADH-quinone oxidoreductase subunit D OS=Anaplasma marginale (strain St. Maries) OX=234826 GN=nuoD PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.9e-04
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 107 TGDLVER--PAGAHPTRGTEKLIEYKTYLQALPYSDR 142
           +G+++ER  P      RGTEKLIEYKTYLQALPY DR
Sbjct: 37  SGEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDR 73

[Close]

BLAST of Lsi01G010900 vs. ExPASy TrEMBL
Match: A0A2H5QV90 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_265020 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 83  IDLRMNAGLGHLEWREPHAGRPARTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSDRS 142
           +DLRMNAGL HLEWREPHAGRPARTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSD+S
Sbjct: 228 LDLRMNAGLDHLEWREPHAGRPARTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSDQS 287

[Close]

BLAST of Lsi01G010900 vs. ExPASy TrEMBL
Match: A0A0E0DVR6 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-24
Identity = 59/67 (88.06%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 84  DLRMNAGLGHLEWREPHAGRPARTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSDRSE 143
           DLRMNA LGHL+WREPHAGRPART     RPAGAHPTRGTEKLIEYKTYLQALPY DRSE
Sbjct: 23  DLRMNARLGHLKWREPHAGRPARTVFRGIRPAGAHPTRGTEKLIEYKTYLQALPYFDRSE 82

Query: 144 GDRGVTE 151
           GDRGVTE
Sbjct: 83  GDRGVTE 89

[Close]

BLAST of Lsi01G010900 vs. ExPASy TrEMBL
Match: A0A453J299 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.4e-23
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 87  MNAGLGHLEWREPHAGRPARTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSDRSEGDR 146
           MNAGLGHL+WREPHAGRPART     RPAGAHPTRGTEKLIEYKTYLQALPY DR EGDR
Sbjct: 1   MNAGLGHLKWREPHAGRPARTVFRGIRPAGAHPTRGTEKLIEYKTYLQALPYFDRLEGDR 60

Query: 147 GVTE 151
           GVTE
Sbjct: 61  GVTE 64

[Close]

BLAST of Lsi01G010900 vs. ExPASy TrEMBL
Match: A0A6A5LBY9 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00002353 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.4e-22
Identity = 58/80 (72.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 3   PNRTQQRGATCPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGGKGSPDGGRARGGR 62
           PNRTQQRG T PYSQRGGWHYWQRPSGENAAGAKRGRP PGEHSIG KGS DGGRARGG 
Sbjct: 413 PNRTQQRGTTRPYSQRGGWHYWQRPSGENAAGAKRGRPVPGEHSIGRKGSLDGGRARGGP 472

Query: 63  TALPTRELASEVKQSQFHYR 83
             L   E  S +++     R
Sbjct: 473 GHLTEMEGFSPIREGPLKSR 492

[Close]

BLAST of Lsi01G010900 vs. ExPASy TrEMBL
Match: A0A5N6L0Z7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025294 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 6   TQQRGATCPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGGKGSPDGGRARGGR 63
           TQQRG T PYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIG KGSPDGGRARGGR
Sbjct: 241 TQQRGTTRPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGRKGSPDGGRARGGR 297

[Close]

BLAST of Lsi01G010900 vs. NCBI nr
Match: GAY68548.1 (hypothetical protein CUMW_265020 [Citrus unshiu])

HSP 1 Score: 124.4 bits (311), Expect = 8.3e-25
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 83  IDLRMNAGLGHLEWREPHAGRPARTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSDRS 142
           +DLRMNAGL HLEWREPHAGRPARTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSD+S
Sbjct: 228 LDLRMNAGLDHLEWREPHAGRPARTGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSDQS 287

[Close]

BLAST of Lsi01G010900 vs. NCBI nr
Match: KAF1856945.1 (hypothetical protein Lal_00002353 [Lupinus albus])

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-21
Identity = 58/80 (72.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 3   PNRTQQRGATCPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGGKGSPDGGRARGGR 62
           PNRTQQRG T PYSQRGGWHYWQRPSGENAAGAKRGRP PGEHSIG KGS DGGRARGG 
Sbjct: 413 PNRTQQRGTTRPYSQRGGWHYWQRPSGENAAGAKRGRPVPGEHSIGRKGSLDGGRARGGP 472

Query: 63  TALPTRELASEVKQSQFHYR 83
             L   E  S +++     R
Sbjct: 473 GHLTEMEGFSPIREGPLKSR 492

[Close]

BLAST of Lsi01G010900 vs. NCBI nr
Match: KAB8468460.1 (hypothetical protein FH972_025294 [Carpinus fangiana])

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-21
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 6   TQQRGATCPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGGKGSPDGGRARGGR 63
           TQQRG T PYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIG KGSPDGGRARGGR
Sbjct: 241 TQQRGTTRPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGRKGSPDGGRARGGR 297

[Close]

BLAST of Lsi01G010900 vs. NCBI nr
Match: KAB1219912.1 (hypothetical protein CJ030_MR3G009554 [Morella rubra])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-20
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 6   TQQRGATCPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGGKGSPDGGRARGGR 63
           TQQRG T PYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIG KG PDGGRARGGR
Sbjct: 51  TQQRGTTRPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGRKGGPDGGRARGGR 107

[Close]

BLAST of Lsi01G010900 vs. NCBI nr
Match: GFS28444.1 (hypothetical protein Acr_00g0001890 [Actinidia rufa] >GFS28603.1 hypothetical protein Acr_00g0002750 [Actinidia rufa] >GFS28769.1 hypothetical protein Acr_00g0003820 [Actinidia rufa] >GFS28776.1 hypothetical protein Acr_00g0003870 [Actinidia rufa])

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-20
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 6   TQQRGATCPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIGGKGSPDGGRARGGR 63
           TQQRG T PYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSI  KGSPDGGRARGGR
Sbjct: 66  TQQRGTTRPYSQRGGWHYWQRPSGENAAGAKRGRPAPGEHSIVRKGSPDGGRARGGR 122

[Close]

BLAST of Lsi01G010900 vs. TAIR 10
Match: ATMG00510.1 (NADH dehydrogenase subunit 7 )

HSP 1 Score: 51.2 bits (121), Expect = 8.3e-07
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 108 GDLVER--PAGAHPTRGTEKLIEYKTYLQALPYSDRSE 144
           G++VER  P      RGTEKLIEYKTYLQALPYSDRS+
Sbjct: 34  GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSD 71

The following BLAST results are available for this feature:

BLAST of Lsi01G010900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q36450	6.8e-06	73.68	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX...	[more]
P93306	9.9e-05	68.42	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX...	[more]
A5VAM0	2.9e-04	69.44	NADH-quinone oxidoreductase subunit D OS=Sphingomonas wittichii (strain RW1 / DS...	[more]
Q1GTK0	3.8e-04	66.67	NADH-quinone oxidoreductase subunit D OS=Sphingopyxis alaskensis (strain DSM 135...	[more]
Q5PAR3	4.9e-04	64.86	NADH-quinone oxidoreductase subunit D OS=Anaplasma marginale (strain St. Maries)...	[more]

BLAST of Lsi01G010900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H5QV90	4.0e-25	95.00	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_265020 PE=4 SV=1	[more]
A0A0E0DVR6	2.0e-24	88.06	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
A0A453J299	6.4e-23	87.50	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]
A0A6A5LBY9	5.4e-22	72.50	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00002353 PE=4 SV=1	[more]
A0A5N6L0Z7	2.1e-21	94.74	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025294 PE=4 SV=1	[more]

BLAST of Lsi01G010900 vs. NCBI nr


Match Name	E-value	Identity	Description
GAY68548.1	8.3e-25	95.00	hypothetical protein CUMW_265020 [Citrus unshiu]	[more]
KAF1856945.1	1.1e-21	72.50	hypothetical protein Lal_00002353 [Lupinus albus]	[more]
KAB8468460.1	4.3e-21	94.74	hypothetical protein FH972_025294 [Carpinus fangiana]	[more]
KAB1219912.1	1.2e-20	92.98	hypothetical protein CJ030_MR3G009554 [Morella rubra]	[more]
GFS28444.1	4.7e-20	92.98	hypothetical protein Acr_00g0001890 [Actinidia rufa] >GFS28603.1 hypothetical pr...	[more]

BLAST of Lsi01G010900 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00510.1	8.3e-07	71.05	NADH dehydrogenase subunit 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G010900.1	Lsi01G010900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044210	'de novo' CTP biosynthetic process
biological_process	GO:0006541	glutamine metabolic process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003883	CTP synthase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0048038	quinone binding