Lsi01G010890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G010890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	YMF19 domain-containing protein
Location	chr01: 8999549 .. 8999783 (+)
RNA-Seq Expression	Lsi01G010890
Synteny	Lsi01G010890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGGTTCCGTAGCGCGTCATGAGCACCGGGCTAAGGGGCGGTTGAGCTACTCAAGCGAACCGCCCTACCTTACTACAACATAG

mRNA sequence

ATGGTTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGGTTCCGTAGCGCGTCATGAGCACCGGGCTAAGGGGCGGTTGAGCTACTCAAGCGAACCGCCCTACCTTACTACAACATAG

Coding sequence (CDS)

ATGGTTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGGTTCCGTAGCGCGTCATGAGCACCGGGCTAAGGGGCGGTTGAGCTACTCAAGCGAACCGCCCTACCTTACTACAACATAG

Protein sequence

MVIGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLSYSSEPPYLTTT

Homology

[Close]

BLAST of Lsi01G010890 vs. ExPASy TrEMBL
Match: A0A5D3CE05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold79316G00010 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLS 62
           IGNERRSGGTCGT YWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGR  
Sbjct: 90  IGNERRSGGTCGTPYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRFF 149

Query: 63  YSSEPPYLTTT 74
           YSSEPPYLTTT
Sbjct: 150 YSSEPPYLTTT 160

[Close]

BLAST of Lsi01G010890 vs. ExPASy TrEMBL
Match: A0A5A7TS23 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45416G00010 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLS 62
           IGNERRSGGTCGT YWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGR  
Sbjct: 53  IGNERRSGGTCGTPYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRFF 112

Query: 63  YSSEPPYLTTT 74
           YSSEPPYLTTT
Sbjct: 113 YSSEPPYLTTT 123

[Close]

BLAST of Lsi01G010890 vs. ExPASy TrEMBL
Match: A0A5J4ZTU2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_012453 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLS 62
           IGNERRSGGTCGTTYWITPVRHEAADAES PMPLAMPCLVPRH GGSVARHEHRAKGRLS
Sbjct: 123 IGNERRSGGTCGTTYWITPVRHEAADAESTPMPLAMPCLVPRHSGGSVARHEHRAKGRLS 182

Query: 63  YSSEPPYLTTT 74
            SSEPPYLTTT
Sbjct: 183 NSSEPPYLTTT 193

[Close]

BLAST of Lsi01G010890 vs. ExPASy TrEMBL
Match: A0A5A7UAW0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00560 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.3e-32
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLS 62
           IGNERRSGG CGT YWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGR  
Sbjct: 153 IGNERRSGGMCGTPYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRFF 212

Query: 63  YSSEPPYLTTT 74
           YSSEPPYLTTT
Sbjct: 213 YSSEPPYLTTT 223

[Close]

BLAST of Lsi01G010890 vs. ExPASy TrEMBL
Match: A0A2G2XG03 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_04911 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.8e-29
Identity = 67/73 (91.78%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLV--PRHGGGSVARHEHRAKGR 62
           IGNERRSGGT GTTYWITPVRHEAADAESAPMPLAMPCLV  PRHGGGSVARHEHRAKGR
Sbjct: 293 IGNERRSGGTRGTTYWITPVRHEAADAESAPMPLAMPCLVPLPRHGGGSVARHEHRAKGR 352

Query: 63  LSYSSEPPYLTTT 74
           LS SSEPPYL  T
Sbjct: 353 LSNSSEPPYLIPT 365

[Close]

BLAST of Lsi01G010890 vs. NCBI nr
Match: KAF3961630.1 (hypothetical protein CMV_013772 [Castanea mollissima])

HSP 1 Score: 150.6 bits (379), Expect = 5.3e-33
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLS 62
           IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGS+ARHEHRAKGRLS
Sbjct: 58  IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSIARHEHRAKGRLS 117

Query: 63  YSSEPPYLTTT 74
            SSEPPYLTTT
Sbjct: 118 NSSEPPYLTTT 128

[Close]

BLAST of Lsi01G010890 vs. NCBI nr
Match: KAE8647117.1 (hypothetical protein Csa_021722 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLS 62
           IGNERRSGGTCGT YWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGR  
Sbjct: 30  IGNERRSGGTCGTPYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRFF 89

Query: 63  YSSEPPYLTTT 74
           YSSEPPYLTTT
Sbjct: 90  YSSEPPYLTTT 100

[Close]

BLAST of Lsi01G010890 vs. NCBI nr
Match: KAA0046212.1 (hypothetical protein E6C27_scaffold45416G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLS 62
           IGNERRSGGTCGT YWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGR  
Sbjct: 53  IGNERRSGGTCGTPYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRFF 112

Query: 63  YSSEPPYLTTT 74
           YSSEPPYLTTT
Sbjct: 113 YSSEPPYLTTT 123

[Close]

BLAST of Lsi01G010890 vs. NCBI nr
Match: TYK08579.1 (hypothetical protein E5676_scaffold79316G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLS 62
           IGNERRSGGTCGT YWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGR  
Sbjct: 90  IGNERRSGGTCGTPYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRFF 149

Query: 63  YSSEPPYLTTT 74
           YSSEPPYLTTT
Sbjct: 150 YSSEPPYLTTT 160

[Close]

BLAST of Lsi01G010890 vs. NCBI nr
Match: KAA8521780.1 (hypothetical protein F0562_012453 [Nyssa sinensis])

HSP 1 Score: 147.1 bits (370), Expect = 5.8e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 3   IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVARHEHRAKGRLS 62
           IGNERRSGGTCGTTYWITPVRHEAADAES PMPLAMPCLVPRH GGSVARHEHRAKGRLS
Sbjct: 123 IGNERRSGGTCGTTYWITPVRHEAADAESTPMPLAMPCLVPRHSGGSVARHEHRAKGRLS 182

Query: 63  YSSEPPYLTTT 74
            SSEPPYLTTT
Sbjct: 183 NSSEPPYLTTT 193

The following BLAST results are available for this feature:

BLAST of Lsi01G010890 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G010890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CE05	1.3e-32	95.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TS23	1.3e-32	95.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5J4ZTU2	2.8e-32	95.77	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_012453 PE=4 SV=1	[more]
A0A5A7UAW0	6.3e-32	94.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2G2XG03	3.8e-29	91.78	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_04911 PE=4 SV=1	[more]

BLAST of Lsi01G010890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3961630.1	5.3e-33	97.18	hypothetical protein CMV_013772 [Castanea mollissima]	[more]
KAE8647117.1	2.6e-32	95.77	hypothetical protein Csa_021722 [Cucumis sativus]	[more]
KAA0046212.1	2.6e-32	95.77	hypothetical protein E6C27_scaffold45416G00010 [Cucumis melo var. makuwa]	[more]
TYK08579.1	2.6e-32	95.77	hypothetical protein E5676_scaffold79316G00010 [Cucumis melo var. makuwa]	[more]
KAA8521780.1	5.8e-32	95.77	hypothetical protein F0562_012453 [Nyssa sinensis]	[more]

BLAST of Lsi01G010890 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G010890.1	Lsi01G010890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion