Lsi01G010870 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G010870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NADH dehydrogenase subunit 7
Location	chr01: 8991253 .. 8992847 (+)
RNA-Seq Expression	Lsi01G010870
Synteny	Lsi01G010870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGAAACTACCACGTTAGGTTTGGAGAGAGATGGGACCGGCAAGACCCAGCCAGATGCAAGCTTTTTCTTTCAATAGCCGGCCAAATGACTACAGGATCATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTTCTTCTACCTATACCGCAGTGGAAGCACCTAAAGGTGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCACATGCCAGCGGATGTGGTCACCATCATAGGTACTCAAGATATTGTGTCTGGAGAGGTAGATAGATAGGACTACTAGTTGCTCGATCAGGGCCCTAGCTTTATTGCGAGCCAAAAACCTCAGCGGATCCTATAAAGAGAAAGCCTCTCGGAGAAAGTTTTTGTCGCCGTTAAAGTCGAGAGAGAAGTCTCTAAAGCCGCTATGGTCTGGGCTCTCACTCACGTCGTCCGTCCTGGGGACTCTATTACGCTGCTCGCCCTATTAGCTAGCCGGCGGCAACCGTGGAAATTCATTAATTTCAGCCTGTCTCGGGTTCTCTATTGTACGGCGAAACTCGCTAATAATATATATATGTTTTTTCTCAGGAACCAGACCTACATGCACGAAGAAGAATATATATCTCTGGTCATATTCTTGTGTAACTTCTGTCGTCCCGTTCATTGTGGTTCCTCGGCCCTGCTAGCCATTTGCTTGCTCGAACTGTACACATTCAAAGAGGGGACAAGCTAAACAAGCAAGCCATCCAAGTTTATAGAGTCGGAAGTTCGAAAGAACTTTTAGGTTTCCCTGTGACTAACTTAGCACACTTCTGGTGGTAGCCATTGGGCTAAGTCTCCAAAAAGAGCCACTCACATATATAGATAGGCATTACAGAGGAGCTTCGCTTTCTGCTTCGGTTGGCGCGTTGCAGTAATGAAAAAAAGAATGAGATTAGTTCGGTCTTAAGTCTTTGGGTGAATTCATTTGGGTATCGAAGTTTTAGTTATTGCCATCCCTTGCTTGGCAGCGGTGAGCTTGGTAGTAGCATAGGTCGATCCTCGGGCAGTTTTTTCAGGGCTGGAGCTTGATTCCCACTCCCAGTAGTCTTTCTTCAGTAATTCGCTTGGAAAGTAGTCTTTCGTAAGCAGGAGCGTAGCGCTTCGCAAGTGAAGGTGCAGGATGTGCTTCTTCCCTTTATAGCGGCTTCTGTCATTTTCACATAAATGTTGTAATAAATCCTATCTCTACTTCTGCTAACGAACGCTAGAATTGGGATATCGAGAAAGAGGGTAGACCGTAGAGGGTTCAACAAAGAAAAGCAAGAAAACGTAAGCCCTTGTTTGGTTTGTATAGGCTGGGCTTACGTTTTTCAACTGCATCGTACCGTACGATGGGAGGGGTCCGTACCTCCTTTAGATATCTCGAGCCCCCGTGCTCCTAATGTCGAGCTAGAACGACAGCTACCGTGGAATCTGCGATCACACATGAGTACCTCGCCTTCCAAAAAAAGCGGCTGCTAA

mRNA sequence

ATGATGGGAAACTACCACGTTAGGTTTGGAGAGAGATGGGACCGGCAAGACCCAGCCAGATGCAAGCTTTTTCTTTCAATAGCCGGCCAAATGACTACAGGATCATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTTCTTCTACCTATACCGCAGTGGAAGCACCTAAAGGTGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCACATGCCAGCGGATGTGGTCACCATCATAGGCTGGGCTTACGTTTTTCAACTGCATCGTACCGTACGATGGGAGGGGTCCGTACCTCCTTTAGATATCTCGAGCCCCCGTGCTCCTAATGTCGAGCTAGAACGACAGCTACCGTGGAATCTGCGATCACACATGAGTACCTCGCCTTCCAAAAAAAGCGGCTGCTAA

Coding sequence (CDS)

ATGATGGGAAACTACCACGTTAGGTTTGGAGAGAGATGGGACCGGCAAGACCCAGCCAGATGCAAGCTTTTTCTTTCAATAGCCGGCCAAATGACTACAGGATCATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTTCTTCTACCTATACCGCAGTGGAAGCACCTAAAGGTGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCACATGCCAGCGGATGTGGTCACCATCATAGGCTGGGCTTACGTTTTTCAACTGCATCGTACCGTACGATGGGAGGGGTCCGTACCTCCTTTAGATATCTCGAGCCCCCGTGCTCCTAATGTCGAGCTAGAACGACAGCTACCGTGGAATCTGCGATCACACATGAGTACCTCGCCTTCCAAAAAAAGCGGCTGCTAA

Protein sequence

MMGNYHVRFGERWDRQDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIGWAYVFQLHRTVRWEGSVPPLDISSPRAPNVELERQLPWNLRSHMSTSPSKKSGC

Homology

[Close]

BLAST of Lsi01G010870 vs. ExPASy Swiss-Prot
Match: P93306 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX=3702 GN=NAD7 PE=1 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-34
Identity = 75/99 (75.76%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 18  PARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVS 77
           P+RC++ LS+             +SIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVS
Sbjct: 297 PSRCRMKLSM------------ESSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVS 356

Query: 78  NGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           NGSNRPYR KIRAPG AH QGLD MSKHHM ADVVTIIG
Sbjct: 357 NGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIG 383

[Close]

BLAST of Lsi01G010870 vs. ExPASy Swiss-Prot
Match: Q36450 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX=4096 GN=NAD7 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-34
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 41  TSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLD 100
           +SIHHFE YTEGFSVPA STYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAP  AHSQGLD
Sbjct: 308 SSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPCFAHSQGLD 367

Query: 101 SMSKHHMPADVVTIIG 117
           SMSKHHMPADVVTIIG
Sbjct: 368 SMSKHHMPADVVTIIG 383

[Close]

BLAST of Lsi01G010870 vs. ExPASy Swiss-Prot
Match: Q9TC96 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea OX=31312 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-27
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 43  IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSM 102
           IHHF+L+TEG++VP S TYT+VEAPKGEFGV+LVSNG+NRPYR KIRAPG  H QGLD M
Sbjct: 314 IHHFKLFTEGYTVPNSETYTSVEAPKGEFGVYLVSNGTNRPYRCKIRAPGFLHLQGLDMM 373

Query: 103 SKHHMPADVVTIIG 117
           SK+HM ADVVTIIG
Sbjct: 374 SKNHMLADVVTIIG 387

[Close]

BLAST of Lsi01G010870 vs. ExPASy Swiss-Prot
Match: Q37619 (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii OX=3111 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.8e-26
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 43  IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSM 102
           IHHF+ YT GF VPA  TYTAVEAPKGEFGV+LVSNG+++PYR KIRAPG AH QGLD M
Sbjct: 316 IHHFKFYTGGFVVPAGETYTAVEAPKGEFGVYLVSNGTSKPYRCKIRAPGFAHLQGLDFM 375

Query: 103 SKHHMPADVVTIIG 117
           +++HM ADVVTIIG
Sbjct: 376 ARNHMLADVVTIIG 389

[Close]

BLAST of Lsi01G010870 vs. ExPASy Swiss-Prot
Match: O21270 (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana OX=48483 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.8e-26
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 43  IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSM 102
           IHHF+LYTEG+SVP   TYTAVEAPKGEFGV+LVS+GS++PYR KI+APG +H QGL+ M
Sbjct: 312 IHHFKLYTEGYSVPIGETYTAVEAPKGEFGVYLVSDGSSKPYRCKIKAPGFSHLQGLNFM 371

Query: 103 SKHHMPADVVTIIG 117
           SK HM ADVVTIIG
Sbjct: 372 SKGHMIADVVTIIG 385

[Close]

BLAST of Lsi01G010870 vs. ExPASy TrEMBL
Match: A0A1S3X6J4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107761612 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.2e-51
Identity = 107/117 (91.45%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 2   MGNYHVRFGERWDR--QDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPASS 61
           MGNYHVRFGERWDR     +RCKLFLSIAGQMTTG SSVYSTSIHHFE YTEGFSVPA S
Sbjct: 75  MGNYHVRFGERWDRLYNRGSRCKLFLSIAGQMTTG-SSVYSTSIHHFEPYTEGFSVPAPS 134

Query: 62  TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPG AHSQGLDSMSKHHMPADVVTIIG
Sbjct: 135 TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 190

[Close]

BLAST of Lsi01G010870 vs. ExPASy TrEMBL
Match: A0A2G2Y7L1 (Complex1_49kDa domain-containing protein OS=Capsicum annuum OX=4072 GN=T459_30168 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.4e-50
Identity = 105/117 (89.74%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 2   MGNYHVRFGERWDR--QDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPASS 61
           MGNYHVRFGERWDR     +RCKLFLSIAGQMTTG SSVYSTSIHHFE YTEGFSVPA S
Sbjct: 1   MGNYHVRFGERWDRLYNRGSRCKLFLSIAGQMTTG-SSVYSTSIHHFEPYTEGFSVPAPS 60

Query: 62  TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           TYT VEAPKGEFGVFLVSNGSNRPY RKIRAPG AHSQGLDSMSKHHMPADVVTIIG
Sbjct: 61  TYTTVEAPKGEFGVFLVSNGSNRPYHRKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 116

[Close]

BLAST of Lsi01G010870 vs. ExPASy TrEMBL
Match: A0A151UDY3 (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Cajanus cajan OX=3821 GN=KK1_046510 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.1e-50
Identity = 106/117 (90.60%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 2   MGNYHVRFGERWD--RQDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPASS 61
           MGNYHVRFGER D      +RCKLFLSIAG+MTTG SSVYSTSIHHFELYTEGFSVPA S
Sbjct: 1   MGNYHVRFGERSDLLLNRESRCKLFLSIAGKMTTG-SSVYSTSIHHFELYTEGFSVPAPS 60

Query: 62  TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG
Sbjct: 61  TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 116

[Close]

BLAST of Lsi01G010870 vs. ExPASy TrEMBL
Match: A0A6N2B279 (Complex1_49kDa domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017817 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 8.5e-48
Identity = 101/118 (85.59%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   MMGNYHVRFGERWDR--QDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPAS 60
           MMGNYHVRFGERWDR     +RCKLFLSIAGQMTT  SSVYSTSIHHFE Y EGFSVP  
Sbjct: 1   MMGNYHVRFGERWDRLYDRGSRCKLFLSIAGQMTT-RSSVYSTSIHHFEPYIEGFSVPTP 60

Query: 61  STYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           STYT VEAPKGEFGVFLVSNGSNRPYR  IRAPG AHSQGL+SMSKHHMPADVVTIIG
Sbjct: 61  STYTTVEAPKGEFGVFLVSNGSNRPYRHNIRAPGFAHSQGLNSMSKHHMPADVVTIIG 117

[Close]

BLAST of Lsi01G010870 vs. ExPASy TrEMBL
Match: D7TKS7 (Complex1_49kDa domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_00s0246g00010 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 8.0e-46
Identity = 99/109 (90.83%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 10  GERWDR--QDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPASSTYTAVEAP 69
           GERWDR     +RCKLFLSIAGQMTTG SSVYSTSIHHFE YTEGF VPA STYTAVEAP
Sbjct: 267 GERWDRLYNRGSRCKLFLSIAGQMTTG-SSVYSTSIHHFEPYTEGFFVPAPSTYTAVEAP 326

Query: 70  KGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           KGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG
Sbjct: 327 KGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 374

[Close]

BLAST of Lsi01G010870 vs. NCBI nr
Match: KAG8362771.1 (hypothetical protein BUALT_BualtUnG0042100 [Buddleja alternifolia] >KAG8363164.1 hypothetical protein BUALT_BualtMtG0003100 [Buddleja alternifolia])

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-52
Identity = 109/118 (92.37%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MMGNYHVRFGERWDR--QDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPAS 60
           MMGNYHVRFGERWDR     +RCKLFLSIAGQMTTG SSVYSTSIHHFE YTEGFSVPAS
Sbjct: 440 MMGNYHVRFGERWDRLYNRGSRCKLFLSIAGQMTTG-SSVYSTSIHHFEPYTEGFSVPAS 499

Query: 61  STYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           STYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPG AHSQGLDSMSKHHMPADVVTIIG
Sbjct: 500 STYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 556

[Close]

BLAST of Lsi01G010870 vs. NCBI nr
Match: XP_022897754.1 (uncharacterized protein LOC111411454 [Olea europaea var. sylvestris])

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-51
Identity = 108/117 (92.31%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 2   MGNYHVRFGERWDR--QDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPASS 61
           MGNYHVRFGERWDR     +RCKLFLSIAGQMTTG SSVYSTSIHHFE YTEGFSVPASS
Sbjct: 1   MGNYHVRFGERWDRLYNRGSRCKLFLSIAGQMTTG-SSVYSTSIHHFEPYTEGFSVPASS 60

Query: 62  TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPG AHSQGLDSMSKHHMPADVVTIIG
Sbjct: 61  TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 116

[Close]

BLAST of Lsi01G010870 vs. NCBI nr
Match: QVJ97872.1 (hypothetical protein [Apium graveolens] >QVJ98117.1 hypothetical protein [Apium graveolens])

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-51
Identity = 108/118 (91.53%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MMGNYHVRFGERWDR--QDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPAS 60
           MMGNYHVRFGERWDR     +RCKLFLSIAGQMTT  SSVYSTSIHHFE YTEGFSVPA 
Sbjct: 1   MMGNYHVRFGERWDRLYNRGSRCKLFLSIAGQMTT-RSSVYSTSIHHFEPYTEGFSVPAP 60

Query: 61  STYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           STYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG
Sbjct: 61  STYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117

[Close]

BLAST of Lsi01G010870 vs. NCBI nr
Match: XP_016435338.1 (PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like [Nicotiana tabacum])

HSP 1 Score: 211.8 bits (538), Expect = 4.5e-51
Identity = 107/117 (91.45%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 2   MGNYHVRFGERWDR--QDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPASS 61
           MGNYHVRFGERWDR     +RCKLFLSIAGQMTTG SSVYSTSIHHFE YTEGFSVPA S
Sbjct: 75  MGNYHVRFGERWDRLYNRGSRCKLFLSIAGQMTTG-SSVYSTSIHHFEPYTEGFSVPAPS 134

Query: 62  TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPG AHSQGLDSMSKHHMPADVVTIIG
Sbjct: 135 TYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 190

[Close]

BLAST of Lsi01G010870 vs. NCBI nr
Match: XP_018628934.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like [Nicotiana tomentosiformis])

HSP 1 Score: 211.5 bits (537), Expect = 5.8e-51
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MMGNYHVRFGERWDR--QDPARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPAS 60
           MMGNYHVRFGERWDR     +RCKLFLSIAGQMTTG SSVYSTSIHHFE YTEGFSVP+ 
Sbjct: 75  MMGNYHVRFGERWDRLYNRGSRCKLFLSIAGQMTTG-SSVYSTSIHHFEPYTEGFSVPSP 134

Query: 61  STYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           ST+TAVEAPKGEFGVFLVSNGSNRPYRRKIRAPG AHSQGLDSMSKHHMPADVVTIIG
Sbjct: 135 STFTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 191

[Close]

BLAST of Lsi01G010870 vs. TAIR 10
Match: ATMG00510.1 (NADH dehydrogenase subunit 7 )

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-39
Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 18  PARCKLFLSIAGQMTTGSSSVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVS 77
           P+RC++ LS+             +SIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVS
Sbjct: 297 PSRCRMKLSM------------ESSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVS 356

Query: 78  NGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 117
           NGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG
Sbjct: 357 NGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 383

[Close]

BLAST of Lsi01G010870 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 53  FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVV 112
           F +     Y  VEAPKGE G+FL+ + S  P+R KIR PG  + Q L  + K    AD++
Sbjct: 319 FELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQILPELVKRMKLADIM 378

Query: 113 TIIG 117
           TI+G
Sbjct: 379 TILG 382

The following BLAST results are available for this feature:

BLAST of Lsi01G010870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93306	5.2e-34	75.76	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX...	[more]
Q36450	5.2e-34	93.42	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX...	[more]
Q9TC96	2.7e-27	78.38	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea O...	[more]
Q37619	6.8e-26	75.68	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii OX=3111 ...	[more]
O21270	8.8e-26	75.68	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana OX=48483...	[more]

BLAST of Lsi01G010870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3X6J4	2.2e-51	91.45	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like OS=Nicotiana tabacum ...	[more]
A0A2G2Y7L1	2.4e-50	89.74	Complex1_49kDa domain-containing protein OS=Capsicum annuum OX=4072 GN=T459_3016...	[more]
A0A151UDY3	4.1e-50	90.60	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Cajanus cajan OX=3821 GN=KK1_04...	[more]
A0A6N2B279	8.5e-48	85.59	Complex1_49kDa domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_01...	[more]
D7TKS7	8.0e-46	90.83	Complex1_49kDa domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_00s02...	[more]

BLAST of Lsi01G010870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8362771.1	2.4e-52	92.37	hypothetical protein BUALT_BualtUnG0042100 [Buddleja alternifolia] >KAG8363164.1...	[more]
XP_022897754.1	1.2e-51	92.31	uncharacterized protein LOC111411454 [Olea europaea var. sylvestris]	[more]
QVJ97872.1	1.5e-51	91.53	hypothetical protein [Apium graveolens] >QVJ98117.1 hypothetical protein [Apium ...	[more]
XP_016435338.1	4.5e-51	91.45	PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like [Nicotiana...	[more]
XP_018628934.1	5.8e-51	89.83	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like [Nicotiana tomentosif...	[more]

BLAST of Lsi01G010870 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00510.1	2.5e-39	80.81	NADH dehydrogenase subunit 7	[more]
ATCG01110.1	2.2e-08	43.75	NAD(P)H dehydrogenase subunit H	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001135	NADH-quinone oxidoreductase, subunit D	PFAM	PF00346	Complex1_49kDa	coord: 39..116 e-value: 3.1E-24 score: 85.5
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 16..121 e-value: 1.3E-27 score: 98.5
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	56762	HydB/Nqo4-like	coord: 39..116
IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 34..117
None	No IPR available	PANTHER	PTHR11993:SF10	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 2, MITOCHONDRIAL	coord: 34..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G010870.1	Lsi01G010870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H