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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGACCAGAAAAGAGCAATAATAGCAATAATAATTCCAATTCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTTAATGGAGATCAAGATGTTCAAACACAGATCGACAATGTTCTCCATGGCCACCCCAAAACGACAAGTCGTTTACTGGTATTCAAACAAATATGCCCCGATGAAAATTGA mRNA sequence ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGACCAGAAAAGAGCAATAATAGCAATAATAATTCCAATTCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTTAATGGAGATCAAGATGTTCAAACACAGATCGACAATGTTCTCCATGGCCACCCCAAAACGACAAGTCGTTTACTGGTATTCAAACAAATATGCCCCGATGAAAATTGA Coding sequence (CDS) ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAATGGAAATAAGAGACCAGAAAAGAGCAATAATAGCAATAATAATTCCAATTCAACATGGTCACCAATTTCAGATCTCAAATTACAACAAGTTAATGGAGATCAAGATGTTCAAACACAGATCGACAATGTTCTCCATGGCCACCCCAAAACGACAAGTCGTTTACTGGTATTCAAACAAATATGCCCCGATGAAAATTGA Protein sequence MDQKRYYRVVNNKNGNKRPEKSNNSNNNSNSTWSPISDLKLQQVNGDQDVQTQIDNVLHGHPKTTSRLLVFKQICPDEN
Homology
BLAST of Lsi01G010790 vs. ExPASy TrEMBL
Match: A0A0A0KHZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24 Identity = 68/83 (81.93%), Postives = 73/83 (87.95%), Query Frame = 0
Query: 1 MDQKRYYRVVNNKNG--NKRPEKSNNSNNNSNSTWSPISDLKLQQ--VNGDQDVQTQIDN 60
MDQKRYYRVVNNKN NK+ EK NN+NNNSNS+WSPISDLKL Q NGDQDVQTQIDN
Sbjct: 1 MDQKRYYRVVNNKNNGINKKQEK-NNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDN 60
Query: 61 VLHGHPKTTSRLLVFKQICPDEN 80
VLHG PKTT+RLLVFKQICPD+N
Sbjct: 61 VLHG-PKTTARLLVFKQICPDQN 81
BLAST of Lsi01G010790 vs. NCBI nr
Match: KGN48424.1 (hypothetical protein Csa_003981 [Cucumis sativus]) HSP 1 Score: 120.6 bits (301), Expect = 6.3e-24 Identity = 68/83 (81.93%), Postives = 73/83 (87.95%), Query Frame = 0
Query: 1 MDQKRYYRVVNNKNG--NKRPEKSNNSNNNSNSTWSPISDLKLQQ--VNGDQDVQTQIDN 60
MDQKRYYRVVNNKN NK+ EK NN+NNNSNS+WSPISDLKL Q NGDQDVQTQIDN
Sbjct: 1 MDQKRYYRVVNNKNNGINKKQEK-NNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDN 60
Query: 61 VLHGHPKTTSRLLVFKQICPDEN 80
VLHG PKTT+RLLVFKQICPD+N
Sbjct: 61 VLHG-PKTTARLLVFKQICPDQN 81
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KHZ5 | 3.0e-24 | 81.93 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN48424.1 | 6.3e-24 | 81.93 | hypothetical protein Csa_003981 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..36 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 16..36 |
Relationships
The following mRNA feature(s) are a part of this gene:
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