Lsi01G009990 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G009990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor HHO5-like
Location	chr01: 8248442 .. 8249481 (-)
RNA-Seq Expression	Lsi01G009990
Synteny	Lsi01G009990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTGGTAACCTTTAACAGAGATTTAATTCTTAAATTATTCCTCTTTTTGAGTTGAATGGAGGGTTTTTTTTTTTTTTTTTTTTTTCGGGATAAGATTTAAATAGCTTTATGCCTTTAATTACAGAATGGGGATGAAGACGATCGGTCTGTGCCACAGACCCCAATCGAAAACTGGGATAGTGCAAAAAGACGAAGAGCATTCGAGTTGTTCAAAGATCAAAACAATTTCGTAAAAAGAGCAACAAAAGAAGATGTAGCGTTTTCCGAAGTTCCAAAACTTACTTTAATGACCCCAATCTCCGATCCTTTTCCTGTTAATTTGACCGTCAAGAGCGGTGGCAGCGGTGGACGGAACGGCAGAGCTACTGTTTCTGGGTTGTCTTCGCCGGCGGCACAAATGAAAGGACAAGCAAAATTGTCCCAACAGCAACAGACTATAAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTCCACCGGCGTTTTGTCGACGCACTGCATCGACTCGGCGGATCTCAAGGTAAAAGAATAATTCTAATAATTTTGATCCAATGGAAAATTTATTAAATCTGAGAATCAATTAATTGATCTATTTTCAATTCCGCAGTGGCAACACCAAAACAGATAAGGGAATTGATGCAAGTGGACGGCCTCACCAACGACGAAGTGAAAAGCCATTTACAAGTAGGATTAACAAAACAAAAAGACATAAATAATTTCTGGGTTCGTTTTAAATTCTCAATTTCTAAACGCAGATTTTTTTTTTCTTGTTAAAACAGAAATACAGGCTTCACGTTCGAAAATTGTCCCCTCCGGAAGGTTCAAGCGGCGAGGGGTGGATACCAGGAGAACACGGCGGCGAGCACCACTTAAAAACAAGTGTGACACACGCAGGATCCCCAGATGGACCACTCCACGGTGGTGGTTCTGGAAAAGCTCTGTCGATAACAGAAGGGGAAAGTATGGAAGGGGAAGAAGATGCGAAATCGGACGGTCATAGTTGGAAGGGAAGGATTCAGAAACATGGAGATGTGTGA

mRNA sequence

ATGAACTTGAATGGGGATGAAGACGATCGGTCTGTGCCACAGACCCCAATCGAAAACTGGGATAGTGCAAAAAGACGAAGAGCATTCGAGTTGTTCAAAGATCAAAACAATTTCGTAAAAAGAGCAACAAAAGAAGATGTAGCGTTTTCCGAAGTTCCAAAACTTACTTTAATGACCCCAATCTCCGATCCTTTTCCTGTTAATTTGACCGTCAAGAGCGGTGGCAGCGGTGGACGGAACGGCAGAGCTACTGTTTCTGGGTTGTCTTCGCCGGCGGCACAAATGAAAGGACAAGCAAAATTGTCCCAACAGCAACAGACTATAAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTCCACCGGCGTTTTGTCGACGCACTGCATCGACTCGGCGGATCTCAAGTGGCAACACCAAAACAGATAAGGGAATTGATGCAAGTGGACGGCCTCACCAACGACGAAGTGAAAAGCCATTTACAAAAATACAGGCTTCACGTTCGAAAATTGTCCCCTCCGGAAGGTTCAAGCGGCGAGGGGTGGATACCAGGAGAACACGGCGGCGAGCACCACTTAAAAACAAGTGTGACACACGCAGGATCCCCAGATGGACCACTCCACGGTGGTGGTTCTGGAAAAGCTCTGTCGATAACAGAAGGGGAAAGTATGGAAGGGGAAGAAGATGCGAAATCGGACGGTCATAGTTGGAAGGGAAGGATTCAGAAACATGGAGATGTGTGA

Coding sequence (CDS)

ATGAACTTGAATGGGGATGAAGACGATCGGTCTGTGCCACAGACCCCAATCGAAAACTGGGATAGTGCAAAAAGACGAAGAGCATTCGAGTTGTTCAAAGATCAAAACAATTTCGTAAAAAGAGCAACAAAAGAAGATGTAGCGTTTTCCGAAGTTCCAAAACTTACTTTAATGACCCCAATCTCCGATCCTTTTCCTGTTAATTTGACCGTCAAGAGCGGTGGCAGCGGTGGACGGAACGGCAGAGCTACTGTTTCTGGGTTGTCTTCGCCGGCGGCACAAATGAAAGGACAAGCAAAATTGTCCCAACAGCAACAGACTATAAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTCCACCGGCGTTTTGTCGACGCACTGCATCGACTCGGCGGATCTCAAGTGGCAACACCAAAACAGATAAGGGAATTGATGCAAGTGGACGGCCTCACCAACGACGAAGTGAAAAGCCATTTACAAAAATACAGGCTTCACGTTCGAAAATTGTCCCCTCCGGAAGGTTCAAGCGGCGAGGGGTGGATACCAGGAGAACACGGCGGCGAGCACCACTTAAAAACAAGTGTGACACACGCAGGATCCCCAGATGGACCACTCCACGGTGGTGGTTCTGGAAAAGCTCTGTCGATAACAGAAGGGGAAAGTATGGAAGGGGAAGAAGATGCGAAATCGGACGGTCATAGTTGGAAGGGAAGGATTCAGAAACATGGAGATGTGTGA

Protein sequence

MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTPISDPFPVNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGEGWIPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGRIQKHGDV

Homology

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BLAST of Lsi01G009990 vs. ExPASy Swiss-Prot
Match: Q9ZQ85 (Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 6.7e-27
Identity = 70/122 (57.38%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 102 SQQQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQK 161
           S   Q+ RK RRCWSP+LHRRFV AL  LGGSQVATPKQIRELM+VDGLTNDEVKSHLQK
Sbjct: 225 STTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQK 284

Query: 162 YRLHVRKLSP-PEGSSGEG---------WIPGE----HGG-----EHHLKTSVTHAGSPD 205
           YRLH R+ SP P+ S G G         W+P E    HGG      H +    T+   P 
Sbjct: 285 YRLHTRRPSPSPQTSGGPGPHLVVLGGIWVPPEYTSAHGGTPTLYHHQVHHHHTNTAGPP 344

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BLAST of Lsi01G009990 vs. ExPASy Swiss-Prot
Match: F4JRB0 (Transcription factor HHO5 OS=Arabidopsis thaliana OX=3702 GN=HHO5 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-27
Identity = 79/142 (55.63%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 100 KLSQQQQTIRK--QRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKS 159
           K S Q   I+K  QRR WS ELHR+FVDALHRLGG QVATPKQIR+LM+VDGLTNDEVKS
Sbjct: 205 KPSSQSHHIQKKEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKS 264

Query: 160 HLQKYRLHVRK--LSPPEGSSGEGWIPGEHGGEHHLKTSVTHAGSPDGPLHGGG---SGK 219
           HLQKYR+H+RK  L P +  S     PG    E     S++ + SP  PL   G   S  
Sbjct: 265 HLQKYRMHIRKHPLHPTKTLSSSDQ-PGVLERESQSLISLSRSDSPQSPLVARGLFSSNV 324

Query: 220 ALSITEGESMEGEEDAKSDGHS 235
             S  E E  E EE+ KSDG S
Sbjct: 325 GHSSEEDEEEEDEEEEKSDGRS 345

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BLAST of Lsi01G009990 vs. ExPASy Swiss-Prot
Match: Q9FX84 (Transcription factor HHO6 OS=Arabidopsis thaliana OX=3702 GN=HHO6 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.7e-26
Identity = 79/162 (48.77%), Postives = 93/162 (57.41%), Query Frame = 0


Query: 84  TVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRE 143
           T + +  P      Q     +QQ +RKQRRCW+PELHRRFVDAL +LGG  VATPKQIRE
Sbjct: 166 TSNSMPQPPTPAVPQQPAFLKQQALRKQRRCWNPELHRRFVDALQQLGGPGVATPKQIRE 225

Query: 144 LMQVDGLTNDEVKSHLQKYRLHVRKLSPPE-------------GSSGEGWIPGEHGGEHH 203
            MQ +GLTNDEVKSHLQKYRLH+RK +                 SS +       GGE  
Sbjct: 226 HMQEEGLTNDEVKSHLQKYRLHIRKPNSNAEKQSAVVLGFNLWNSSAQDEEETCEGGE-S 285

Query: 204 LKTSVTHAGSPDGPLHGGGSGKALSITEGE-SMEGEEDAKSD 232
           LK S   + SP GPL         + T G+ SME  EDAKS+
Sbjct: 286 LKRSNAQSDSPQGPLQ---LPSTTTTTGGDSSMEDVEDAKSE 323

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BLAST of Lsi01G009990 vs. ExPASy Swiss-Prot
Match: Q6Z869 (Transcription factor NIGT1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIGT1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 56/79 (70.89%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 104 QQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYR 163
           Q Q  RK RRCW+PELHRRF+ AL +LGGS VATPKQIRELM+VDGLTNDEVKSHLQKYR
Sbjct: 229 QSQPHRKPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYR 288

Query: 164 LHVRKLSPPEGSSGEGWIP 183
           LH R+ S    SS    +P
Sbjct: 289 LHTRRPSSTGQSSAAAGVP 307

[Close]

BLAST of Lsi01G009990 vs. ExPASy Swiss-Prot
Match: Q9FPE8 (Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-24
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 89  SSPAAQMKGQAKLSQQQQ--TIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQ 148
           SS A  + G  +  +Q+Q  + RKQRRCWSPELHRRF+ AL +LGGS VATPKQIR+LM+
Sbjct: 186 SSTAETVGGGKEFEEQKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMK 245

Query: 149 VDGLTNDEVKSHLQKYRLHVRKLSPPEGSSG 178
           VDGLTNDEVKSHLQKYRLH R+ + P   +G
Sbjct: 246 VDGLTNDEVKSHLQKYRLHTRRPATPVVRTG 276

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BLAST of Lsi01G009990 vs. ExPASy TrEMBL
Match: A0A1S3B0P5 (uncharacterized protein LOC103484758 OS=Cucumis melo OX=3656 GN=LOC103484758 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.3e-117
Identity = 221/245 (90.20%), Postives = 227/245 (92.65%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           MNL+GDEDDRSVPQTPIENW+ AKRRRAFELFKDQNNFVKRAT EDVAFSEVPKLTLMTP
Sbjct: 134 MNLDGDEDDRSVPQTPIENWNCAKRRRAFELFKDQNNFVKRATNEDVAFSEVPKLTLMTP 193

Query: 61  ISDPFPVNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELH 120
           ISDPFPVNLTVK+GG+GGRNGRA VSGLSSPA QMKGQAKLSQQQQTIRKQRRCWSPELH
Sbjct: 194 ISDPFPVNLTVKNGGNGGRNGRAAVSGLSSPAGQMKGQAKLSQQQQTIRKQRRCWSPELH 253

Query: 121 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGEGW 180
           RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSP EGSS    
Sbjct: 254 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPAEGSS---- 313

Query: 181 IPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGRIQ 240
                 GE+ LKTSVTHAGSPDGPLHGGGSGKALS TEGESME EEDAKSDGHSWKGRIQ
Sbjct: 314 ------GENELKTSVTHAGSPDGPLHGGGSGKALSTTEGESMEVEEDAKSDGHSWKGRIQ 368

Query: 241 KHGDV 246
           KHGD+
Sbjct: 374 KHGDM 368

[Close]

BLAST of Lsi01G009990 vs. ExPASy TrEMBL
Match: A0A0A0KIA9 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G490190 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.5e-117
Identity = 220/245 (89.80%), Postives = 227/245 (92.65%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           +NLNGDEDDRSVPQTPIENW+ AKRRRAFELFKDQ+NFVKRATKEDVAFSEVPKLTLMTP
Sbjct: 134 INLNGDEDDRSVPQTPIENWNCAKRRRAFELFKDQSNFVKRATKEDVAFSEVPKLTLMTP 193

Query: 61  ISDPFPVNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELH 120
           ISDPFPVNLTVK+GG+GGRNGRA VSGLSSPA QMKGQ KLSQQQQTIRKQRRCWSPELH
Sbjct: 194 ISDPFPVNLTVKNGGNGGRNGRAAVSGLSSPAGQMKGQPKLSQQQQTIRKQRRCWSPELH 253

Query: 121 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGEGW 180
           RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSP EGSS    
Sbjct: 254 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPAEGSS---- 313

Query: 181 IPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGRIQ 240
                 GE+ LKTSVTHAGSPDGPLHGGGSGKALS TEGESME EEDAKSDGHSWKGRIQ
Sbjct: 314 ------GENELKTSVTHAGSPDGPLHGGGSGKALSTTEGESMEVEEDAKSDGHSWKGRIQ 368

Query: 241 KHGDV 246
           KHGD+
Sbjct: 374 KHGDM 368

[Close]

BLAST of Lsi01G009990 vs. ExPASy TrEMBL
Match: A0A6J1GGX4 (transcription factor HHO5-like OS=Cucurbita moschata OX=3662 GN=LOC111453805 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 212/247 (85.83%), Postives = 222/247 (89.88%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           MNL+GDEDDRSVPQT IE+WD  KRRRAFELFKDQ+NFVKR+ KED+A SEVPKLTLMT 
Sbjct: 134 MNLDGDEDDRSVPQTQIEHWDCEKRRRAFELFKDQSNFVKRSKKEDMAVSEVPKLTLMTT 193

Query: 61  ISDPFP--VNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPE 120
           ISDPFP  VNLTVK+G   GR+GRA VSG SSPA Q+ GQ KLSQQQQTIRKQRRCWSP 
Sbjct: 194 ISDPFPVNVNLTVKNGRVSGRSGRAAVSGSSSPAVQINGQTKLSQQQQTIRKQRRCWSPG 253

Query: 121 LHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGE 180
           LHRRF+DALHRLGGSQVATPKQI+ELMQVDGLTNDEVKSHLQKYRLHVRKL P EGSSGE
Sbjct: 254 LHRRFIDALHRLGGSQVATPKQIKELMQVDGLTNDEVKSHLQKYRLHVRKLGPQEGSSGE 313

Query: 181 GWIPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGR 240
           GWIPGEH GEHH KTS T AGSPDGPL GGGS KALSITEGESMEGEEDAKSDGHSWKGR
Sbjct: 314 GWIPGEHDGEHHSKTSGTQAGSPDGPLQGGGSVKALSITEGESMEGEEDAKSDGHSWKGR 373

Query: 241 IQKHGDV 246
           IQKHGDV
Sbjct: 374 IQKHGDV 380

[Close]

BLAST of Lsi01G009990 vs. ExPASy TrEMBL
Match: A0A6J1IIT1 (transcription factor HHO5-like OS=Cucurbita maxima OX=3661 GN=LOC111477839 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 7.1e-112
Identity = 211/247 (85.43%), Postives = 222/247 (89.88%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           MNL+GDEDDRSVPQT IE+WD  K+RRAFELFKDQ+NFVKR+TKEDVA SEVPKLTLMT 
Sbjct: 134 MNLDGDEDDRSVPQTQIEHWDCEKKRRAFELFKDQSNFVKRSTKEDVAVSEVPKLTLMTT 193

Query: 61  ISDPFP--VNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPE 120
           ISDPFP  VNLTVK+G   GR+GRA VSG SSP  Q+ GQ KLSQQQ TIRKQRRCWSP 
Sbjct: 194 ISDPFPVNVNLTVKNGRVSGRSGRAAVSGSSSPVVQINGQTKLSQQQHTIRKQRRCWSPG 253

Query: 121 LHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGE 180
           LHRRF+DALHRLGGSQVATPKQI+ELMQVDGLTNDEVKSHLQKYRLHVRKL+P EGSSGE
Sbjct: 254 LHRRFIDALHRLGGSQVATPKQIKELMQVDGLTNDEVKSHLQKYRLHVRKLAPQEGSSGE 313

Query: 181 GWIPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGR 240
           GWIPGEH GEHH KTS T AGSPDGPL GGGSGKALSITEGESMEGEEDAKSDGHSWKGR
Sbjct: 314 GWIPGEHEGEHHSKTSGTLAGSPDGPLQGGGSGKALSITEGESMEGEEDAKSDGHSWKGR 373

Query: 241 IQKHGDV 246
           IQKHG V
Sbjct: 374 IQKHGYV 380

[Close]

BLAST of Lsi01G009990 vs. ExPASy TrEMBL
Match: A0A6J1KS63 (transcription factor HHO5-like OS=Cucurbita maxima OX=3661 GN=LOC111497148 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.5e-109
Identity = 209/244 (85.66%), Postives = 218/244 (89.34%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           MNLNGDEDDRSVPQTPIE+WD AKRRRAFELFKDQNNFVK ATK DVAFSEVPKLTLMTP
Sbjct: 136 MNLNGDEDDRSVPQTPIEHWDCAKRRRAFELFKDQNNFVKGATK-DVAFSEVPKLTLMTP 195

Query: 61  ISDPFPVNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELH 120
           ISDPF  NLT+K+G +  R   A+VSGLSSPAAQ+ G AKLSQ QQTIRKQRRCWSPELH
Sbjct: 196 ISDPFSANLTLKNGTA--RGSSASVSGLSSPAAQITGHAKLSQHQQTIRKQRRCWSPELH 255

Query: 121 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGEGW 180
           RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKL P EGS G GW
Sbjct: 256 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLGPTEGSGGGGW 315

Query: 181 IPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGRIQ 240
           +   H G+HH KTS THAGSPDGPL GGGSGKALSITEGESMEGEEDAKS+GHSWKGRIQ
Sbjct: 316 MAEAHQGDHHSKTSATHAGSPDGPLQGGGSGKALSITEGESMEGEEDAKSEGHSWKGRIQ 375

Query: 241 KHGD 245
           K GD
Sbjct: 376 KVGD 376

[Close]

BLAST of Lsi01G009990 vs. NCBI nr
Match: XP_038881045.1 (transcription factor HHO5 [Benincasa hispida])

HSP 1 Score: 478.4 bits (1230), Expect = 3.7e-131
Identity = 238/245 (97.14%), Postives = 242/245 (98.78%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           MNLNGDEDDRSVPQTPIENWD AKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP
Sbjct: 137 MNLNGDEDDRSVPQTPIENWDCAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 196

Query: 61  ISDPFPVNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELH 120
           ISDPFPV+LTVKSGG GGR+GRA VSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELH
Sbjct: 197 ISDPFPVSLTVKSGGGGGRSGRAAVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELH 256

Query: 121 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGEGW 180
           RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGS+GEGW
Sbjct: 257 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSNGEGW 316

Query: 181 IPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGRIQ 240
           IPGEHGGE+HLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGRIQ
Sbjct: 317 IPGEHGGENHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGRIQ 376

Query: 241 KHGDV 246
           KHGDV
Sbjct: 377 KHGDV 381

[Close]

BLAST of Lsi01G009990 vs. NCBI nr
Match: XP_008440244.1 (PREDICTED: uncharacterized protein LOC103484758 [Cucumis melo])

HSP 1 Score: 431.0 bits (1107), Expect = 6.8e-117
Identity = 221/245 (90.20%), Postives = 227/245 (92.65%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           MNL+GDEDDRSVPQTPIENW+ AKRRRAFELFKDQNNFVKRAT EDVAFSEVPKLTLMTP
Sbjct: 134 MNLDGDEDDRSVPQTPIENWNCAKRRRAFELFKDQNNFVKRATNEDVAFSEVPKLTLMTP 193

Query: 61  ISDPFPVNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELH 120
           ISDPFPVNLTVK+GG+GGRNGRA VSGLSSPA QMKGQAKLSQQQQTIRKQRRCWSPELH
Sbjct: 194 ISDPFPVNLTVKNGGNGGRNGRAAVSGLSSPAGQMKGQAKLSQQQQTIRKQRRCWSPELH 253

Query: 121 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGEGW 180
           RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSP EGSS    
Sbjct: 254 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPAEGSS---- 313

Query: 181 IPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGRIQ 240
                 GE+ LKTSVTHAGSPDGPLHGGGSGKALS TEGESME EEDAKSDGHSWKGRIQ
Sbjct: 314 ------GENELKTSVTHAGSPDGPLHGGGSGKALSTTEGESMEVEEDAKSDGHSWKGRIQ 368

Query: 241 KHGDV 246
           KHGD+
Sbjct: 374 KHGDM 368

[Close]

BLAST of Lsi01G009990 vs. NCBI nr
Match: XP_004141926.1 (transcription factor HHO5 [Cucumis sativus] >KGN48504.1 hypothetical protein Csa_004116 [Cucumis sativus])

HSP 1 Score: 429.5 bits (1103), Expect = 2.0e-116
Identity = 220/245 (89.80%), Postives = 227/245 (92.65%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           +NLNGDEDDRSVPQTPIENW+ AKRRRAFELFKDQ+NFVKRATKEDVAFSEVPKLTLMTP
Sbjct: 134 INLNGDEDDRSVPQTPIENWNCAKRRRAFELFKDQSNFVKRATKEDVAFSEVPKLTLMTP 193

Query: 61  ISDPFPVNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELH 120
           ISDPFPVNLTVK+GG+GGRNGRA VSGLSSPA QMKGQ KLSQQQQTIRKQRRCWSPELH
Sbjct: 194 ISDPFPVNLTVKNGGNGGRNGRAAVSGLSSPAGQMKGQPKLSQQQQTIRKQRRCWSPELH 253

Query: 121 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGEGW 180
           RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSP EGSS    
Sbjct: 254 RRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPAEGSS---- 313

Query: 181 IPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGRIQ 240
                 GE+ LKTSVTHAGSPDGPLHGGGSGKALS TEGESME EEDAKSDGHSWKGRIQ
Sbjct: 314 ------GENELKTSVTHAGSPDGPLHGGGSGKALSTTEGESMEVEEDAKSDGHSWKGRIQ 368

Query: 241 KHGDV 246
           KHGD+
Sbjct: 374 KHGDM 368

[Close]

BLAST of Lsi01G009990 vs. NCBI nr
Match: KAG6604194.1 (Protein misato-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 419.1 bits (1076), Expect = 2.7e-113
Identity = 213/247 (86.23%), Postives = 223/247 (90.28%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           MNL+GDEDDRSVPQT IE+WD  KRRRAFELFKDQ+NFVKR+ KED+A SEVPKLTLMT 
Sbjct: 134 MNLDGDEDDRSVPQTQIEHWDCEKRRRAFELFKDQSNFVKRSKKEDMAVSEVPKLTLMTT 193

Query: 61  ISDPFP--VNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPE 120
           ISDPFP  VNLTVK+G   GR+GRA VSG SSPA Q+ GQ KLSQQQQTIRKQRRCWSP 
Sbjct: 194 ISDPFPVNVNLTVKNGRVSGRSGRAAVSGSSSPAVQINGQTKLSQQQQTIRKQRRCWSPG 253

Query: 121 LHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGE 180
           LHRRF+DALHRLGGSQVATPKQI+ELMQVDGLTNDEVKSHLQKYRLHVRKL P EGSSGE
Sbjct: 254 LHRRFIDALHRLGGSQVATPKQIKELMQVDGLTNDEVKSHLQKYRLHVRKLGPQEGSSGE 313

Query: 181 GWIPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGR 240
           GWIPGEH GEHH KTS T AGSPDGPL GGGSGKALSITEGESMEGEEDAKSDGHSWKGR
Sbjct: 314 GWIPGEHDGEHHSKTSGTQAGSPDGPLQGGGSGKALSITEGESMEGEEDAKSDGHSWKGR 373

Query: 241 IQKHGDV 246
           IQKHGDV
Sbjct: 374 IQKHGDV 380

[Close]

BLAST of Lsi01G009990 vs. NCBI nr
Match: XP_022950809.1 (transcription factor HHO5-like [Cucurbita moschata] >KAG7034356.1 Myb family transcription factor EFM [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 415.6 bits (1067), Expect = 2.9e-112
Identity = 212/247 (85.83%), Postives = 222/247 (89.88%), Query Frame = 0


Query: 1   MNLNGDEDDRSVPQTPIENWDSAKRRRAFELFKDQNNFVKRATKEDVAFSEVPKLTLMTP 60
           MNL+GDEDDRSVPQT IE+WD  KRRRAFELFKDQ+NFVKR+ KED+A SEVPKLTLMT 
Sbjct: 134 MNLDGDEDDRSVPQTQIEHWDCEKRRRAFELFKDQSNFVKRSKKEDMAVSEVPKLTLMTT 193

Query: 61  ISDPFP--VNLTVKSGGSGGRNGRATVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPE 120
           ISDPFP  VNLTVK+G   GR+GRA VSG SSPA Q+ GQ KLSQQQQTIRKQRRCWSP 
Sbjct: 194 ISDPFPVNVNLTVKNGRVSGRSGRAAVSGSSSPAVQINGQTKLSQQQQTIRKQRRCWSPG 253

Query: 121 LHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRKLSPPEGSSGE 180
           LHRRF+DALHRLGGSQVATPKQI+ELMQVDGLTNDEVKSHLQKYRLHVRKL P EGSSGE
Sbjct: 254 LHRRFIDALHRLGGSQVATPKQIKELMQVDGLTNDEVKSHLQKYRLHVRKLGPQEGSSGE 313

Query: 181 GWIPGEHGGEHHLKTSVTHAGSPDGPLHGGGSGKALSITEGESMEGEEDAKSDGHSWKGR 240
           GWIPGEH GEHH KTS T AGSPDGPL GGGS KALSITEGESMEGEEDAKSDGHSWKGR
Sbjct: 314 GWIPGEHDGEHHSKTSGTQAGSPDGPLQGGGSVKALSITEGESMEGEEDAKSDGHSWKGR 373

Query: 241 IQKHGDV 246
           IQKHGDV
Sbjct: 374 IQKHGDV 380

[Close]

BLAST of Lsi01G009990 vs. TAIR 10
Match: AT2G03500.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 4.8e-28
Identity = 70/122 (57.38%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 102 SQQQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQK 161
           S   Q+ RK RRCWSP+LHRRFV AL  LGGSQVATPKQIRELM+VDGLTNDEVKSHLQK
Sbjct: 225 STTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQK 284

Query: 162 YRLHVRKLSP-PEGSSGEG---------WIPGE----HGG-----EHHLKTSVTHAGSPD 205
           YRLH R+ SP P+ S G G         W+P E    HGG      H +    T+   P 
Sbjct: 285 YRLHTRRPSPSPQTSGGPGPHLVVLGGIWVPPEYTSAHGGTPTLYHHQVHHHHTNTAGPP 344

[Close]

BLAST of Lsi01G009990 vs. TAIR 10
Match: AT4G37180.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 6.3e-28
Identity = 79/142 (55.63%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 100 KLSQQQQTIRK--QRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKS 159
           K S Q   I+K  QRR WS ELHR+FVDALHRLGG QVATPKQIR+LM+VDGLTNDEVKS
Sbjct: 205 KPSSQSHHIQKKEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKS 264

Query: 160 HLQKYRLHVRK--LSPPEGSSGEGWIPGEHGGEHHLKTSVTHAGSPDGPLHGGG---SGK 219
           HLQKYR+H+RK  L P +  S     PG    E     S++ + SP  PL   G   S  
Sbjct: 265 HLQKYRMHIRKHPLHPTKTLSSSDQ-PGVLERESQSLISLSRSDSPQSPLVARGLFSSNV 324

Query: 220 ALSITEGESMEGEEDAKSDGHS 235
             S  E E  E EE+ KSDG S
Sbjct: 325 GHSSEEDEEEEDEEEEKSDGRS 345

[Close]

BLAST of Lsi01G009990 vs. TAIR 10
Match: AT4G37180.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 6.3e-28
Identity = 79/142 (55.63%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 100 KLSQQQQTIRK--QRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQVDGLTNDEVKS 159
           K S Q   I+K  QRR WS ELHR+FVDALHRLGG QVATPKQIR+LM+VDGLTNDEVKS
Sbjct: 198 KPSSQSHHIQKKEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKS 257

Query: 160 HLQKYRLHVRK--LSPPEGSSGEGWIPGEHGGEHHLKTSVTHAGSPDGPLHGGG---SGK 219
           HLQKYR+H+RK  L P +  S     PG    E     S++ + SP  PL   G   S  
Sbjct: 258 HLQKYRMHIRKHPLHPTKTLSSSDQ-PGVLERESQSLISLSRSDSPQSPLVARGLFSSNV 317

Query: 220 ALSITEGESMEGEEDAKSDGHS 235
             S  E E  E EE+ KSDG S
Sbjct: 318 GHSSEEDEEEEDEEEEKSDGRS 338

[Close]

BLAST of Lsi01G009990 vs. TAIR 10
Match: AT1G49560.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 6.9e-27
Identity = 79/162 (48.77%), Postives = 93/162 (57.41%), Query Frame = 0


Query: 84  TVSGLSSPAAQMKGQAKLSQQQQTIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRE 143
           T + +  P      Q     +QQ +RKQRRCW+PELHRRFVDAL +LGG  VATPKQIRE
Sbjct: 166 TSNSMPQPPTPAVPQQPAFLKQQALRKQRRCWNPELHRRFVDALQQLGGPGVATPKQIRE 225

Query: 144 LMQVDGLTNDEVKSHLQKYRLHVRKLSPPE-------------GSSGEGWIPGEHGGEHH 203
            MQ +GLTNDEVKSHLQKYRLH+RK +                 SS +       GGE  
Sbjct: 226 HMQEEGLTNDEVKSHLQKYRLHIRKPNSNAEKQSAVVLGFNLWNSSAQDEEETCEGGE-S 285

Query: 204 LKTSVTHAGSPDGPLHGGGSGKALSITEGE-SMEGEEDAKSD 232
           LK S   + SP GPL         + T G+ SME  EDAKS+
Sbjct: 286 LKRSNAQSDSPQGPLQ---LPSTTTTTGGDSSMEDVEDAKSE 323

[Close]

BLAST of Lsi01G009990 vs. TAIR 10
Match: AT1G25550.1 (myb-like transcription factor family protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-25
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 89  SSPAAQMKGQAKLSQQQQ--TIRKQRRCWSPELHRRFVDALHRLGGSQVATPKQIRELMQ 148
           SS A  + G  +  +Q+Q  + RKQRRCWSPELHRRF+ AL +LGGS VATPKQIR+LM+
Sbjct: 186 SSTAETVGGGKEFEEQKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMK 245

Query: 149 VDGLTNDEVKSHLQKYRLHVRKLSPPEGSSG 178
           VDGLTNDEVKSHLQKYRLH R+ + P   +G
Sbjct: 246 VDGLTNDEVKSHLQKYRLHTRRPATPVVRTG 276

The following BLAST results are available for this feature:

BLAST of Lsi01G009990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQ85	6.7e-27	57.38	Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 ...	[more]
F4JRB0	8.8e-27	55.63	Transcription factor HHO5 OS=Arabidopsis thaliana OX=3702 GN=HHO5 PE=1 SV=1	[more]
Q9FX84	9.7e-26	48.77	Transcription factor HHO6 OS=Arabidopsis thaliana OX=3702 GN=HHO6 PE=2 SV=1	[more]
Q6Z869	1.4e-24	70.89	Transcription factor NIGT1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIGT1 PE=...	[more]
Q9FPE8	1.8e-24	64.84	Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1	[more]

BLAST of Lsi01G009990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B0P5	3.3e-117	90.20	uncharacterized protein LOC103484758 OS=Cucumis melo OX=3656 GN=LOC103484758 PE=...	[more]
A0A0A0KIA9	9.5e-117	89.80	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G49019...	[more]
A0A6J1GGX4	1.4e-112	85.83	transcription factor HHO5-like OS=Cucurbita moschata OX=3662 GN=LOC111453805 PE=...	[more]
A0A6J1IIT1	7.1e-112	85.43	transcription factor HHO5-like OS=Cucurbita maxima OX=3661 GN=LOC111477839 PE=4 ...	[more]
A0A6J1KS63	2.5e-109	85.66	transcription factor HHO5-like OS=Cucurbita maxima OX=3661 GN=LOC111497148 PE=4 ...	[more]

BLAST of Lsi01G009990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881045.1	3.7e-131	97.14	transcription factor HHO5 [Benincasa hispida]	[more]
XP_008440244.1	6.8e-117	90.20	PREDICTED: uncharacterized protein LOC103484758 [Cucumis melo]	[more]
XP_004141926.1	2.0e-116	89.80	transcription factor HHO5 [Cucumis sativus] >KGN48504.1 hypothetical protein Csa...	[more]
KAG6604194.1	2.7e-113	86.23	Protein misato-like 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022950809.1	2.9e-112	85.83	transcription factor HHO5-like [Cucurbita moschata] >KAG7034356.1 Myb family tra...	[more]

BLAST of Lsi01G009990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03500.1	4.8e-28	57.38	Homeodomain-like superfamily protein	[more]
AT4G37180.2	6.3e-28	55.63	Homeodomain-like superfamily protein	[more]
AT4G37180.1	6.3e-28	55.63	Homeodomain-like superfamily protein	[more]
AT1G49560.1	6.9e-27	48.77	Homeodomain-like superfamily protein	[more]
AT1G25550.1	1.3e-25	64.84	myb-like transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 109..166 e-value: 4.5E-27 score: 95.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR31003:SF22	TRANSCRIPTION FACTOR HHO5	coord: 3..239
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 110..165 e-value: 1.3E-26 score: 90.6
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 112..163 e-value: 1.2E-7 score: 31.8
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 107..167 score: 14.191622
IPR044787	Myb family transcription factor HRS1-like	PANTHER	PTHR31003	MYB FAMILY TRANSCRIPTION FACTOR	coord: 3..239
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 107..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G009990.1	Lsi01G009990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity