Lsi01G009890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G009890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	precursor of CEP7-like
Location	chr01: 8176181 .. 8176483 (-)
RNA-Seq Expression	Lsi01G009890
Synteny	Lsi01G009890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGTGCTCAGTTTTTAACTTACTTGTTTGTATTAATGATTTTGTCTCACCAACTTGTTCTGATCGAAGGAAGGAGGTTGAAAGTAAAGAAAAATGGGCTGCGTTGTGGGAATTGCATGACTCCCGACGCTGCAAAAACCATAACCAAATCAGACGAAGCACAAAAAAGCATTAATAATGATGCTAAATACAGCAAGAATAAGCTGCACCACAGAATTGCCGATGGCTTTGTCGACGCCTTTCGCCCCACCACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

mRNA sequence

ATGGGCAGTGCTCAGTTTTTAACTTACTTGTTTGTATTAATGATTTTGTCTCACCAACTTGTTCTGATCGAAGGAAGGAGGTTGAAAGTAAAGAAAAATGGGCTGCGTTGTGGGAATTGCATGACTCCCGACGCTGCAAAAACCATAACCAAATCAGACGAAGCACAAAAAAGCATTAATAATGATGCTAAATACAGCAAGAATAAGCTGCACCACAGAATTGCCGATGGCTTTGTCGACGCCTTTCGCCCCACCACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

Coding sequence (CDS)

ATGGGCAGTGCTCAGTTTTTAACTTACTTGTTTGTATTAATGATTTTGTCTCACCAACTTGTTCTGATCGAAGGAAGGAGGTTGAAAGTAAAGAAAAATGGGCTGCGTTGTGGGAATTGCATGACTCCCGACGCTGCAAAAACCATAACCAAATCAGACGAAGCACAAAAAAGCATTAATAATGATGCTAAATACAGCAAGAATAAGCTGCACCACAGAATTGCCGATGGCTTTGTCGACGCCTTTCGCCCCACCACCCCCGGCCATAGTCCCGGCGTTGGTCACTCCATTCAAAACCGATAA

Protein sequence

MGSAQFLTYLFVLMILSHQLVLIEGRRLKVKKNGLRCGNCMTPDAAKTITKSDEAQKSINNDAKYSKNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQNR

Homology

[Close]

BLAST of Lsi01G009890 vs. ExPASy Swiss-Prot
Match: B3H5A9 (Precursor of CEP6 OS=Arabidopsis thaliana OX=3702 GN=CEP6 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 67  KNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 100
           K K +   A G+ D F PTTPGHSPGVGH+++N
Sbjct: 64  KMKENEENAGGYKDDFEPTTPGHSPGVGHAVKN 96

[Close]

BLAST of Lsi01G009890 vs. ExPASy TrEMBL
Match: A0A0A0KIB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.8e-32
Identity = 75/101 (74.26%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MGSAQFLTYLFVLMILSHQLVLIEGRRLKVKKNGLRCGNCMTPDAAKTITKS-DEAQKSI 60
           M + + LTY F+ +ILSH LV+IEGRRLKVKKNGLRCG CMTP   KTITKS +EAQKS 
Sbjct: 1   MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61  NNDAKYSKNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQNR 101
           N       NKLHHRIADG+VDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61  N-------NKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of Lsi01G009890 vs. ExPASy TrEMBL
Match: A0A5D3CP07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004920 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.5e-31
Identity = 73/101 (72.28%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MGSAQFLTYLFVLMILSHQLVLIEGRRLKVKKNGLRCGNCMTPDAAKTITKS-DEAQKSI 60
           M + + LTY F+ +ILSH LV+IEGRRLKV K GLRCG CMTP   KTITKS +EAQKSI
Sbjct: 1   MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60

Query: 61  NNDAKYSKNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQNR 101
           N        KLHHRIADG+VDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61  N-------KKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of Lsi01G009890 vs. ExPASy TrEMBL
Match: A0A314Z944 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_35999 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 11  FVLMILSHQLVLIEGRRLKVKKNGLRCGNCMTPDAAKTITKSDEAQKSINNDAKYSKNKL 70
           F+LMI SH+L+ IEGR +KV K+ L+C  C++PDA    T++ EA         Y ++ +
Sbjct: 12  FLLMIFSHELICIEGRNVKVNKD-LKCVKCLSPDAK---TRAGEA---------YGEHTV 71

Query: 71  HHRIADGFVDAFRPTTPGHSPGVGHSIQN 100
               + G V+AFRPTTPGHSPGVGH++ N
Sbjct: 72  AESPSPGHVEAFRPTTPGHSPGVGHAVHN 87

[Close]

BLAST of Lsi01G009890 vs. ExPASy TrEMBL
Match: V4SPP4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 1  MGSAQFLTYLFVLMILSHQLVLIEGRRLKVKKNGLRCGNC-MTPDAAKTITKSDEAQKSI 60
          M +       F+LMI SH+L  +EGR LK+ K+ L+C  C ++PD     +KS    +  
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKISKS-LKCAKCLLSPDGQ---SKSKPIARDT 60

Query: 61 NN-DAKYSKNKLHH--RIADGFVDAFRPTTPGHSPGVGH 96
          NN DA  S + LHH  +  +GFVDAFRPTTPGHSPGVGH
Sbjct: 61 NNHDA--SPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of Lsi01G009890 vs. ExPASy TrEMBL
Match: A0A067GI40 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045305mg PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1  MGSAQFLTYLFVLMILSHQLVLIEGRRLKVKKNGLRCGNC-MTPDAAKTITKSDEAQKSI 60
          M +       F+LMI SH+L  +EGR LK+ K+ L+C  C ++PD          A+ + 
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKISKS-LKCAKCLLSPDGQSKF--KPIARDTN 60

Query: 61 NNDAKYSKNKLHH--RIADGFVDAFRPTTPGHSPGVGH 96
          N+DA  S + LHH  +  +GFVDAFRPTTPGHSPGVGH
Sbjct: 61 NHDA--SPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of Lsi01G009890 vs. NCBI nr
Match: KGN48514.1 (hypothetical protein Csa_002922 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 8.0e-32
Identity = 75/101 (74.26%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MGSAQFLTYLFVLMILSHQLVLIEGRRLKVKKNGLRCGNCMTPDAAKTITKS-DEAQKSI 60
           M + + LTY F+ +ILSH LV+IEGRRLKVKKNGLRCG CMTP   KTITKS +EAQKS 
Sbjct: 1   MAATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKST 60

Query: 61  NNDAKYSKNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQNR 101
           N       NKLHHRIADG+VDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61  N-------NKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of Lsi01G009890 vs. NCBI nr
Match: TYK12898.1 (hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 2.0e-30
Identity = 73/101 (72.28%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MGSAQFLTYLFVLMILSHQLVLIEGRRLKVKKNGLRCGNCMTPDAAKTITKS-DEAQKSI 60
           M + + LTY F+ +ILSH LV+IEGRRLKV K GLRCG CMTP   KTITKS +EAQKSI
Sbjct: 1   MAATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSI 60

Query: 61  NNDAKYSKNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQNR 101
           N        KLHHRIADG+VDAFRPTTPGHSPGVGHSIQNR
Sbjct: 61  N-------KKLHHRIADGYVDAFRPTTPGHSPGVGHSIQNR 94

[Close]

BLAST of Lsi01G009890 vs. NCBI nr
Match: KAG6604188.1 (Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-24
Identity = 68/97 (70.10%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 3   SAQFLTYLFVLMILSHQLVLIEGRRLKVKKNGLRCGNCMTPDAAKTITKSDEAQKSINND 62
           +  FLTY F  +ILSHQLVLIE R LKV        N + PD  KTIT S E Q SINND
Sbjct: 2   ATHFLTYFFAFLILSHQLVLIEARSLKV--------NSINPDTPKTITNS-EPQNSINND 61

Query: 63  AKYSKNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 100
           AK +K KLHHRIADGFVDAFRPTTPGHSPGVGHSIQN
Sbjct: 62  AKNTK-KLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 88

[Close]

BLAST of Lsi01G009890 vs. NCBI nr
Match: PQQ18182.1 (hypothetical protein Pyn_35999 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 11  FVLMILSHQLVLIEGRRLKVKKNGLRCGNCMTPDAAKTITKSDEAQKSINNDAKYSKNKL 70
           F+LMI SH+L+ IEGR +KV K+ L+C  C++PDA    T++ EA         Y ++ +
Sbjct: 12  FLLMIFSHELICIEGRNVKVNKD-LKCVKCLSPDAK---TRAGEA---------YGEHTV 71

Query: 71  HHRIADGFVDAFRPTTPGHSPGVGHSIQN 100
               + G V+AFRPTTPGHSPGVGH++ N
Sbjct: 72  AESPSPGHVEAFRPTTPGHSPGVGHAVHN 87

[Close]

BLAST of Lsi01G009890 vs. NCBI nr
Match: ESR39096.1 (hypothetical protein CICLE_v10027106mg [Citrus clementina])

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-11
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 1  MGSAQFLTYLFVLMILSHQLVLIEGRRLKVKKNGLRCGNC-MTPDAAKTITKSDEAQKSI 60
          M +       F+LMI SH+L  +EGR LK+ K+ L+C  C ++PD     +KS    +  
Sbjct: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKISKS-LKCAKCLLSPDGQ---SKSKPIARDT 60

Query: 61 NN-DAKYSKNKLHH--RIADGFVDAFRPTTPGHSPGVGH 96
          NN DA  S + LHH  +  +GFVDAFRPTTPGHSPGVGH
Sbjct: 61 NNHDA--SPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of Lsi01G009890 vs. TAIR 10
Match: AT5G66816.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 67  KNKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 100
           K K +   A G+ D F PTTPGHSPGVGH+++N
Sbjct: 64  KMKENEENAGGYKDDFEPTTPGHSPGVGHAVKN 96

[Close]

BLAST of Lsi01G009890 vs. TAIR 10
Match: AT2G23440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 0


Query: 79  VDAFRPTTPGHSPGVGHSIQN 100
           VD FRPT PGHSPG+GHS+ N
Sbjct: 62  VDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Lsi01G009890 vs. TAIR 10
Match: AT3G50610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 80  DAFRPTTPGHSPGVGHSIQN 100
           D F+PTTPGHSPGVGH+++N
Sbjct: 205 DDFKPTTPGHSPGVGHAVKN 224

The following BLAST results are available for this feature:

BLAST of Lsi01G009890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H5A9	3.3e-04	57.58	Precursor of CEP6 OS=Arabidopsis thaliana OX=3702 GN=CEP6 PE=1 SV=1	[more]

BLAST of Lsi01G009890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIB5	3.8e-32	74.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1	[more]
A0A5D3CP07	9.5e-31	72.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A314Z944	1.3e-11	47.19	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_359...	[more]
V4SPP4	2.2e-11	48.48	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=3 ...	[more]
A0A067GI40	2.9e-11	46.94	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045305mg PE=3 SV=1	[more]

BLAST of Lsi01G009890 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48514.1	8.0e-32	74.26	hypothetical protein Csa_002922 [Cucumis sativus]	[more]
TYK12898.1	2.0e-30	72.28	hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa]	[more]
KAG6604188.1	2.1e-24	70.10	Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
PQQ18182.1	2.7e-11	47.19	hypothetical protein Pyn_35999 [Prunus yedoensis var. nudiflora]	[more]
ESR39096.1	4.5e-11	48.48	hypothetical protein CICLE_v10027106mg [Citrus clementina]	[more]

BLAST of Lsi01G009890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66816.1	2.3e-05	57.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G23440.1	1.2e-04	76.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G50610.1	4.4e-04	75.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..100
None	No IPR available	PANTHER	PTHR33348:SF28	PRECURSOR OF CEP7	coord: 6..99
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 6..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G009890.1	Lsi01G009890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902025	nitrate import
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:2000280	regulation of root development
biological_process	GO:0007165	signal transduction
biological_process	GO:0048364	root development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005179	hormone activity