Lsi01G009560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G009560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein RER1
Location	chr01: 7763021 .. 7764514 (+)
RNA-Seq Expression	Lsi01G009560
Synteny	Lsi01G009560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTTCCTATAAAACATATTGTTACAATTACTGAGCATCTTAGCTTCATTATAGAACCTCGGGATTTTGATGTTTCTTTTTACAACGTTTCTAATTGTTTGCAGTTTTCTTAATGTTGTTCTCAACCTTCATCTCCCACATTTATATAATTTTCTGCAGCATTAAAACTATTGGATAGGATCGATCCTTAAGCTATTAGACCTTGAATTTTAATCCCCAAAGCAAAAATACTCGAAAGAAAGTTTCCCATAATGCAATATTATTAGCAAATCCTCTGTTTATTTGCATACTGATGGCCTGTATTTAGCAAGGTTTAGTTCCAACACAACTAAATGCCTAATATACTAAAAGTTCTTTATAAAAAAGAATATCTTCCATCAAATTTAATGAAATAGAAAAGATTCCATAGACTTGAATTGGGCTTTATCCTTATTATGGAGTTGTTTGCCAATGGTTATAAATTATAATGGGGCATGTAGACATTCAATCTAGCGATAATTGTGGACAACCACATTATAGCTGCCTCATCCAATAATTTTTCTTGTTTAAGCTTGTAGATCAAAATAACCATTGAAAAAAATGCTAACTTTTGGTAATGTTTCCTTCCTTTCCTCTTTCAAGGTACTCTATCACAAAAGCCTTTTGTATTGCTTTTGTGATGACATTCTTTAGTGCATTTGATGTGCCTGTATTTTGGCCTATCCTTCTATTTTACTGGGTGGTGCTGTTCACTCTCACCATGCGGAGACAGATAGTGCACATGATCAAATATAAATATGTCCCGTTCTCGTTTGGTAAACAGGTAAATTTCTTTTCAGAGTCTGTGTTTTCTCAGTTTCCTTAGTTTTCCATCCATCATGTTCTTGCAATTATAAACTAAAAATTTTATCTACTTCTTGATAGCGATATGATGGAAAGGCTGCTGCTCAAAGCGACACTAAGAGCCTTCTGAAGGATTGAACTATTTGGATAGAACTGCTAAACTCTTTTTATTCTGTTAAGTAGAACTGCTAAACTCTTTTTATTCTGCTGTATTCTTGTTCATAGTTAGTTCTACATGAGGAGAAGGTGGTAAGAGATAATTGTAATGAAGATAAGTTAGGCTGATCATTTGTTGGTTCTTCATTTCCCCTGATCTTTGTACTTCTTTGGATGTTCCTATGGAAAATCAAGTTTCAGGAAGATATTATGGTTGCTGAATTGTTCCCTTCTCTCCATGACATATTTTTTAGTTGTAAAGATGGAAAAATTACTGTAGTCTCAATCACCTGTAAGAAAACCTAAATTAAAACCATCTAATTTTTTAGAGCTTGTTGTACTAAGAAGCCATTTCTGAAGTAGAAAGAAAAAGAAAAAGAAAGAACAGAGGAGGGATAAAAGCCACTGGTTTTGTTAGGCAAGAACGATCTCAGATTTTACCATAAGGATTTTTGTCCTTTTTTTAGTAGGAATTGGGAGATTTGAACCTTCGACTTCAAAGAAAGTAATTT

mRNA sequence

ATGATGTACTCTATCACAAAAGCCTTTTGTATTGCTTTTGTGATGACATTCTTTAGTGCATTTGATGTGCCTGTATTTTGGCCTATCCTTCTATTTTACTGGGTGGTGCTGTTCACTCTCACCATGCGGAGACAGATAGTGCACATGATCAAATATAAATATGTCCCGTTCTCGTTTGGTAAACAGCGATATGATGGAAAGGCTGCTGCTCAAAGCGACACTAAGAGCCTTCTGAAGGATTGAACTATTTGGATAGAACTGCTAAACTCTTTTTATTCTGTTAAGTAGAACTGCTAAACTCTTTTTATTCTGCTGTATTCTTGTTCATAGTTAGTTCTACATGAGGAGAAGGTGGTAAGAGATAATTGTAATGAAGATAAGTTAGGCTGATCATTTGTTGGTTCTTCATTTCCCCTGATCTTTGTACTTCTTTGGATGTTCCTATGGAAAATCAAGTTTCAGGAAGATATTATGGTTGCTGAATTGTTCCCTTCTCTCCATGACATATTTTTTAGTTGTAAAGATGGAAAAATTACTGTAGTCTCAATCACCTGTAAGAAAACCTAAATTAAAACCATCTAATTTTTTAGAGCTTGTTGTACTAAGAAGCCATTTCTGAAGTAGAAAGAAAAAGAAAAAGAAAGAACAGAGGAGGGATAAAAGCCACTGGTTTTGTTAGGCAAGAACGATCTCAGATTTTACCATAAGGATTTTTGTCCTTTTTTTAGTAGGAATTGGGAGATTTGAACCTTCGACTTCAAAGAAAGTAATTT

Coding sequence (CDS)

ATGATGTACTCTATCACAAAAGCCTTTTGTATTGCTTTTGTGATGACATTCTTTAGTGCATTTGATGTGCCTGTATTTTGGCCTATCCTTCTATTTTACTGGGTGGTGCTGTTCACTCTCACCATGCGGAGACAGATAGTGCACATGATCAAATATAAATATGTCCCGTTCTCGTTTGGTAAACAGCGATATGATGGAAAGGCTGCTGCTCAAAGCGACACTAAGAGCCTTCTGAAGGATTGA

Protein sequence

MMYSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQRYDGKAAAQSDTKSLLKD

Homology

[Close]

BLAST of Lsi01G009560 vs. ExPASy Swiss-Prot
Match: O48670 (Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 9.2e-26
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YS+TKAFCIAF+MTFFS FDVPVFWPILL YW+VLF LTMRRQI HMIKYKY+PFSFGKQ
Sbjct: 119 YSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQ 178

Query: 63  RYDGKAAAQS 73
           +Y G++++ S
Sbjct: 179 KYGGRSSSGS 188

[Close]

BLAST of Lsi01G009560 vs. ExPASy Swiss-Prot
Match: O48671 (Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-24
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YS+TKAFCIAF+MTFFS FDVPVFWPILL YWVVLF LTMRRQI HMIK+KY+PFS GKQ
Sbjct: 118 YSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQ 177

Query: 63  RYDGKAAA 71
           +Y G+ ++
Sbjct: 178 KYSGRKSS 185

[Close]

BLAST of Lsi01G009560 vs. ExPASy Swiss-Prot
Match: Q9ZWI7 (Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-20
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 4   SITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQR 63
           SI +AF I F+MTFF  FDVPVFWPILLFYWV+LF LTMR+QI HMIKY+YVPFSFGK++
Sbjct: 141 SIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQ 200

Query: 64  YDGKAA 70
           Y  K A
Sbjct: 201 YGKKPA 206

[Close]

BLAST of Lsi01G009560 vs. ExPASy Swiss-Prot
Match: O15258 (Protein RER1 OS=Homo sapiens OX=9606 GN=RER1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-16
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           ++ TK   +A V TFF AF+VPVFWPIL+ Y+++LF +TM+RQI HMIKY+Y+PF+ GK+
Sbjct: 123 HAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

Query: 63  RYDGKAAA 71
           RY GK  A
Sbjct: 183 RYRGKEDA 190

[Close]

BLAST of Lsi01G009560 vs. ExPASy Swiss-Prot
Match: Q5R5U4 (Protein RER1 OS=Pongo abelii OX=9601 GN=RER1 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-16
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           ++ TK   +A V TFF AF+VPVFWPIL+ Y+++LF +TM+RQI HMIKY+Y+PF+ GK+
Sbjct: 123 HAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

Query: 63  RYDGKAAA 71
           RY GK  A
Sbjct: 183 RYRGKEDA 190

[Close]

BLAST of Lsi01G009560 vs. ExPASy TrEMBL
Match: A0A6J1IRU9 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111477878 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.4e-32
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 126 YSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 185

Query: 63  RYDGKAAAQSDTKSLLKD 81
           RYDGK AA SDTKSLLKD
Sbjct: 186 RYDGKGAASSDTKSLLKD 203

[Close]

BLAST of Lsi01G009560 vs. ExPASy TrEMBL
Match: A0A6J1GCX4 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111453051 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.4e-32
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 126 YSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 185

Query: 63  RYDGKAAAQSDTKSLLKD 81
           RYDGK AA SDTKSLLKD
Sbjct: 186 RYDGKGAASSDTKSLLKD 203

[Close]

BLAST of Lsi01G009560 vs. ExPASy TrEMBL
Match: A0A6J1BTU8 (Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111005301 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.8e-31
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 128 YSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 187

Query: 63  RYDGKAAAQSDTKSLLKD 81
           RYDGK AA S+ KS+LKD
Sbjct: 188 RYDGKGAASSENKSVLKD 205

[Close]

BLAST of Lsi01G009560 vs. ExPASy TrEMBL
Match: A0A6J1HHE0 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111463557 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 126 YSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 185

Query: 63  RYDGK-AAAQSDTKSLLKD 81
           RYDGK A+A S+T +LLKD
Sbjct: 186 RYDGKGASASSETSNLLKD 204

[Close]

BLAST of Lsi01G009560 vs. ExPASy TrEMBL
Match: A0A6J1KTW6 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111497178 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.4e-29
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 126 YSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 185

Query: 63  RYDGK-AAAQSDTKSLLKD 81
           RYDGK A++ S+T +LLKD
Sbjct: 186 RYDGKGASSSSETSNLLKD 204

[Close]

BLAST of Lsi01G009560 vs. NCBI nr
Match: XP_022977598.1 (protein RER1A-like [Cucurbita maxima] >XP_022977599.1 protein RER1A-like [Cucurbita maxima])

HSP 1 Score: 147.5 bits (371), Expect = 4.9e-32
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 126 YSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 185

Query: 63  RYDGKAAAQSDTKSLLKD 81
           RYDGK AA SDTKSLLKD
Sbjct: 186 RYDGKGAASSDTKSLLKD 203

[Close]

BLAST of Lsi01G009560 vs. NCBI nr
Match: XP_023544323.1 (protein RER1A-like [Cucurbita pepo subsp. pepo] >XP_023544324.1 protein RER1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.5 bits (371), Expect = 4.9e-32
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 126 YSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 185

Query: 63  RYDGKAAAQSDTKSLLKD 81
           RYDGK AA SDTKSLLKD
Sbjct: 186 RYDGKGAASSDTKSLLKD 203

[Close]

BLAST of Lsi01G009560 vs. NCBI nr
Match: KAG7034324.1 (Protein RER1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.5 bits (371), Expect = 4.9e-32
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 126 YSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 185

Query: 63  RYDGKAAAQSDTKSLLKD 81
           RYDGK AA SDTKSLLKD
Sbjct: 186 RYDGKGAASSDTKSLLKD 203

[Close]

BLAST of Lsi01G009560 vs. NCBI nr
Match: XP_022949760.1 (protein RER1A-like [Cucurbita moschata] >XP_022949761.1 protein RER1A-like [Cucurbita moschata] >KAG6604161.1 Protein RER1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 4.9e-32
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 126 YSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 185

Query: 63  RYDGKAAAQSDTKSLLKD 81
           RYDGK AA SDTKSLLKD
Sbjct: 186 RYDGKGAASSDTKSLLKD 203

[Close]

BLAST of Lsi01G009560 vs. NCBI nr
Match: XP_038880923.1 (protein RER1A-like [Benincasa hispida] >XP_038880924.1 protein RER1A-like [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YSITKAFCIAF+MTFF+AFDVPVFWPILLFYWVVLFTLTMRRQI HMIKYKYVPFSFGKQ
Sbjct: 126 YSITKAFCIAFLMTFFNAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQ 185

Query: 63  RYDGKAAAQSDTKSLLKD 81
           RYDGK AA SDTKSLLKD
Sbjct: 186 RYDGKVAAPSDTKSLLKD 203

[Close]

BLAST of Lsi01G009560 vs. TAIR 10
Match: AT4G39220.1 (Rer1 family protein )

HSP 1 Score: 117.1 bits (292), Expect = 6.6e-27
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YS+TKAFCIAF+MTFFS FDVPVFWPILL YW+VLF LTMRRQI HMIKYKY+PFSFGKQ
Sbjct: 119 YSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQ 178

Query: 63  RYDGKAAAQS 73
           +Y G++++ S
Sbjct: 179 KYGGRSSSGS 188

[Close]

BLAST of Lsi01G009560 vs. TAIR 10
Match: AT2G21600.1 (endoplasmatic reticulum retrieval protein 1B )

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-25
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQ 62
           YS+TKAFCIAF+MTFFS FDVPVFWPILL YWVVLF LTMRRQI HMIK+KY+PFS GKQ
Sbjct: 118 YSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQ 177

Query: 63  RYDGKAAA 71
           +Y G+ ++
Sbjct: 178 KYSGRKSS 185

[Close]

BLAST of Lsi01G009560 vs. TAIR 10
Match: AT2G23310.1 (Rer1 family protein )

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-21
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 4   SITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQR 63
           SI +AF I F+MTFF  FDVPVFWPILLFYWV+LF LTMR+QI HMIKY+YVPFSFGK++
Sbjct: 141 SIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQ 200

Query: 64  YDGKAA 70
           Y  K A
Sbjct: 201 YGKKPA 206

[Close]

BLAST of Lsi01G009560 vs. TAIR 10
Match: AT2G23310.2 (Rer1 family protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-20
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 4   SITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGKQR 63
           SI +AF I F+MTFF  FDVPVFWPILLFYWV+LF LTMR+QI HMIKY+YVPFSFGK +
Sbjct: 141 SIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGK-K 200

Query: 64  YDGKAA 70
           Y  K A
Sbjct: 201 YGKKPA 205

[Close]

BLAST of Lsi01G009560 vs. TAIR 10
Match: AT2G18240.1 (Rer1 family protein )

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-17
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 3   YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIVHMIKYKYVPFSFGK 62
           Y+ TKAF +AFVMTFFS  DVPVFWPILL YW+VL++LTM+R IVHM KY+Y PF   K
Sbjct: 122 YAATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180

The following BLAST results are available for this feature:

BLAST of Lsi01G009560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48670	9.2e-26	78.57	Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1	[more]
O48671	3.0e-24	77.94	Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2	[more]
Q9ZWI7	1.5e-20	74.24	Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1	[more]
O15258	3.9e-16	58.82	Protein RER1 OS=Homo sapiens OX=9606 GN=RER1 PE=1 SV=1	[more]
Q5R5U4	3.9e-16	58.82	Protein RER1 OS=Pongo abelii OX=9601 GN=RER1 PE=2 SV=1	[more]

BLAST of Lsi01G009560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IRU9	2.4e-32	94.87	Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111477878 PE=3 SV=1	[more]
A0A6J1GCX4	2.4e-32	94.87	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111453051 PE=3 SV=1	[more]
A0A6J1BTU8	5.8e-31	91.03	Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111005301 PE=3 SV=1	[more]
A0A6J1HHE0	1.1e-29	89.87	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111463557 PE=3 SV=1	[more]
A0A6J1KTW6	2.4e-29	88.61	Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111497178 PE=3 SV=1	[more]

BLAST of Lsi01G009560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977598.1	4.9e-32	94.87	protein RER1A-like [Cucurbita maxima] >XP_022977599.1 protein RER1A-like [Cucurb...	[more]
XP_023544323.1	4.9e-32	94.87	protein RER1A-like [Cucurbita pepo subsp. pepo] >XP_023544324.1 protein RER1A-li...	[more]
KAG7034324.1	4.9e-32	94.87	Protein RER1A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022949760.1	4.9e-32	94.87	protein RER1A-like [Cucurbita moschata] >XP_022949761.1 protein RER1A-like [Cucu...	[more]
XP_038880923.1	1.4e-31	93.59	protein RER1A-like [Benincasa hispida] >XP_038880924.1 protein RER1A-like [Benin...	[more]

BLAST of Lsi01G009560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39220.1	6.6e-27	78.57	Rer1 family protein	[more]
AT2G21600.1	2.1e-25	77.94	endoplasmatic reticulum retrieval protein 1B	[more]
AT2G23310.1	1.1e-21	74.24	Rer1 family protein	[more]
AT2G23310.2	2.7e-20	74.24	Rer1 family protein	[more]
AT2G18240.1	6.2e-17	69.49	Rer1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004932	Retrieval of early ER protein Rer1	PFAM	PF03248	Rer1	coord: 3..64 e-value: 5.8E-29 score: 101.0
IPR004932	Retrieval of early ER protein Rer1	PANTHER	PTHR10743	PROTEIN RER1	coord: 2..77
None	No IPR available	PANTHER	PTHR10743:SF11	PROTEIN RER1C	coord: 2..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G009560.1	Lsi01G009560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051179	localization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle