Lsi01G009510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G009510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ADP-ribosylation factor
Location	chr01: 7725635 .. 7728148 (+)
RNA-Seq Expression	Lsi01G009510
Synteny	Lsi01G009510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTCAACGACCTAACTTTCATTTGGGTTCGCTCTTCTTCCTCCTCTTATCCCTTGCGAAGGACAAGAATTCGTCCAAGTAGTGTTCATATCGACCAGTGAATTTTTTGGTTTGAAATCTTGATCGGCAGCCATGGGAGTGGCGATATCTCGGCTTGTGAGGATGCTGTTTGCGAAGAAGGAAATGAGGATTTTAATGGTGGGTCTTGATGCTGCTGGAAAAACAACCATTCTGTATAAGTTGAAGCTTGGAGAGATTGTCACCACCATACCCACCATAGGTATCTGTTTTTTTCTAAAACGCTTTTGGTTTTGGTGCCTACGTATTTCTCTGCTGTTTTACTTTGGTTCTTCCCATGTTTAGAAATCATCTGTTTTTATTTGTAATGATTAGGTCTTATTCTTGTAAGAAGTCTTCTATTACATTTTGGTACTACAAATTTCTGTCTTTCTTTTTGTCTTGCTAATTTGAAAAATGTATGATCAACTCTCGATGTTCTAAAACAAATGTTATTGAATTGTTATATCTATGTTTTAAATAGTTGACCTATTAATGTTATTTAGGAATTAGATTGCTTAGGAAATGCCTTTAACCATTTAAAAACAATTTTGCTATAAGTAAAAGCAATTTAAAACACTGGTCCTTTTTTATTACAACTAGTGGATATGTGAGTTTGAACCTTCTACTTCAAAGGAGGAAGTACTAGGCTGAATTTGACTTTTTTTTTGTCCATCAGGTTTTAATGTGGAAACGGTTGAGTATAAGAATGTTAGCTTTACAGTGTGGGATGTTGGAGGCCAAGACAAGGTATTTTCTTCGTTTGATCATTTGAGGAACATGCTCTATAGTCTATACATATTCTAGCAAATCAACCCAATAAAGAGGTTTCTGCAGCCTGAAAAACATTCAAAATATTTAAAATTAAAAGAAAAAAAGTTTGTCACATGGCAAATTGTAATAGAACTTGGGTAAGTTACACAAAAATGGGTGCAGTCTCAGATGCATCAAGTATTTTTCTTGATTCATTGTTTTCTTGTGGATTCTATGCAGATTAGACCTCTATGGAGGCACTATTTTCAGAACACACAAGGTCTTATCTTTGTAGTGGATAGCAATGACAAAGATAGGATATCAGAAGCTAGGGATGAGCTTCATAGGATGCTTAGTGAGGTACTTAATTCTATATGCTTCTTTTTTCATGCTCCCTCACATTTCTCTTGATTTTTACCCTTCATTTTTCTTTTTCTTCTCCTTCAAGCATGAACTGGTTGATGCAACTGTGCTCGTGTTTGCGAACAAGCAAGACCTTCCAAATGCTATGACTGTTGCTGAAATCACTGATAAACTCGGCCTTCACTCACTCCGACATCGTCGCTGGTATATAAATATATCTCTCTTTAGAATCACGTAGCTGTTCTCCATATTTATAATCTTTTCATGACCTTATTCCCTATGATGGCATCTCGACAATACCAATTTTCAGAATCTTTTGAACTTTCATGTAACAAGTTTAGCAAGGTTTTTCTATCAATCTCCTAGCCGAAGCTTGACTAAAAAGGGCTTGTGTTCAACCCCGCGGGTTAGCTGGTTGGAAGGCGAGGGAATTAATCATTTTTTTTAAGTTTAAGGGCGGGGTGTACTTTTTGCTTCTTTTCTAAGCATATTTCGAACGAGAACTTAACTATAGCCAATGTAGAAAGAGTTTCTTCTAATTTTCTTATATGGTCCGTTTTGTAACTTCATTATTATCTTATTCAATAGATATGTGAGATACCAATGATATTTCTTATTCAGTCAAAATAGACCACCTCAAAGACTTAGGTAGACCCCTTTTCTTTTATTTTGAATATTACTGAAACATAGAGATGAGTGATGCAGGTACATCCAGGCTACTTGTGCCACTTCAGGCCAAGGATTGTATGAAGGTCTTGACTGGCTGTCTAGCAATATCTCAAACAAGGCAAGTTCCAGAGCTAATAAGCTTCCTGTATATTTCCCGTAAAGCTTAATGGGATTCTTAGTTGGACTGGACTGAAAACAGAATATATACACTCAAAACTAACGGGTTGTTTTGTACCTTTTCTTGCAGGCCTAATCTCAGTTGTTTTGATAAACATCTTGGGGGAAAGCTCTTTTAAGTGAAGCCACAAGGAAAACCTAAATATGTAACAGATACCTGTGCACTCAGATCTGCAGTGTTTGTACTCTCATATTTTTGTGTAAAGTTTTGGTTTTAGATTCAAGAAAAATATGTACAAAAGCAGGGATGCTACTCCTATACCATGGTGAACGATAATAACGAAAATTTCACAAATAAATGTTGTTCATAAATGTGGATCTTGTTGTAACGGTAAAATCCATTACCATTGATCAGAGAGTTTTCTGTGATCTTCATTATCTCAGGAGGATTCCTTGTCCAAACTTTTGTACTCTTTCACTGTTAAAGGTTTTGTTGTTGTTTCTTATCACCGAGGTTGGTGCCCCATGTATTCTTGGAAGAATATCGTCATTAAT

mRNA sequence

CACTCAACGACCTAACTTTCATTTGGGTTCGCTCTTCTTCCTCCTCTTATCCCTTGCGAAGGACAAGAATTCGTCCAAGTAGTGTTCATATCGACCAGTGAATTTTTTGGTTTGAAATCTTGATCGGCAGCCATGGGAGTGGCGATATCTCGGCTTGTGAGGATGCTGTTTGCGAAGAAGGAAATGAGGATTTTAATGGTGGGTCTTGATGCTGCTGGAAAAACAACCATTCTGTATAAGTTGAAGCTTGGAGAGATTGTCACCACCATACCCACCATAGTGTGGGATGTTGGAGGCCAAGACAAGCATGAACTGGTTGATGCAACTGTGCTCGTGTTTGCGAACAAGCAAGACCTTCCAAATGCTATGACTGTTGCTGAAATCACTGATAAACTCGGCCTTCACTCACTCCGACATCGTCGCTGGTACATCCAGGCTACTTGTGCCACTTCAGGCCAAGGATTGTATGAAGGTCTTGACTGGCTGTCTAGCAATATCTCAAACAAGGCCTAATCTCAGTTGTTTTGATAAACATCTTGGGGGAAAGCTCTTTTAAGTGAAGCCACAAGGAAAACCTAAATATGTAACAGATACCTGTGCACTCAGATCTGCAGTGTTTGTACTCTCATATTTTTGTGTAAAGTTTTGGTTTTAGATTCAAGAAAAATATGTACAAAAGCAGGGATGCTACTCCTATACCATGGTGAACGATAATAACGAAAATTTCACAAATAAATGTTGTTCATAAATGTGGATCTTGTTGTAACGGTAAAATCCATTACCATTGATCAGAGAGTTTTCTGTGATCTTCATTATCTCAGGAGGATTCCTTGTCCAAACTTTTGTACTCTTTCACTGTTAAAGGTTTTGTTGTTGTTTCTTATCACCGAGGTTGGTGCCCCATGTATTCTTGGAAGAATATCGTCATTAAT

Coding sequence (CDS)

ATGGGAGTGGCGATATCTCGGCTTGTGAGGATGCTGTTTGCGAAGAAGGAAATGAGGATTTTAATGGTGGGTCTTGATGCTGCTGGAAAAACAACCATTCTGTATAAGTTGAAGCTTGGAGAGATTGTCACCACCATACCCACCATAGTGTGGGATGTTGGAGGCCAAGACAAGCATGAACTGGTTGATGCAACTGTGCTCGTGTTTGCGAACAAGCAAGACCTTCCAAATGCTATGACTGTTGCTGAAATCACTGATAAACTCGGCCTTCACTCACTCCGACATCGTCGCTGGTACATCCAGGCTACTTGTGCCACTTCAGGCCAAGGATTGTATGAAGGTCTTGACTGGCTGTCTAGCAATATCTCAAACAAGGCCTAA

Protein sequence

MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIVWDVGGQDKHELVDATVLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNKA

Homology

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BLAST of Lsi01G009510 vs. ExPASy Swiss-Prot
Match: P51823 (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF PE=2 SV=2)

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-46
Identity = 106/181 (58.56%), Postives = 114/181 (62.98%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG+  ++L   LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           +LVFANKQDLPNAM  AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS+NI+NK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

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BLAST of Lsi01G009510 vs. ExPASy Swiss-Prot
Match: O48649 (ADP-ribosylation factor 1 OS=Salix bakko OX=72444 GN=ARF1 PE=2 SV=3)

HSP 1 Score: 184.9 bits (468), Expect = 5.7e-46
Identity = 105/181 (58.01%), Postives = 116/181 (64.09%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG++ ++L+  LF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           +LVFANKQDLPNAM  AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS+NIS+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180

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BLAST of Lsi01G009510 vs. ExPASy Swiss-Prot
Match: P36579 (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=arf1 PE=2 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 5.7e-46
Identity = 104/180 (57.78%), Postives = 115/180 (63.89%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG++IS+L + LF K+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 126
           +LVFANKQDLPNAM  AEITDKLGLHSLRHR+WYIQATCATSG GLYEGL+WLS+N+ N+
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180

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BLAST of Lsi01G009510 vs. ExPASy Swiss-Prot
Match: P36397 (ADP-ribosylation factor 1 OS=Arabidopsis thaliana OX=3702 GN=ARF1 PE=1 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 9.7e-46
Identity = 105/181 (58.01%), Postives = 114/181 (62.98%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG++  +L   LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           +LVFANKQDLPNAM  AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS+NI++K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

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BLAST of Lsi01G009510 vs. ExPASy Swiss-Prot
Match: Q06396 (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 184.1 bits (466), Expect = 9.7e-46
Identity = 105/181 (58.01%), Postives = 114/181 (62.98%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG+  ++L   LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           +LVFANKQDLPNAM  AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS+NI++K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

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BLAST of Lsi01G009510 vs. ExPASy TrEMBL
Match: A0A6J1BUS7 (ADP-ribosylation factor 2-like OS=Momordica charantia OX=3673 GN=LOC111005942 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 125/181 (69.06%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           VLVFANKQDLPNAMTVAEITDKLGLHSLR+RRWYIQATCATSGQGLYEGLDWLSSNISNK
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISNK 180

[Close]

BLAST of Lsi01G009510 vs. ExPASy TrEMBL
Match: A0A6J1KPF3 (ADP-ribosylation factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497095 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.9e-53
Identity = 123/180 (68.33%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG+AISRLVRMLFAKKEMRILMVGLDA+GKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGMAISRLVRMLFAKKEMRILMVGLDASGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDKDRISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 126
           VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 180

[Close]

BLAST of Lsi01G009510 vs. ExPASy TrEMBL
Match: A0A6J1HEL2 (ADP-ribosylation factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111463493 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.9e-53
Identity = 123/180 (68.33%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG+AISRLVRMLFAKKEMRILMVGLDA+GKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGMAISRLVRMLFAKKEMRILMVGLDASGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDKDRISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 126
           VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 180

[Close]

BLAST of Lsi01G009510 vs. ExPASy TrEMBL
Match: A0A5D3CND0 (ADP-ribosylation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004540 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.5e-53
Identity = 124/181 (68.51%), Postives = 125/181 (69.06%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           VLVFANKQDLPNAMTVAEITDKLGLHSLR+RRWYIQATCATSGQGLYEGLDWLSSNIS K
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISTK 180

[Close]

BLAST of Lsi01G009510 vs. ExPASy TrEMBL
Match: A0A0A0KID8 (ADP-ribosylation factor, arf OS=Cucumis sativus OX=3659 GN=Csa_6G491660 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.5e-53
Identity = 124/181 (68.51%), Postives = 125/181 (69.06%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           VLVFANKQDLPNAMTVAEITDKLGLHSLR+RRWYIQATCATSGQGLYEGLDWLSSNIS K
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISTK 180

[Close]

BLAST of Lsi01G009510 vs. NCBI nr
Match: XP_038883646.1 (ADP-ribosylation factor 2-like [Benincasa hispida])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 125/181 (69.06%), Postives = 125/181 (69.06%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MGVAISR VRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGVAISRFVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 180

[Close]

BLAST of Lsi01G009510 vs. NCBI nr
Match: XP_022133335.1 (ADP-ribosylation factor 2-like [Momordica charantia] >XP_022133336.1 ADP-ribosylation factor 2-like [Momordica charantia])

HSP 1 Score: 218.8 bits (556), Expect = 2.7e-53
Identity = 125/181 (69.06%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           VLVFANKQDLPNAMTVAEITDKLGLHSLR+RRWYIQATCATSGQGLYEGLDWLSSNISNK
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISNK 180

[Close]

BLAST of Lsi01G009510 vs. NCBI nr
Match: XP_022963212.1 (ADP-ribosylation factor 1-like [Cucurbita moschata] >XP_023003501.1 ADP-ribosylation factor 1-like [Cucurbita maxima] >XP_023518902.1 ADP-ribosylation factor 1-like [Cucurbita pepo subsp. pepo] >KAG6595012.1 ADP-ribosylation factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.6 bits (553), Expect = 6.0e-53
Identity = 123/180 (68.33%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG+AISRLVRMLFAKKEMRILMVGLDA+GKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGMAISRLVRMLFAKKEMRILMVGLDASGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDKDRISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 126
           VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 180

[Close]

BLAST of Lsi01G009510 vs. NCBI nr
Match: TYK12862.1 (ADP-ribosylation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 124/181 (68.51%), Postives = 125/181 (69.06%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           VLVFANKQDLPNAMTVAEITDKLGLHSLR+RRWYIQATCATSGQGLYEGLDWLSSNIS K
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISTK 180

[Close]

BLAST of Lsi01G009510 vs. NCBI nr
Match: XP_004141900.1 (ADP-ribosylation factor 1 [Cucumis sativus] >XP_008440319.1 PREDICTED: ADP-ribosylation factor 1-like isoform X1 [Cucumis melo] >KGN48554.1 hypothetical protein Csa_004375 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 124/181 (68.51%), Postives = 125/181 (69.06%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                        HELVDAT
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           VLVFANKQDLPNAMTVAEITDKLGLHSLR+RRWYIQATCATSGQGLYEGLDWLSSNIS K
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISTK 180

[Close]

BLAST of Lsi01G009510 vs. TAIR 10
Match: AT3G62290.1 (ADP-ribosylation factor A1E )

HSP 1 Score: 186.0 bits (471), Expect = 1.8e-47
Identity = 106/181 (58.56%), Postives = 114/181 (62.98%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG++  +L   LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLSFGKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           +LVFANKQDLPNAM  AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS+NI+NK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

[Close]

BLAST of Lsi01G009510 vs. TAIR 10
Match: AT3G62290.2 (ADP-ribosylation factor A1E )

HSP 1 Score: 186.0 bits (471), Expect = 1.8e-47
Identity = 106/181 (58.56%), Postives = 114/181 (62.98%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG++  +L   LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLSFGKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           +LVFANKQDLPNAM  AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS+NI+NK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

[Close]

BLAST of Lsi01G009510 vs. TAIR 10
Match: AT3G62290.3 (ADP-ribosylation factor A1E )

HSP 1 Score: 186.0 bits (471), Expect = 1.8e-47
Identity = 106/181 (58.56%), Postives = 114/181 (62.98%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG++  +L   LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLSFGKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           +LVFANKQDLPNAM  AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS+NI+NK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

[Close]

BLAST of Lsi01G009510 vs. TAIR 10
Match: AT1G10630.1 (ADP-ribosylation factor A1F )

HSP 1 Score: 184.5 bits (467), Expect = 5.3e-47
Identity = 105/181 (58.01%), Postives = 115/181 (63.54%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG++ ++L   LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           +LVFANKQDLPNAM  AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS+NI++K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

[Close]

BLAST of Lsi01G009510 vs. TAIR 10
Match: AT1G70490.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 184.1 bits (466), Expect = 6.9e-47
Identity = 105/181 (58.01%), Postives = 114/181 (62.98%), Query Frame = 0


Query: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI----------- 60
           MG++ ++L   LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI           
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ----VWDVGGQDK----------------------------------------HELVDAT 120
               VWDVGGQDK                                         EL DA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRHRRWYIQATCATSGQGLYEGLDWLSSNISNK 127
           +LVFANKQDLPNAM  AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS+NI+ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

The following BLAST results are available for this feature:

BLAST of Lsi01G009510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51823	2.6e-46	58.56	ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF PE=2 S...	[more]
O48649	5.7e-46	58.01	ADP-ribosylation factor 1 OS=Salix bakko OX=72444 GN=ARF1 PE=2 SV=3	[more]
P36579	5.7e-46	57.78	ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)...	[more]
P36397	9.7e-46	58.01	ADP-ribosylation factor 1 OS=Arabidopsis thaliana OX=3702 GN=ARF1 PE=1 SV=2	[more]
Q06396	9.7e-46	58.01	ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g08134...	[more]

BLAST of Lsi01G009510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BUS7	1.3e-53	69.06	ADP-ribosylation factor 2-like OS=Momordica charantia OX=3673 GN=LOC111005942 PE...	[more]
A0A6J1KPF3	2.9e-53	68.33	ADP-ribosylation factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497095 PE=3 ...	[more]
A0A6J1HEL2	2.9e-53	68.33	ADP-ribosylation factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111463493 PE=...	[more]
A0A5D3CND0	6.5e-53	68.51	ADP-ribosylation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KID8	6.5e-53	68.51	ADP-ribosylation factor, arf OS=Cucumis sativus OX=3659 GN=Csa_6G491660 PE=3 SV=...	[more]

BLAST of Lsi01G009510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883646.1	1.2e-53	69.06	ADP-ribosylation factor 2-like [Benincasa hispida]	[more]
XP_022133335.1	2.7e-53	69.06	ADP-ribosylation factor 2-like [Momordica charantia] >XP_022133336.1 ADP-ribosyl...	[more]
XP_022963212.1	6.0e-53	68.33	ADP-ribosylation factor 1-like [Cucurbita moschata] >XP_023003501.1 ADP-ribosyla...	[more]
TYK12862.1	1.3e-52	68.51	ADP-ribosylation factor 1 [Cucumis melo var. makuwa]	[more]
XP_004141900.1	1.3e-52	68.51	ADP-ribosylation factor 1 [Cucumis sativus] >XP_008440319.1 PREDICTED: ADP-ribos...	[more]

BLAST of Lsi01G009510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62290.1	1.8e-47	58.56	ADP-ribosylation factor A1E	[more]
AT3G62290.2	1.8e-47	58.56	ADP-ribosylation factor A1E	[more]
AT3G62290.3	1.8e-47	58.56	ADP-ribosylation factor A1E	[more]
AT1G10630.1	5.3e-47	58.01	ADP-ribosylation factor A1F	[more]
AT1G70490.1	6.9e-47	58.01	Ras-related small GTP-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..126 e-value: 1.0E-56 score: 204.4
None	No IPR available	PANTHER	PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	coord: 58..126
None	No IPR available	PANTHER	PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	coord: 1..53
None	No IPR available	PANTHER	PTHR11711:SF392	ADP-RIBOSYLATION FACTOR 1	coord: 58..126 coord: 1..53
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 58..122 e-value: 2.1E-19 score: 69.7 coord: 7..52 e-value: 1.0E-13 score: 51.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 3..56 e-value: 1.3E-14 score: 55.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 57..126 e-value: 1.7E-27 score: 98.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 14..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G009510.1	Lsi01G009510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding