Lsi01G009450 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G009450
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 7664825 .. 7665133 (-)
RNA-Seq ExpressionLsi01G009450
SyntenyLsi01G009450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAACAGAGAAACGCCGAATCTAAATTCGCCGGCGATGCCCAGCCTCAGGATCTCCTCTTTATTTCTAATCATCCTGCTAATGGCCTCCCCACGGTTATTTCTTCTTCTAGATTGCAGACCGCTCCGGCCCGGTTCAACAATCGAGCGCCACCCTGTTCATAATGCCTCGGCTATTGCCGCCCACAACCCGGAAACAGCTGTATCGCCGCCGATAGATTCCGGTAGCAGCCGGATCGGAGGCGACGACGGCGGCGTAGCTTTTACTTTTGCTTCGGGGCCCAGCAGAAAGGGTGCTGGCCATTAA

mRNA sequence

ATGCCGAACAGAGAAACGCCGAATCTAAATTCGCCGGCGATGCCCAGCCTCAGGATCTCCTCTTTATTTCTAATCATCCTGCTAATGGCCTCCCCACGGTTATTTCTTCTTCTAGATTGCAGACCGCTCCGGCCCGGTTCAACAATCGAGCGCCACCCTGTTCATAATGCCTCGGCTATTGCCGCCCACAACCCGGAAACAGCTGTATCGCCGCCGATAGATTCCGGTAGCAGCCGGATCGGAGGCGACGACGGCGGCGTAGCTTTTACTTTTGCTTCGGGGCCCAGCAGAAAGGGTGCTGGCCATTAA

Coding sequence (CDS)

ATGCCGAACAGAGAAACGCCGAATCTAAATTCGCCGGCGATGCCCAGCCTCAGGATCTCCTCTTTATTTCTAATCATCCTGCTAATGGCCTCCCCACGGTTATTTCTTCTTCTAGATTGCAGACCGCTCCGGCCCGGTTCAACAATCGAGCGCCACCCTGTTCATAATGCCTCGGCTATTGCCGCCCACAACCCGGAAACAGCTGTATCGCCGCCGATAGATTCCGGTAGCAGCCGGATCGGAGGCGACGACGGCGGCGTAGCTTTTACTTTTGCTTCGGGGCCCAGCAGAAAGGGTGCTGGCCATTAA

Protein sequence

MPNRETPNLNSPAMPSLRISSLFLIILLMASPRLFLLLDCRPLRPGSTIERHPVHNASAIAAHNPETAVSPPIDSGSSRIGGDDGGVAFTFASGPSRKGAGH
Homology
BLAST of Lsi01G009450 vs. ExPASy TrEMBL
Match: A0A5D3CR30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004480 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.0e-27
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 1   MPNRETPNLNSPAMPSLRISSLFLIILLMASPRLFLLLDCRPLRPGSTIERHPVHNASAI 60
           M   E PNLNSPAMP+ RISS  LIILLMA+PR FL +DCRPLRPGS I+RH VHNASAI
Sbjct: 1   MLKTEMPNLNSPAMPNYRISSFLLIILLMAAPRFFLSVDCRPLRPGSPIDRHHVHNASAI 60

Query: 61  AAHNPET--AVSPPIDSGSSRIGGDDGGVAFTFASGPSRKGAGH 103
               PET  A +  IDSG  RIG + GGVAFT ASGPSRKGAGH
Sbjct: 61  PHDGPETQKAATALIDSGGRRIGDEGGGVAFTMASGPSRKGAGH 104

BLAST of Lsi01G009450 vs. NCBI nr
Match: TYK12856.1 (hypothetical protein E5676_scaffold255G004480 [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.0e-26
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 1   MPNRETPNLNSPAMPSLRISSLFLIILLMASPRLFLLLDCRPLRPGSTIERHPVHNASAI 60
           M   E PNLNSPAMP+ RISS  LIILLMA+PR FL +DCRPLRPGS I+RH VHNASAI
Sbjct: 1   MLKTEMPNLNSPAMPNYRISSFLLIILLMAAPRFFLSVDCRPLRPGSPIDRHHVHNASAI 60

Query: 61  AAHNPET--AVSPPIDSGSSRIGGDDGGVAFTFASGPSRKGAGH 103
               PET  A +  IDSG  RIG + GGVAFT ASGPSRKGAGH
Sbjct: 61  PHDGPETQKAATALIDSGGRRIGDEGGGVAFTMASGPSRKGAGH 104

BLAST of Lsi01G009450 vs. NCBI nr
Match: KAE8647506.1 (hypothetical protein Csa_003725 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 66/106 (62.26%), Postives = 78/106 (73.58%), Query Frame = 0

Query: 1   MPNRETPNLNSPAMPSLRISSLFLIILLMASPRLFLLLDCRPLRPGSTIERHPVHNASAI 60
           MP+ E PNL SP M + RISS  LII L+A+PR FL +DCRPLRPGS I+RH VH+ ++ 
Sbjct: 1   MPHTEMPNLYSPPMLNPRISSFLLIIFLIAAPRFFLYVDCRPLRPGSPIDRHHVHDNASA 60

Query: 61  AAHN--PET--AVSPPIDSGSSRIGGDDGGVAFTFASGPSRKGAGH 103
             HN  PET  A + PIDSG+  IG + GGVAFT ASGPSRKGAGH
Sbjct: 61  LPHNAPPETQKAATAPIDSGAPPIGDEGGGVAFTMASGPSRKGAGH 106

BLAST of Lsi01G009450 vs. NCBI nr
Match: KAG6604156.1 (hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 0

Query: 8   NLNSPAMPSLRISSLFLIILLMASPRLFLLLDCRPLRPGSTIERHPVHNASAIAAHNPET 67
           NLNSPAMP ++ SSL LI++LMA+ R   L+DCRPLR GSTIE    +N SAI+  + E 
Sbjct: 5   NLNSPAMPKMKNSSLLLIMVLMAATRFLPLVDCRPLRSGSTIEHQRTNNGSAIS--SSEI 64

Query: 68  AVSPPIDSGSSRIGGDDGGVAFTFASGPSRKGAGH 103
           A S P DSGS   G  DGGVAFT ASGPSRKGAGH
Sbjct: 65  AASSPEDSGSRSSG--DGGVAFTLASGPSRKGAGH 95

BLAST of Lsi01G009450 vs. NCBI nr
Match: KAG6595007.1 (hypothetical protein SDJN03_11560, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 9.3e-12
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 0

Query: 14  MPSLRISSLFLIILLMASPRLFLLLDCRPLRPGSTIERHPVHNASAIAAHNPETAVSPPI 73
           M +++ SSL LI+ L+A+    LL+D RPLR GST + HP++N SA+A      A SP  
Sbjct: 1   MANVKSSSLLLIVALIAATGFVLLVDGRPLRSGSTNQSHPINNGSALAEKPETAAASPTS 60

Query: 74  DSGSSRIGGDDGGVAFTFASGPSRKGAGH 103
           DS   + GG  GGV FT  SGPSRKGAGH
Sbjct: 61  DSDIHQSGGGGGGVVFTLVSGPSRKGAGH 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CR305.0e-2770.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK12856.11.0e-2670.19hypothetical protein E5676_scaffold255G004480 [Cucumis melo var. makuwa][more]
KAE8647506.11.5e-2262.26hypothetical protein Csa_003725 [Cucumis sativus][more]
KAG6604156.11.1e-1763.16hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595007.19.3e-1251.69hypothetical protein SDJN03_11560, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G009450.1Lsi01G009450.1mRNA