Lsi01G009290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G009290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	suppressor of RPS4-RLD 1
Location	chr01: 7508940 .. 7512328 (+)
RNA-Seq Expression	Lsi01G009290
Synteny	Lsi01G009290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGTTTCAGACCTTTGACAATTCCTCTTCTCTTTTTATGTAACCATGAAAACATAGCTTGGGATTTTCATGGAATATGCCACCCTAGACATATGGATATAACTTTACTTGCATTTACTACACTTGTTGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGAAGAAAAGAAAATGTTTCTCCCTATATGTAAGTTTGGGTTTCGGCCCTTGGTATACCTTCTGAATTTTCATGATCAATAATTACGCAACCCTTTCGATGGAAACATCATCCAAATTCTACCTCTCATGTCAGGTTTTTAACCCGTCAATCCCCTCATATTGGCAAATTGATTATAAAAGAATGATATAGCTAGATAAGATAATATTATTTATTAACTATCAAAGATCCCACATTAGAAAAATCAAGGGACCTCACCGTCTTTACTAGATAGATGGGTTCTTCCTCTTATTACCAATTGGTTTTGAGATAGAATCGCATGTTATCTAATATGGTATCAGAGGATATAAAGCCCAAACGGATATTCGGTCCAATTAAAAAAACAGAATTGGGATTTGATTCAAGAATAGTGAAACCAAAAGAGACACCATCTTGAGGGGGGGGAGAGACAAGGGACCTCATACTTTTTTGTAAGATAGATGAGTTACTCCTCTCATTGCCAATTACTTTTGAGATGGAACTCCATGTTATTTAATATTAACAATAGATACAAGCCAAGGAATGACTCGGGAGCTTCCTTACCTCTCCCAAAATACCAGGCTATGCTGACCAACTAGATATCCTCTCTCATCTATCAAGCTAATACAATTTTCCTCTTCATGATGTTCCCCATTTGCCTATGTCATAACATTAGTCACTAGTAGGGTCCACATGCTAACTAACAATATAAGGCCCTGCTTCTCTCTGACCTGCTTCTGCCGTAATTTATCGGTGTATCAGAAGAGAGAATATGCTTTTGCTTTTTTTGAGTAGATAATCAGAATTTTTATGTTCTATGCAATGACTTCAATGGCACATGTATATGAACATTATTGGTGAATAACATGGTGGTTCCACCTTCCTAGTCTTGCATCACATTTAACCACATGATTCTTGAGTAAAACATTGTGATTTGTGAGGGAATACTTTACATATCAGAGCATTGGAATGGATTCAATTATCTAATCTGGGCCCCCCAATTTCTTAACTCTGATTTCGATCTAGCTTGACTAATGTAAACACTGCATGATGAAAGCCAATATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTTATTTGTTTATTTTCAATAATGCATTGAAGTGTACTATTCTTACGACTTGATTTTTCAGAGCATATGCAATGCTTATTGCGGAGAAAACTATGGATCTATGGATTTTAGTACACTAGAAACTGTGAGGGATGCAATTCTAAGGATGATCTATTACTGGTATAATATTTCTGCACTGGTACTAGTTCGATTGTCAATTCAGCAGGGTTCTAAAAACTCAACTGCATTTTAGGTACAATTTTATGCCACTATCAAGGGGCTCTGCGGCTGTTGGATTTGTTGTTTTGCTTGGATTGCTTCTTGCAGCTAACATGGAGTTCTGTGGGAACATTCCGCGAGGACTGCAAGTGGATTGGGAAGCCATGTTGAATTTCGATCCAAATTCTTTTGTTGATTCTGTGAAGAGTTGGTTGTATCCGTCTCTCAAGATGACAACATCGTGGAAAGAATATCCAGATGTGGCATCAACTCTCAAAACAACGGGATCAGTTGTTGCTGCTTTGAGCTCTTATGATGATTGA

mRNA sequence

ATGTATATAATCAGAATTTTTATGTTCTATGCAATGACTTCAATGGCACATTTCGATTGTCAATTCAGCAGGGTTCTAAAAACTCAACTGCATTTTAGGTACAATTTTATGCCACTATCAAGGGGCTCTGCGGCTGTTGGATTTGTTGTTTTGCTTGGATTGCTTCTTGCAGCTAACATGGAGTTCTGTGGGAACATTCCGCGAGGACTGCAAGTGGATTGGGAAGCCATGTTGAATTTCGATCCAAATTCTTTTGTTGATTCTGTGAAGAGTTGGTTGTATCCGTCTCTCAAGATGACAACATCGTGGAAAGAATATCCAGATGTGGCATCAACTCTCAAAACAACGGGATCAGTTGTTGCTGCTTTGAGCTCTTATGATGATTGA

Coding sequence (CDS)

ATGTATATAATCAGAATTTTTATGTTCTATGCAATGACTTCAATGGCACATTTCGATTGTCAATTCAGCAGGGTTCTAAAAACTCAACTGCATTTTAGGTACAATTTTATGCCACTATCAAGGGGCTCTGCGGCTGTTGGATTTGTTGTTTTGCTTGGATTGCTTCTTGCAGCTAACATGGAGTTCTGTGGGAACATTCCGCGAGGACTGCAAGTGGATTGGGAAGCCATGTTGAATTTCGATCCAAATTCTTTTGTTGATTCTGTGAAGAGTTGGTTGTATCCGTCTCTCAAGATGACAACATCGTGGAAAGAATATCCAGATGTGGCATCAACTCTCAAAACAACGGGATCAGTTGTTGCTGCTTTGAGCTCTTATGATGATTGA

Protein sequence

MYIIRIFMFYAMTSMAHFDCQFSRVLKTQLHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

Homology

[Close]

BLAST of Lsi01G009290 vs. ExPASy Swiss-Prot
Match: F4JS25 (Suppressor of RPS4-RLD 1 OS=Arabidopsis thaliana OX=3702 GN=SRFR1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.8e-35
Identity = 67/98 (68.37%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPL+RG+A  GFVVLLGLLLAANMEF   IP+GLQ+DWEA+LN +P SFVDSVK
Sbjct: 955  YYWYNFMPLARGTAVTGFVVLLGLLLAANMEFTETIPKGLQIDWEAILNVEPGSFVDSVK 1014

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            SWLYPSLK+ TSW+++ +++S   TTG+VVAALS+Y+D
Sbjct: 1015 SWLYPSLKINTSWRDHTEISSAFSTTGAVVAALSTYND 1052

[Close]

BLAST of Lsi01G009290 vs. ExPASy Swiss-Prot
Match: Q8NBP0 (Tetratricopeptide repeat protein 13 OS=Homo sapiens OX=9606 GN=TTC13 PE=2 SV=3)

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-11
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 30  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
           +++ YN MPLSRGS+ + + V++G L+A+  E  G IP+G  VD+EAM      +F    
Sbjct: 756 VYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKVA 815

Query: 90  KSWLYPSLK-MTTSWKEYPDVASTLKTTGSVVAALSS 126
           KSW+  +LK ++ S+K  P V+ T  T  S++  L++
Sbjct: 816 KSWM--NLKSISPSYKTLPSVSETFPTLRSMIEVLNT 850

[Close]

BLAST of Lsi01G009290 vs. ExPASy TrEMBL
Match: A0A5D3CNB4 (Suppressor of RPS4-RLD 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004340 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.1e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 30  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
           +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 895 IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 954

Query: 90  KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
           KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 955 KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 993

[Close]

BLAST of Lsi01G009290 vs. ExPASy TrEMBL
Match: A0A0A0KIG1 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G493870 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.1e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 30   LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
            +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 937  IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 996

Query: 90   KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 997  KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 1035

[Close]

BLAST of Lsi01G009290 vs. ExPASy TrEMBL
Match: A0A1S3B1I4 (suppressor of RPS4-RLD 1 OS=Cucumis melo OX=3656 GN=LOC103484823 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.1e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 30   LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
            +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 948  IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 1007

Query: 90   KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 1008 KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 1046

[Close]

BLAST of Lsi01G009290 vs. ExPASy TrEMBL
Match: A0A6J1KN76 (suppressor of RPS4-RLD 1 OS=Cucurbita maxima OX=3661 GN=LOC111496823 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 90/98 (91.84%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEA+LNFDPN FVDSVK
Sbjct: 920  YYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEALLNFDPNCFVDSVK 979

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            SWLYPSLKMTTSWKE+PDVAST KTTGSVV+ALSSYDD
Sbjct: 980  SWLYPSLKMTTSWKEFPDVASTFKTTGSVVSALSSYDD 1017

[Close]

BLAST of Lsi01G009290 vs. ExPASy TrEMBL
Match: A0A6J1HH14 (suppressor of RPS4-RLD 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463399 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 90/98 (91.84%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEA+LNFDPN FVDSVK
Sbjct: 946  YYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEALLNFDPNCFVDSVK 1005

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            SWLYPSLKMTTSWKE+PDVAST KTTGSVV+ALSSYDD
Sbjct: 1006 SWLYPSLKMTTSWKEFPDVASTFKTTGSVVSALSSYDD 1043

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: XP_008440343.1 (PREDICTED: suppressor of RPS4-RLD 1 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 30   LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
            +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 948  IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 1007

Query: 90   KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 1008 KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 1046

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: XP_004141990.1 (suppressor of RPS4-RLD 1 [Cucumis sativus] >KAE8647514.1 hypothetical protein Csa_003635 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 30   LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
            +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 948  IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 1007

Query: 90   KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 1008 KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 1046

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: TYK12842.1 (suppressor of RPS4-RLD 1 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 30  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
           +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV
Sbjct: 895 IYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 954

Query: 90  KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
           KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Sbjct: 955 KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 993

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: XP_038883616.1 (suppressor of RPS4-RLD 1 [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 8.0e-45
Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 30   LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSV 89
            +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIP+GLQVDWEAMLNFDPNSFVDSV
Sbjct: 948  VYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPQGLQVDWEAMLNFDPNSFVDSV 1007

Query: 90   KSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYD 128
            KSWLYPSLKMTTSWKEYPDV STLKTTGSVVAALSSYD
Sbjct: 1008 KSWLYPSLKMTTSWKEYPDVTSTLKTTGSVVAALSSYD 1045

[Close]

BLAST of Lsi01G009290 vs. NCBI nr
Match: XP_022963095.1 (suppressor of RPS4-RLD 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 188.3 bits (477), Expect = 4.0e-44
Identity = 90/98 (91.84%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEA+LNFDPN FVDSVK
Sbjct: 946  YYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEALLNFDPNCFVDSVK 1005

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            SWLYPSLKMTTSWKE+PDVAST KTTGSVV+ALSSYDD
Sbjct: 1006 SWLYPSLKMTTSWKEFPDVASTFKTTGSVVSALSSYDD 1043

[Close]

BLAST of Lsi01G009290 vs. TAIR 10
Match: AT4G37460.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 5.6e-36
Identity = 67/98 (68.37%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 31   HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVK 90
            ++ YNFMPL+RG+A  GFVVLLGLLLAANMEF   IP+GLQ+DWEA+LN +P SFVDSVK
Sbjct: 955  YYWYNFMPLARGTAVTGFVVLLGLLLAANMEFTETIPKGLQIDWEAILNVEPGSFVDSVK 1014

Query: 91   SWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD 129
            SWLYPSLK+ TSW+++ +++S   TTG+VVAALS+Y+D
Sbjct: 1015 SWLYPSLKINTSWRDHTEISSAFSTTGAVVAALSTYND 1052

The following BLAST results are available for this feature:

BLAST of Lsi01G009290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JS25	7.8e-35	68.37	Suppressor of RPS4-RLD 1 OS=Arabidopsis thaliana OX=3702 GN=SRFR1 PE=1 SV=1	[more]
Q8NBP0	4.6e-11	38.14	Tetratricopeptide repeat protein 13 OS=Homo sapiens OX=9606 GN=TTC13 PE=2 SV=3	[more]

BLAST of Lsi01G009290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNB4	7.1e-47	95.96	Suppressor of RPS4-RLD 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0KIG1	7.1e-47	95.96	TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G493870 ...	[more]
A0A1S3B1I4	7.1e-47	95.96	suppressor of RPS4-RLD 1 OS=Cucumis melo OX=3656 GN=LOC103484823 PE=4 SV=1	[more]
A0A6J1KN76	1.9e-44	91.84	suppressor of RPS4-RLD 1 OS=Cucurbita maxima OX=3661 GN=LOC111496823 PE=4 SV=1	[more]
A0A6J1HH14	1.9e-44	91.84	suppressor of RPS4-RLD 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146339...	[more]

BLAST of Lsi01G009290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440343.1	1.5e-46	95.96	PREDICTED: suppressor of RPS4-RLD 1 [Cucumis melo]	[more]
XP_004141990.1	1.5e-46	95.96	suppressor of RPS4-RLD 1 [Cucumis sativus] >KAE8647514.1 hypothetical protein Cs...	[more]
TYK12842.1	1.5e-46	95.96	suppressor of RPS4-RLD 1 [Cucumis melo var. makuwa]	[more]
XP_038883616.1	8.0e-45	93.88	suppressor of RPS4-RLD 1 [Benincasa hispida]	[more]
XP_022963095.1	4.0e-44	91.84	suppressor of RPS4-RLD 1 isoform X1 [Cucurbita moschata]	[more]

BLAST of Lsi01G009290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37460.1	5.6e-36	68.37	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044650	Tetratricopeptide repeat protein SRFR1-like	PANTHER	PTHR44749	SUPPRESSOR OF RPS4-RLD 1	coord: 31..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G009290.1	Lsi01G009290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0048471	perinuclear region of cytoplasm