Lsi01G008930 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G008930
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L26
Location	chr01: 7195504 .. 7195944 (-)
RNA-Seq Expression	Lsi01G008930
Synteny	Lsi01G008930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCGGCCCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCTATGCCGATTCGGAAGGATGATGAGGTCCAAGTCGTCCGTGGAACTTACAAGGGCCAGGAGGGTAAGGTAGTGCAGGTGTATCGTAGGAAGTGGATTATCCACATCGAGCGCATCACCCGCGAAAAGGTTAACGGTTCCACTGTCAACGTCGGTATCAAACCTTCGAAGGTCGTGATTACAAAGCTCAGGCTGGACAAGGACCGTAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGTGCCGCCGCCGACAAGGACAAGGGTACCAAGTTCACAGCAGAGGATATCATGCAGAGCGTCGATTAA

mRNA sequence

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCGGCCCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCTATGCCGATTCGGAAGGATGATGAGGTCCAAGTCGTCCGTGGAACTTACAAGGGCCAGGAGGGTAAGGTAGTGCAGGTGTATCGTAGGAAGTGGATTATCCACATCGAGCGCATCACCCGCGAAAAGGTTAACGGTTCCACTGTCAACGTCGGTATCAAACCTTCGAAGGTCGTGATTACAAAGCTCAGGCTGGACAAGGACCGTAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGTGCCGCCGCCGACAAGGACAAGGGTACCAAGTTCACAGCAGAGGATATCATGCAGAGCGTCGATTAA

Coding sequence (CDS)

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCGGCCCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCTATGCCGATTCGGAAGGATGATGAGGTCCAAGTCGTCCGTGGAACTTACAAGGGCCAGGAGGGTAAGGTAGTGCAGGTGTATCGTAGGAAGTGGATTATCCACATCGAGCGCATCACCCGCGAAAAGGTTAACGGTTCCACTGTCAACGTCGGTATCAAACCTTCGAAGGTCGTGATTACAAAGCTCAGGCTGGACAAGGACCGTAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGTGCCGCCGCCGACAAGGACAAGGGTACCAAGTTCACAGCAGAGGATATCATGCAGAGCGTCGATTAA

Protein sequence

MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDRKGKGRAAADKDKGTKFTAEDIMQSVD

Homology

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BLAST of Lsi01G008930 vs. ExPASy Swiss-Prot
Match: P51414 (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-66
Identity = 128/146 (87.67%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

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BLAST of Lsi01G008930 vs. ExPASy Swiss-Prot
Match: Q9FJX2 (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.7e-63
Identity = 121/146 (82.88%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           T+KG+EGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K  GRAAADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

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BLAST of Lsi01G008930 vs. ExPASy Swiss-Prot
Match: Q39411 (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.6e-61
Identity = 118/145 (81.38%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRR++RK HF+A SS RRV MS+PLSTDLR KYNVRSMPIRKDDE Q+VRG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGK+ QVYRRK +IHIER+TREKVNG+TVNVG++P+KVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSV 146
           K KGRAAADKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

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BLAST of Lsi01G008930 vs. ExPASy Swiss-Prot
Match: P12749 (60S ribosomal protein L26 OS=Rattus norvegicus OX=10116 GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.5e-45
Identity = 97/142 (68.31%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLD 120
            YKGQ+ GKVVQVYR+K++I+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAAADKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

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BLAST of Lsi01G008930 vs. ExPASy Swiss-Prot
Match: P61257 (60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-44
Identity = 97/142 (68.31%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLD 120
            YKGQ+ GKVVQVYR+K++I+IER+ REK NG+TV+VGI PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAAADKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

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BLAST of Lsi01G008930 vs. ExPASy TrEMBL
Match: A0A5D3CR35 (Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004010 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

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BLAST of Lsi01G008930 vs. ExPASy TrEMBL
Match: A0A0A0KGI0 (KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495670 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi01G008930 vs. ExPASy TrEMBL
Match: A0A1S3B106 (60S ribosomal protein L26-1 OS=Cucumis melo OX=3656 GN=LOC103484854 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi01G008930 vs. ExPASy TrEMBL
Match: A0A6J1INB1 (60S ribosomal protein L26-1 OS=Cucurbita maxima OX=3661 GN=LOC111478547 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi01G008930 vs. ExPASy TrEMBL
Match: A0A6J1GH60 (60S ribosomal protein L26-1 OS=Cucurbita moschata OX=3662 GN=LOC111453858 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

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BLAST of Lsi01G008930 vs. NCBI nr
Match: XP_004141862.1 (60S ribosomal protein L26-1 [Cucumis sativus] >XP_008440392.1 PREDICTED: 60S ribosomal protein L26-1 [Cucumis melo] >KAA0036413.1 Ribosomal protein L26/L24P, eukaryotic/archaeal [Cucumis melo var. makuwa] >KGN48613.1 hypothetical protein Csa_003604 [Cucumis sativus] >TYK12809.1 Ribosomal protein L26/L24P, eukaryotic/archaeal [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 9.7e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi01G008930 vs. NCBI nr
Match: XP_038880918.1 (60S ribosomal protein L26-1 [Benincasa hispida])

HSP 1 Score: 273.9 bits (699), Expect = 8.2e-70
Identity = 142/146 (97.26%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRVIMSAPLS+DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVIMSAPLSSDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYRRKW+IHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi01G008930 vs. NCBI nr
Match: XP_022950899.1 (60S ribosomal protein L26-1 [Cucurbita moschata] >XP_022978626.1 60S ribosomal protein L26-1 [Cucurbita maxima] >XP_023543127.1 60S ribosomal protein L26-1 [Cucurbita pepo subsp. pepo] >KAG6604126.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034289.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.3 bits (695), Expect = 2.4e-69
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi01G008930 vs. NCBI nr
Match: XP_022963400.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023003724.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023517131.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6594976.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026934.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.2 bits (692), Expect = 5.3e-69
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]

BLAST of Lsi01G008930 vs. NCBI nr
Match: XP_022132426.1 (60S ribosomal protein L26-1 [Momordica charantia])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRRVIMS+PLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVIMSSPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi01G008930 vs. TAIR 10
Match: AT3G49910.1 (Translation protein SH3-like family protein )

HSP 1 Score: 253.8 bits (647), Expect = 8.2e-68
Identity = 128/146 (87.67%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKG+EGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Lsi01G008930 vs. TAIR 10
Match: AT5G67510.1 (Translation protein SH3-like family protein )

HSP 1 Score: 242.7 bits (618), Expect = 1.9e-64
Identity = 121/146 (82.88%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGQEGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           T+KG+EGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K  GRAAADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

The following BLAST results are available for this feature:

BLAST of Lsi01G008930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51414	1.2e-66	87.67	60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2	[more]
Q9FJX2	2.7e-63	82.88	60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1	[more]
Q39411	5.6e-61	81.38	60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1	[more]
P12749	9.5e-45	68.31	60S ribosomal protein L26 OS=Rattus norvegicus OX=10116 GN=Rpl26 PE=1 SV=1	[more]
P61257	2.1e-44	68.31	60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1	[more]

BLAST of Lsi01G008930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CR35	4.7e-71	99.32	Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0KGI0	4.7e-71	99.32	KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495670 PE=3 SV...	[more]
A0A1S3B106	4.7e-71	99.32	60S ribosomal protein L26-1 OS=Cucumis melo OX=3656 GN=LOC103484854 PE=3 SV=1	[more]
A0A6J1INB1	1.2e-69	96.58	60S ribosomal protein L26-1 OS=Cucurbita maxima OX=3661 GN=LOC111478547 PE=3 SV=...	[more]
A0A6J1GH60	1.2e-69	96.58	60S ribosomal protein L26-1 OS=Cucurbita moschata OX=3662 GN=LOC111453858 PE=3 S...	[more]

BLAST of Lsi01G008930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141862.1	9.7e-71	99.32	60S ribosomal protein L26-1 [Cucumis sativus] >XP_008440392.1 PREDICTED: 60S rib...	[more]
XP_038880918.1	8.2e-70	97.26	60S ribosomal protein L26-1 [Benincasa hispida]	[more]
XP_022950899.1	2.4e-69	96.58	60S ribosomal protein L26-1 [Cucurbita moschata] >XP_022978626.1 60S ribosomal p...	[more]
XP_022963400.1	5.3e-69	96.58	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023003724.1 60S riboso...	[more]
XP_022132426.1	1.2e-68	95.89	60S ribosomal protein L26-1 [Momordica charantia]	[more]

BLAST of Lsi01G008930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49910.1	8.2e-68	87.67	Translation protein SH3-like family protein	[more]
AT5G67510.1	1.9e-64	82.88	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 e-value: 7.1E-6 score: 35.5
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 e-value: 1.2E-9 score: 37.8
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 e-value: 5.8E-38 score: 129.7
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	TIGRFAM	TIGR01080	TIGR01080	coord: 8..122 e-value: 6.2E-51 score: 169.6
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 1..146
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..144 e-value: 2.1E-56 score: 191.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR11143:SF16	60S RIBOSOMAL PROTEIN L26-1	coord: 1..146
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 52..105 e-value: 6.39828E-14 score: 60.6062
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G008930.1	Lsi01G008930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome