Lsi01G008840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G008840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cyclin-D1-1-like
Location	chr01: 7141272 .. 7144492 (+)
RNA-Seq Expression	Lsi01G008840
Synteny	Lsi01G008840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATTCCATTCTATACCTTCTCTCTCTATCTCTCTCTATATCTCAATTTTAAAATAGAAAAAGAAAATTATTTATCTAATTTTCTTGGTTTGTTTCGTGTATTTTTCATATTATAGTTGTTGGTGCTTTAATCGTTTAAGGTGATCTAAAAACGTCACGTCCTTTGTTCAGAGTGGAGATTCTTGACGTGCATCGTGGAGAGAGCAATCAAAGAAGGCGTCAGAAACTCATTTACTCCCAATATATATATCATAATCTCTCGCTCGTGTGTAGTCTCTGATTTATAGCTTAAAACTAGGCCTACTTCATAAACTAAGCCACTCCCAAACGCAACTTGGAATTGTTGAGTTGAGAGTTGAGAGAGAAATGGGGAACTGTCAGGCGGCGGAGGCGGCGACGGTGGTGATTCAGCACCCTGGGAATCAAAAGATCGAGAGGATTTATTGGTCAGTAAGTGCACACGAGATCATGAACTCAAATCCCGGCCACTACGTTGCTCTCCTTCTCACTTCCTCCACTTTGAAGTCCGAAAATGGAACCCCAATCAAGCAGCTCAAACTCCTCCGCCCTGATGACACGCTTCTCATCGGCCACGTTTATCGCCTCATCACATTCGAAGGTAATTTTCTTTTTCCCTTTTCTTTTTCTTTAATTATATACTTTTTATATATTATGATTATTAAAAGTGAATCTCTAACCTAGTAAAGTAAATTAGCCGTACATAAATACAACGCCAGATGCATCTAAATATATTTCGTATTTTTCTTGCGAAATATCCTACTGTGGTGGATTATTATAAAACAAATGACAGTTTTGGTTGAATAATTTTTTTTAATAAATATTACTAAATTTGTAGGACCCTCCAGCATTGTGGTAGTCTCAAATAATTTACACTTTGATTGAGCTTTATATCACACGTCTTCATATTTTTTTTCGAACCTCTAAATTGAAGTTTTTTTATTTTTATTTTTTGAAGGGACTCTACATTGAAGTACTGAGATTTAAAATAAAAAAACGTAATTTGAATACATAAAATGGTAGTTTTTTTTTAAAAAAAATAATATGAGGAGATAAATGAGATTGAACCTTTAACTTTGAAATTAAAATAGGACAAGTTGTCATCTACATTTAACACATAATAATTATTGTTATCATTACTATCATTACTTTTTTTTTTTGTTGATGTGTGAGCTGGTGCCCATCTCTAATAAGATTGAATCAACTAAAGCTGATATTAGTTCAACTATTAATAACTAACAAGCCTGTGATTTGAATCTTCTATTCATATCGTACTAAAAGAACAGATTGAATCATCCAGTATTTTGTTTATTTACTCGTGTCAAATATTTTTTTCGGTCTAAAATTAGGATTTTTTTTTTCTCTTTCAGATGTACTGAAGGAGTTTGCTGCAAAGAAATGTGTGAAATTAGGGAAGTTGCTGAAAGAGGGAGGAGCGCTTTCGGTTGGGATGAAGATAAAGGGCACAGAATCTGCTTCAAATCCAAATGCTAATTCTAAATCCCAAAATTATATGAAGGTAATCAAATACCCATAACCCTTAATCATACTCTGAATCCCAAAAAGTGGATCTTTTTTATTTTTTTTGAAAAAAAATCCCATTGGTTGGGAAAATATCGCGATTTATTGAATTTTGTTTTCATGATTGCACGCTGATTAAAGCCAAAAAAAACTAAAAGAAAAAACAAAAAGTTGTTTTTCTGAATAAAGAAGCATCTGAAATTGGTTTGAAATTTAAGGCCACGGATATCGAGGGAAAAGGCTTTTTATGGGTCACTTCATGAATCTTGTCAGGAATTGAAGTAGAGCTGTATAGTTGCAGAGGTATTTAATTTTATTTCTTAAATCAAATATTCAACCCAATTTTTTTCTTTAAAGAAAATTCAACCCCTTTATAAATTAAGGATTGGAAGAAAGAAAATAAATAAATAAATAAAAGTGGAAAATTTTAATCAGCTTTTGCAAGCATTCCCTGCCTGCTGTGTCTTGTGGATTTAGAAAAGGGGAAAAAAAGTTTGCTTAACTTAAAATTTAATTAATTATTCAAGTGACCAAATCATAATGGGGTTTTGCCTGTATATTGAAACAAACTCATTTTGAATTTGAGTTCCATTTCCTACTGACTTCAACAACAATTTAAGCATTTAAATTTACAGGTCTTAATCTTTTGAAACCTTTTGCTAGTGGGGCTCTTTTCAATAGAACACTTTCTTTTTCTTTTTCTCTTTTTTTTTTTTTTTTTTTTTAAAAATCTAAATAACATGGCCTTTCCTTTGATCACAATCATAAAGTACTTGAAAGATATTTATTTGCTTCCTCTTTGCAAAGTCTAAAACCAATATCTTCAAATCAACGTGAACATTCCTACTTTTTCATCATTGGGGTCAAATCAAAACAATTCTTTTGATGAATATGGTCAGCCGGAGCAGGACGCCGGGCAAAGCGACGCCGGAAGCAGCGGCGGTGGAAGAGGCGGAGGAGGACAGAGAGGTATGGGAAGGCATTATGGTGGAGGAAGTCAATGGAGGCCAGCTTTACAGAGTATTGCAGAAATTGGAATTAATTGAACAAGAAAAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGCAATATGAACACACAAAACAAACACTGGCATGAATATGATATTCAGCTGGAAATTGGCCTTTCGCTTTCATCGTCTTGAATGAATAATTTACCAGAAGAAGTTAACGTCAAAAATCCAATCTCTATCTTTATATACCTTTTTTATATTTTTCTCTCCATTAGTTAGATACGTCTCTCTGTGTATTTGCAGTAGTACTTAGTTCTTTCCATCTAAACTTTGCACCTTTTTTTTTCATTTGGAAATTAGTGTACGGAACTTCATTAGTTGAGATGCTTTAGTTTTTATGACTTTTCTTAAAATGTAAATTATCAGCAATTACCATAAATAATTATCTGTTAATTAATTAACTTCCTTTAATTTCATTTTTAATTAATGGGATCATATGCCATGTTGGATTAATCATATGAGTTTTGATTACCAAGAATGGTAGGTGTTGGATGCATTAATTGCATCAATTCAACCGAATTGTATGGTTGGAAAAGCTGATTACTTTGTTTGTTTTTTTGTTTCACCTAAAAGGAAATTGCTTATATATTAATGCATCGTCTTTCTCTTATCTAATGTAAGATAATTAGTTATACAACGAATTTGTGTT

mRNA sequence

CTTCATTCCATTCTATACCTTCTCTCTCTATCTCTCTCTATATCTCAATTTTAAAATAGAAAAAGAAAATTATTTATCTAATTTTCTTGGTTTGTTTCGTGTATTTTTCATATTATAGTTGTTGGTGCTTTAATCGTTTAAGGTGATCTAAAAACGTCACGTCCTTTGTTCAGAGTGGAGATTCTTGACGTGCATCGTGGAGAGAGCAATCAAAGAAGGCGTCAGAAACTCATTTACTCCCAATATATATATCATAATCTCTCGCTCGTGTGTAGTCTCTGATTTATAGCTTAAAACTAGGCCTACTTCATAAACTAAGCCACTCCCAAACGCAACTTGGAATTGTTGAGTTGAGAGTTGAGAGAGAAATGGGGAACTGTCAGGCGGCGGAGGCGGCGACGGTGGTGATTCAGCACCCTGGGAATCAAAAGATCGAGAGGATTTATTGGTCAGTAAGTGCACACGAGATCATGAACTCAAATCCCGGCCACTACGTTGCTCTCCTTCTCACTTCCTCCACTTTGAAGTCCGAAAATGGAACCCCAATCAAGCAGCTCAAACTCCTCCGCCCTGATGACACGCTTCTCATCGGCCACGTTTATCGCCTCATCACATTCGAAGATGTACTGAAGGAGTTTGCTGCAAAGAAATGTGTGAAATTAGGGAAGTTGCTGAAAGAGGGAGGAGCGCTTTCGGTTGGGATGAAGATAAAGGGCACAGAATCTGCTTCAAATCCAAATGCTAATTCTAAATCCCAAAATTATATGAAGCCGGAGCAGGACGCCGGGCAAAGCGACGCCGGAAGCAGCGGCGGTGGAAGAGGCGGAGGAGGACAGAGAGGTATGGGAAGGCATTATGGTGGAGGAAGTCAATGGAGGCCAGCTTTACAGAGTATTGCAGAAATTGGAATTAATTGAACAAGAAAAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGCAATATGAACACACAAAACAAACACTGGCATGAATATGATATTCAGCTGGAAATTGGCCTTTCGCTTTCATCGTCTTGAATGAATAATTTACCAGAAGAAGTTAACGTCAAAAATCCAATCTCTATCTTTATATACCTTTTTTATATTTTTCTCTCCATTAGTTAGATACGTCTCTCTGTGTATTTGCAGTAGTACTTAGTTCTTTCCATCTAAACTTTGCACCTTTTTTTTTCATTTGGAAATTAGTGTACGGAACTTCATTAGTTGAGATGCTTTAGTTTTTATGACTTTTCTTAAAATGTAAATTATCAGCAATTACCATAAATAATTATCTGTTAATTAATTAACTTCCTTTAATTTCATTTTTAATTAATGGGATCATATGCCATGTTGGATTAATCATATGAGTTTTGATTACCAAGAATGGTAGGTGTTGGATGCATTAATTGCATCAATTCAACCGAATTGTATGGTTGGAAAAGCTGATTACTTTGTTTGTTTTTTTGTTTCACCTAAAAGGAAATTGCTTATATATTAATGCATCGTCTTTCTCTTATCTAATGTAAGATAATTAGTTATACAACGAATTTGTGTT

Coding sequence (CDS)

ATGGGGAACTGTCAGGCGGCGGAGGCGGCGACGGTGGTGATTCAGCACCCTGGGAATCAAAAGATCGAGAGGATTTATTGGTCAGTAAGTGCACACGAGATCATGAACTCAAATCCCGGCCACTACGTTGCTCTCCTTCTCACTTCCTCCACTTTGAAGTCCGAAAATGGAACCCCAATCAAGCAGCTCAAACTCCTCCGCCCTGATGACACGCTTCTCATCGGCCACGTTTATCGCCTCATCACATTCGAAGATGTACTGAAGGAGTTTGCTGCAAAGAAATGTGTGAAATTAGGGAAGTTGCTGAAAGAGGGAGGAGCGCTTTCGGTTGGGATGAAGATAAAGGGCACAGAATCTGCTTCAAATCCAAATGCTAATTCTAAATCCCAAAATTATATGAAGCCGGAGCAGGACGCCGGGCAAAGCGACGCCGGAAGCAGCGGCGGTGGAAGAGGCGGAGGAGGACAGAGAGGTATGGGAAGGCATTATGGTGGAGGAAGTCAATGGAGGCCAGCTTTACAGAGTATTGCAGAAATTGGAATTAATTGA

Protein sequence

MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTPIKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTESASNPNANSKSQNYMKPEQDAGQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQSIAEIGIN

Homology

[Close]

BLAST of Lsi01G008840 vs. ExPASy TrEMBL
Match: A0A0A0KLJ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495750 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.5e-85
Identity = 171/186 (91.94%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTPI 60
           MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALL+TSST+KSENGTPI
Sbjct: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLITSSTMKSENGTPI 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTESA 120
           KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKG++S 
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDSG 120

Query: 121 SNPNANSKSQNYMKPEQDA----GQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQSI 180
           SNPNANSKSQNYMKPEQDA      S+AGSSGGGR   GQRGMGRHYGGGSQWRPALQSI
Sbjct: 121 SNPNANSKSQNYMKPEQDAEHRLENSNAGSSGGGR---GQRGMGRHYGGGSQWRPALQSI 180

Query: 181 AEIGIN 183
           AEIGIN
Sbjct: 181 AEIGIN 183

[Close]

BLAST of Lsi01G008840 vs. ExPASy TrEMBL
Match: A0A1S4DTC0 (uncharacterized protein LOC103484864 OS=Cucumis melo OX=3656 GN=LOC103484864 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.6e-84
Identity = 172/188 (91.49%), Postives = 176/188 (93.62%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTPI 60
           MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALL+TSSTLKSENGTPI
Sbjct: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLITSSTLKSENGTPI 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTESA 120
           KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKG++S 
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDSG 120

Query: 121 SNPNANSKSQNYMK--PEQDA----GQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQ 180
           SNPNANSKSQNYMK  PEQ+A      SDAGSSGGGR   GQRGMGRHYGGGSQWRPALQ
Sbjct: 121 SNPNANSKSQNYMKSQPEQNAEHRLENSDAGSSGGGR---GQRGMGRHYGGGSQWRPALQ 180

Query: 181 SIAEIGIN 183
           SIAEIGIN
Sbjct: 181 SIAEIGIN 185

[Close]

BLAST of Lsi01G008840 vs. ExPASy TrEMBL
Match: A0A6J1HGV9 (uncharacterized protein LOC111463436 OS=Cucurbita moschata OX=3662 GN=LOC111463436 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.4e-80
Identity = 161/187 (86.10%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPG-NQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTP 60
           MGNCQAAEAATVVIQHPG N KIERIYWSVSAH+IMNSNPGHYVAL++TSSTLK++NGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTES 120
           IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS+GMKI  T S
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKINDTNS 120

Query: 121 ASNPNANSKSQNYMKPEQDAGQ----SDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQS 180
           ASNPN+NSKSQNYMK EQ+ G+     DAGS  GGRGGGG RGMGRHYGGG QWRPALQS
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSRSGGRGGGGPRGMGRHYGGGGQWRPALQS 180

Query: 181 IAEIGIN 183
           IAE+GIN
Sbjct: 181 IAEVGIN 187

[Close]

BLAST of Lsi01G008840 vs. ExPASy TrEMBL
Match: A0A6J1KWE0 (uncharacterized protein LOC111497021 OS=Cucurbita maxima OX=3661 GN=LOC111497021 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.1e-80
Identity = 160/187 (85.56%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPG-NQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTP 60
           MGNCQAAEAATVVIQHPG N +IERIYWSVSAH+IMNSNPGHYVAL++TSSTLK++NGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPRIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTES 120
           IK LKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS+GMK K T+S
Sbjct: 61  IKHLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKKKDTDS 120

Query: 121 ASNPNANSKSQNYMKPEQDAGQ----SDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQS 180
           ASNPN+NSKSQNYMK EQ+ G+     DAGSS GGRGGGG RGMGRHYGGG QWRPALQS
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180

Query: 181 IAEIGIN 183
           IAE+GIN
Sbjct: 181 IAEVGIN 187

[Close]

BLAST of Lsi01G008840 vs. ExPASy TrEMBL
Match: A0A6J1GER4 (uncharacterized protein LOC111453516 OS=Cucurbita moschata OX=3662 GN=LOC111453516 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.2e-73
Identity = 151/182 (82.97%), Postives = 161/182 (88.46%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTPI 60
           MGNCQAAEAATVVI HPGN KIERIYWSVSAHE+MNSNPGHYVALLLTSST  S+NG PI
Sbjct: 1   MGNCQAAEAATVVIHHPGNHKIERIYWSVSAHEVMNSNPGHYVALLLTSSTFNSQNGNPI 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTESA 120
           KQLKLLRPDDTLLIGHVYRLI+FEDVLKEFAAKKCVKLGKLL+EGGALSVGMKIK ++SA
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLISFEDVLKEFAAKKCVKLGKLLREGGALSVGMKIKPSDSA 120

Query: 121 SNPNANSKSQNYMKPEQDAGQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQSIAEIG 180
           SN      SQN+ KPE+    S+AGSSGGG GGGGQR MG+HYGGG QWRPALQSIAE G
Sbjct: 121 SN-----SSQNHRKPERRLESSNAGSSGGG-GGGGQRSMGKHYGGGCQWRPALQSIAEFG 176

Query: 181 IN 183
           IN
Sbjct: 181 IN 176

[Close]

BLAST of Lsi01G008840 vs. NCBI nr
Match: XP_038883937.1 (uncharacterized protein LOC120074768 [Benincasa hispida])

HSP 1 Score: 339.3 bits (869), Expect = 2.0e-89
Identity = 176/183 (96.17%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTPI 60
           MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSST K+ENGTPI
Sbjct: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTTKTENGTPI 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTE-S 120
           KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKG++ S
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDNS 120

Query: 121 ASNPNANSKSQNYMKPEQDAGQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQSIAEI 180
           ASNPNANSKSQNYMKPEQD G+SDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQSIAEI
Sbjct: 121 ASNPNANSKSQNYMKPEQDGGRSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQSIAEI 180

Query: 181 GIN 183
           GIN
Sbjct: 181 GIN 183

[Close]

BLAST of Lsi01G008840 vs. NCBI nr
Match: XP_004141857.1 (uncharacterized protein LOC101222947 [Cucumis sativus] >KGN48621.1 hypothetical protein Csa_004276 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 5.1e-85
Identity = 171/186 (91.94%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTPI 60
           MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALL+TSST+KSENGTPI
Sbjct: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLITSSTMKSENGTPI 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTESA 120
           KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKG++S 
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDSG 120

Query: 121 SNPNANSKSQNYMKPEQDA----GQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQSI 180
           SNPNANSKSQNYMKPEQDA      S+AGSSGGGR   GQRGMGRHYGGGSQWRPALQSI
Sbjct: 121 SNPNANSKSQNYMKPEQDAEHRLENSNAGSSGGGR---GQRGMGRHYGGGSQWRPALQSI 180

Query: 181 AEIGIN 183
           AEIGIN
Sbjct: 181 AEIGIN 183

[Close]

BLAST of Lsi01G008840 vs. NCBI nr
Match: XP_016899236.1 (PREDICTED: uncharacterized protein LOC103484864 [Cucumis melo])

HSP 1 Score: 320.5 bits (820), Expect = 9.6e-84
Identity = 172/188 (91.49%), Postives = 176/188 (93.62%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTPI 60
           MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALL+TSSTLKSENGTPI
Sbjct: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLITSSTLKSENGTPI 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTESA 120
           KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKG++S 
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDSG 120

Query: 121 SNPNANSKSQNYMK--PEQDA----GQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQ 180
           SNPNANSKSQNYMK  PEQ+A      SDAGSSGGGR   GQRGMGRHYGGGSQWRPALQ
Sbjct: 121 SNPNANSKSQNYMKSQPEQNAEHRLENSDAGSSGGGR---GQRGMGRHYGGGSQWRPALQ 180

Query: 181 SIAEIGIN 183
           SIAEIGIN
Sbjct: 181 SIAEIGIN 185

[Close]

BLAST of Lsi01G008840 vs. NCBI nr
Match: XP_022963138.1 (uncharacterized protein LOC111463436 [Cucurbita moschata])

HSP 1 Score: 308.1 bits (788), Expect = 4.9e-80
Identity = 161/187 (86.10%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPG-NQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTP 60
           MGNCQAAEAATVVIQHPG N KIERIYWSVSAH+IMNSNPGHYVAL++TSSTLK++NGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTES 120
           IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS+GMKI  T S
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKINDTNS 120

Query: 121 ASNPNANSKSQNYMKPEQDAGQ----SDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQS 180
           ASNPN+NSKSQNYMK EQ+ G+     DAGS  GGRGGGG RGMGRHYGGG QWRPALQS
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSRSGGRGGGGPRGMGRHYGGGGQWRPALQS 180

Query: 181 IAEIGIN 183
           IAE+GIN
Sbjct: 181 IAEVGIN 187

[Close]

BLAST of Lsi01G008840 vs. NCBI nr
Match: XP_023003398.1 (uncharacterized protein LOC111497021 [Cucurbita maxima])

HSP 1 Score: 307.4 bits (786), Expect = 8.4e-80
Identity = 160/187 (85.56%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPG-NQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTP 60
           MGNCQAAEAATVVIQHPG N +IERIYWSVSAH+IMNSNPGHYVAL++TSSTLK++NGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPRIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTES 120
           IK LKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS+GMK K T+S
Sbjct: 61  IKHLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKKKDTDS 120

Query: 121 ASNPNANSKSQNYMKPEQDAGQ----SDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQS 180
           ASNPN+NSKSQNYMK EQ+ G+     DAGSS GGRGGGG RGMGRHYGGG QWRPALQS
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180

Query: 181 IAEIGIN 183
           IAE+GIN
Sbjct: 181 IAEVGIN 187

[Close]

BLAST of Lsi01G008840 vs. TAIR 10
Match: AT5G67620.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: microtubule; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 184.9 bits (468), Expect = 5.8e-47
Identity = 110/187 (58.82%), Postives = 127/187 (67.91%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTPI 60
           MGNCQAAEAATV+I HP   K+ERIYWSV+A +IM SNPGHYVA+++TS T+K+E G P+
Sbjct: 1   MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSV------GMKI 120
           KQLKLLRPDDTLLIGHVYRL++FE+VL EFA KKCVKLGKLLKEGG L +        K 
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGKLLKEGGGLDLTKKKTKHRKK 120

Query: 121 KGTESASNPNANSKSQNYMKPEQD-AGQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPAL 180
           K  +     N NS       P QD A  + AG +GG        G GR   GG  WRPAL
Sbjct: 121 KLDQETGKVNPNSDP----NPNQDGADNAVAGENGGDGFMRRSHGGGR---GGGGWRPAL 180

[Close]

BLAST of Lsi01G008840 vs. TAIR 10
Match: AT5G62900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50090.1); Has 157 Blast hits to 157 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.1 bits (253), Expect = 5.0e-22
Identity = 72/178 (40.45%), Postives = 99/178 (55.62%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSENGTPI 60
           MGNCQAAEAAT VIQ P  + + R Y +V+A E++ S+PGH+VALLL SS +       +
Sbjct: 1   MGNCQAAEAATTVIQQPDGKSV-RFYCTVNASEVIKSHPGHHVALLL-SSAVPHGGSLRV 60

Query: 61  KQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGTESA 120
            ++KLLRP D LL+GHVYRLI+ E+V+K   AKK    GK+ K  G  SV  +     + 
Sbjct: 61  TRIKLLRPSDNLLLGHVYRLISSEEVMKGIRAKKS---GKMKKIHGEFSVAEEEINPLTL 120

Query: 121 SNPNANSKSQNYMKPEQDAGQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQSIAE 179
            + +A+ K       E+  G  +          GG     R       W+P+LQSI+E
Sbjct: 121 RSESASDKDTQRRIHEKQRGMMNT---------GGATNKVR------AWQPSLQSISE 158

[Close]

BLAST of Lsi01G008840 vs. TAIR 10
Match: AT5G50090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 72/185 (38.92%), Postives = 106/185 (57.30%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSE---NG 60
           MGNCQA + A VVIQHP N K E++   VSA  +M  NPGH V+LL++++ L S    +G
Sbjct: 1   MGNCQAVDTARVVIQHP-NGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHG 60

Query: 61  TPIK--QLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIK 120
            P++  ++KLLRP DTL++GHVYRLIT ++V+K   AKKC KL K  K         K++
Sbjct: 61  GPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDD-----KLE 120

Query: 121 GTESASNPNANSKSQNYMKPEQDAGQSDAGSSGGGRGGGGQRGMGRHYGGGSQWRPALQS 180
             ++ ++   +++ Q  MK +Q+  +S    S                     W+P+LQS
Sbjct: 121 MVKAINSTKLDNEDQLQMK-KQEKERSRISRS---------------------WQPSLQS 157

[Close]

BLAST of Lsi01G008840 vs. TAIR 10
Match: AT5G50090.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-20
Identity = 65/154 (42.21%), Postives = 91/154 (59.09%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLLTSSTLKSE---NG 60
           MGNCQA + A VVIQHP N K E++   VSA  +M  NPGH V+LL++++ L S    +G
Sbjct: 1   MGNCQAVDTARVVIQHP-NGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHG 60

Query: 61  TPIK--QLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIK 120
            P++  ++KLLRP DTL++GHVYRLIT ++V+K   AKKC KL K  K        +K  
Sbjct: 61  GPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDDKLEMVKAI 120

Query: 121 GTESASNPNANSKSQNYMKPEQDAGQ--SDAGSS 148
            +    N +   +     +  Q + Q  S+ GSS
Sbjct: 121 NSTKLDNEDQEKERSRISRSWQPSLQSISEGGSS 153

[Close]

BLAST of Lsi01G008840 vs. TAIR 10
Match: AT1G60010.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-17
Identity = 68/190 (35.79%), Postives = 98/190 (51.58%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLL-----------TS 60
           MGNCQA +AA +V+QHP + KI+R Y  VS  EIM   PGHYV+L++           T+
Sbjct: 1   MGNCQAVDAAALVLQHP-DGKIDRYYGPVSVSEIMRMYPGHYVSLIIPLPEKNIPATTTT 60

Query: 61  STLKSENG-TPIKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGAL 120
           +  KSE       ++KLLRP + L++GH YRLIT ++V+K   AKK  K  K   E    
Sbjct: 61  TDDKSERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKKHQSE---- 120

Query: 121 SVGMKIKGTESASNPNANSKSQNYMKPEQDAGQSDAGSSGGGRGGGGQRGMGRHYGGGSQ 179
           +   K K +        + K+QN ++ + +  +S   +S   R                 
Sbjct: 121 TSKEKKKPSSEKKIDEESDKNQN-LETKDEKQRSVLTNSASSR--------------SKT 170

The following BLAST results are available for this feature:

BLAST of Lsi01G008840 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G008840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLJ3	2.5e-85	91.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495750 PE=4 SV=1	[more]
A0A1S4DTC0	4.6e-84	91.49	uncharacterized protein LOC103484864 OS=Cucumis melo OX=3656 GN=LOC103484864 PE=...	[more]
A0A6J1HGV9	2.4e-80	86.10	uncharacterized protein LOC111463436 OS=Cucurbita moschata OX=3662 GN=LOC1114634...	[more]
A0A6J1KWE0	4.1e-80	85.56	uncharacterized protein LOC111497021 OS=Cucurbita maxima OX=3661 GN=LOC111497021...	[more]
A0A6J1GER4	2.2e-73	82.97	uncharacterized protein LOC111453516 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]

BLAST of Lsi01G008840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883937.1	2.0e-89	96.17	uncharacterized protein LOC120074768 [Benincasa hispida]	[more]
XP_004141857.1	5.1e-85	91.94	uncharacterized protein LOC101222947 [Cucumis sativus] >KGN48621.1 hypothetical ...	[more]
XP_016899236.1	9.6e-84	91.49	PREDICTED: uncharacterized protein LOC103484864 [Cucumis melo]	[more]
XP_022963138.1	4.9e-80	86.10	uncharacterized protein LOC111463436 [Cucurbita moschata]	[more]
XP_023003398.1	8.4e-80	85.56	uncharacterized protein LOC111497021 [Cucurbita maxima]	[more]

BLAST of Lsi01G008840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67620.1	5.8e-47	58.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G62900.1	5.0e-22	40.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G50090.1	1.1e-21	38.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G50090.2	2.7e-20	42.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G60010.1	3.7e-17	35.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..178 e-value: 1.9E-29 score: 103.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..169
None	No IPR available	PANTHER	PTHR33413:SF1	EXPRESSED PROTEIN	coord: 1..179
None	No IPR available	PANTHER	PTHR33413	EXPRESSED PROTEIN	coord: 1..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G008840.1	Lsi01G008840.1	mRNA